Ola Wallerman
Bioinformatician (leave of absence) at Department of Medical Biochemistry and Microbiology; Genetics and Genomics; Kerstin Lindblad-Toh
- Mobile phone:
- +46 76 391 93 63
- E-mail:
- ola.wallerman@imbim.uu.se
- Visiting address:
- BMC
Husargatan 3
752 37 UPPSALA - Postal address:
- Box 582
751 23 UPPSALA - Leave of absence:
- 2024-07-15 - 2025-02-05
More information is available to staff who log in.
Publications
Recent publications
- High-Quality Genome Assemblies of 4 Members of the Podospora anserina Species Complex (2024)
- Ecological genomics in the Northern krill uncovers loci for local adaptation across ocean basins (2024)
- Evolutionary constraint and innovation across hundreds of placental mammals (2023)
- Leveraging base-pair mammalian constraint to understand genetic variation and human disease (2023)
- A genomic and morphometric analysis of alpine bumblebees (2022)
All publications
Articles
- High-Quality Genome Assemblies of 4 Members of the Podospora anserina Species Complex (2024)
- Ecological genomics in the Northern krill uncovers loci for local adaptation across ocean basins (2024)
- Evolutionary constraint and innovation across hundreds of placental mammals (2023)
- Leveraging base-pair mammalian constraint to understand genetic variation and human disease (2023)
- A genomic and morphometric analysis of alpine bumblebees (2022)
- Heterochiasmy and the establishment of gsdf as a novel sex determining gene in Atlantic halibut (2022)
- Rapid adaptive radiation of Darwin's finches depends on ancestral genetic modules (2022)
- Bayesian model and selection signature analyses reveal risk factors for canine atopic dermatitis (2022)
- Functional differences between TSHR alleles associate with variation in spawning season in Atlantic herring (2021)
- Genetic Barriers to Historical Gene Flow between Cryptic Species of Alpine Bumblebees Revealed by Comparative Population Genomics (2021)
- The Enterprise, a massive transposon carrying Spok meiotic drive genes (2021)
- A novel canine reference genome resolves genomic architecture and uncovers transcript complexity (2021)
- The Human Adenovirus 2 Transcriptome (2021)
- Comparative host-coronavirus protein interaction networks reveal pan-viral disease mechanisms (2020)
- Reconstruction of the birth of a male sex chromosome present in Atlantic herring (2020)
- Regulatory changes in pterin and carotenoid genes underlie balanced color polymorphisms in the wall lizard (2019)
- Allele specific chromatin signals, 3D interactions, and motif predictions for immune and B cell related diseases (2019)
- Chromosomal inversions associated with environmental adaptation in honeybees (2019)
- Maintenance of High Genome Integrity over Vegetative Growth in the Fairy-Ring Mushroom Marasmius oreades (2019)
- A chromosome-level assembly of the Atlantic herring (2019)
- Genetic prevention of hepatitis C virus-induced liver fibrosis by allele-specific downregulation of MERTK (2017)
- Tryptase-catalyzed core histone truncation (2017)
- Allele-specific transcription factor binding in liver and cervix cells unveils many likely drivers of GWAS signals (2016)
- Allele-specific transcription factor binding to common and rare variants associated with disease and gene expression (2016)
- ZBED6 negatively regulates insulin content, glucose-stimulated insulin secretion, neuronal differentiation and cell aggregation in MIN6 cells (2016)
- Knock-down of ZBED6 in insulin-producing cells promotes N-cadherin junctions between beta-cells and neural crest stem cells in vitro (2016)
- lobChIP (2015)
- Nucleosome regulatory dynamics in response to TGF-beta treatment in HepG2 cells (2014)
- Nucleosome regulatory dynamics in response to TGF beta (2014)
- ZBED6 Modulates the Transcription of Myogenic Genes in Mouse Myoblast Cells (2014)
- Integration of genome-wide of Stat3 binding and epigenetic modification mapping with transcriptome reveals novel Stat3 target genes in glioma cells (2014)
- ChIP-seq in steatohepatitis and normal liver tissue identifies candidate disease mechanisms related to progression to cancer (2013)
- Transcription factor ZBED6 affects gene expression, proliferation, and cell death in pancreatic beta cells (2013)
- Cancer associated epigenetic transitions identified by genome-wide histone methylation binding profiles in human colorectal cancer samples and paired normal mucosa (2011)
- ZBED6, a novel transcription factor derived from a domesticated DNA transposon regulates IGF2 expression and muscle growth (2009)
- Differential binding and co-binding pattern of FOXA1 and FOXA3 and their relation to H3K4me3 in HepG2 cells revealed by ChIP-seq (2009)
- Molecular interactions between HNF4a, FOXA2 and GABP identified at regulatory DNA elements through ChIP-sequencing (2009)
- Molecular interactions between HNF4a, FOXA2 and GABP identified at regulatory DNA elements through ChIP-sequencing (2009)
- Influence of adenosine triphosphate and ABCB1 (MDR1) genotype on the P-glycoprotein-dependent transfer of saquinavir in the dually perfused human placenta (2008)
- Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project (2007)
- Placental transfer of quetiapine in relation to P-glycoprotein activity (2007)
- Common sequence variants in the LOXL1 gene confer susceptibility to exfoliation glaucoma (2007)
- Functional role of P-glycoprotein in the human blood-placental barrier (2005)
- Binding sites for metabolic disease related transcription factors inferred at base pair resolution by chromatin immunoprecipitation and genomic microarrays (2005)
- Common VKORC1 and GGCX polymorphisms associated with warfarin dose (2005)
- Warfarin sensitivity related to CYP2C9, CYP3A5, ABCB1 (MDR1) and other factors (2004)
- The evolution of the allorecognition gene repertoire in the Podospora anserina species complex
- ChIP-seq in steatohepatitis and normal liver tissue identifies candidate disease mechanisms related to progression to cancer
- The role of ZBED6 in transcriptional regulation studied by transcriptome analysis after RNAi in mouse myoblasts
- Nucleosome landscape in HepG2 cells in relation to NFY, HNF4a and FOXA2 binding sites
Books
