Master’s studies

Syllabus for Bioinformatics on the Web

Bioinformatik på nätet

Syllabus

  • 5 credits
  • Course code: 1BG425
  • Education cycle: First cycle
  • Main field(s) of study and in-depth level: Biology G2F
  • Grading system: Fail (U), Pass (G).
  • Established: 2010-11-11
  • Established by: The Faculty Board of Science and Technology
  • Applies from: week 01, 2011
  • Entry requirements: 60 credits in biology, or 45 credits in biology and 15 credits in chemistry or earth science
  • Responsible department: Biology Education Centre

Learning outcomes

After the course the student should have the following skills;


  • to search biological information on the web,

  • to use basic software for studies of DNA sequences and protein structures,

  • to use bioinformatics tools to solve biological problems, and

  • to interpret results from various computer based methods.

Content

Treated issues; Compile sequence data. Basic sequence analysis. Databases and search in databases. Patterns in DNA sequences. Secondary structures. Three-dimensional structures of proteins. Alignments. Phylogenetic reconstructions. Metabolic reconstructions.

Instruction

Teaching consists of a series of problem-based computer exercises.

Assessment

Modules: Theory 2 credits; Computer exercises 3 credits.
To pass the course is required that all computer exercises equivalent to 3 credits is passed. The theory part is examined by a written examination equivalent to 2 credits.

Reading list

Applies from: week 01, 2012