Main field(s) of study and in-depth level:
Computer Science A1N,
Explanation of codes
The code indicates the education cycle and in-depth level of the course in relation to other courses within the same main field of study according to the requirements for general degrees:
G1N: has only upper-secondary level entry requirements
G1F: has less than 60 credits in first-cycle course/s as entry requirements
G1E: contains specially designed degree project for Higher Education Diploma
G2F: has at least 60 credits in first-cycle course/s as entry requirements
G2E: has at least 60 credits in first-cycle course/s as entry requirements, contains degree project for Bachelor of Arts/Bachelor of Science
GXX: in-depth level of the course cannot be classified.
A1N: has only first-cycle course/s as entry requirements
A1F: has second-cycle course/s as entry requirements
A1E: contains degree project for Master of Arts/Master of Science (60 credits)
A2E: contains degree project for Master of Arts/Master of Science (120 credits)
AXX: in-depth level of the course cannot be classified.
Fail (U), Pass (3), Pass with credit (4), Pass with distinction (5)
The Faculty Board of Science and Technology
120 credits including (1) 15 credits in computer science, including 5 credits in programming, and 15 credits in biology, or (2) 15 credits within the Master's Programme in Bioinformatics, including 5 credits in programming. English language proficiency that corresponds to English studies at upper secondary (high school) level in Sweden ("English 6").
On completion of the course the student shall be able to:
Explain theories and methods that are relevant for handling and analysis of massive datasets in life science;
Use modern systems for handling and analysis of massive datasets in life science;
Analyze properties of data-intensive life science applications and based on this suggest suitable strategies and architectures to meet application needs;
Critically analyse, discuss and present solutions in writing and orally.
Methodology in life science applications where concepts and methods for large scale data management are used. Processing of life science data using the programming model MapReduce such as Apache Spark. Batch system on computational clusters. Reproducible data analysis using workflow systems. Analysis using software containers and micro-service frameworks such as Kubernetes. Use of large-scale storage systems and virtualised environments. Applications in life science, for example genomics, proteomics, metabolomics, cell biology, pharmaceutical development, and AI/Machine learning.
Lectures, guest lectures, laboratory work, seminars and group supervision. Laboratory work and seminar classes are mandatory.
Written exam. Written and oral presentation of assignments. Active participation in seminars and laboratory work.
If there are special reasons for doing so, an examiner may make an exception from the method of assessment indicated and allow a student to be assessed by another method. An example of special reasons might be a certificate regarding special pedagogical support from the disability coordinator of the university.
This course cannot be included in the same degree as 1TD065 Big Data in Life Sciences.
week 33, 2021
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