Klev Diamanti

Intra- and inter-individual metabolic profiling highlights carnitine and lysophosphatidylcholine pathways as key molecular defects in type 2 diabetes

Diamanti, Klev; Cavalli, Marco; Pan, Gang; Pereira, Maria J et al.

Part of Scientific Reports, 2019

• DOI for Intra- and inter-individual metabolic profiling highlights carnitine and lysophosphatidylcholine pathways as key molecular defects in type 2 diabetes
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Integrating multi-omics for type 2 diabetes: Data science and big data towards personalized medicine

Diamanti, Klev

2019

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Maps of context-dependent putative regulatory regions and genomic signal interactions

Diamanti, Klev; Umer, Husen M.; Kruczyk, Marcin; Dabrowski, Michal J. et al.

Part of Nucleic Acids Research, p. 9110-9120, 2016

• DOI for Maps of context-dependent putative regulatory regions and genomic signal interactions
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A Significant Regulatory Mutation Burden at a High-Affinity Position of the CTCF Motif in Gastrointestinal Cancers

Umer, Husen M.; Cavalli, Marco; Dabrowski, Michal J.; Diamanti, Klev et al.

Part of Human Mutation, p. 904-913, 2016

• DOI for A Significant Regulatory Mutation Burden at a High-Affinity Position of the CTCF Motif in Gastrointestinal Cancers

Interpretable machine learning identifies paediatric Systemic Lupus Erythematosus subtypes based on gene expression data

Yones, Sara A.; Annett, Alva; Stoll, Patricia; Diamanti, Klev et al.

Part of Scientific Reports, 2022

• DOI for Interpretable machine learning identifies paediatric Systemic Lupus Erythematosus subtypes based on gene expression data

Machine Learning-Based Analysis of Glioma Grades Reveals Co-Enrichment

Garbulowski, Mateusz; Smolinska Garbulowska, Karolina; Cabuk, Ugur; Younes, Sara et al.

Part of Cancers, 2022

• DOI for Machine Learning-Based Analysis of Glioma Grades Reveals Co-Enrichment
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Organ-specific metabolic pathways distinguish prediabetes, type 2 diabetes, and normal tissues

Diamanti, Klev; Cavalli, Marco; Pereira, Maria J.; Pan, Gang et al.

Part of Cell Reports Medicine, 2022

• DOI for Organ-specific metabolic pathways distinguish prediabetes, type 2 diabetes, and normal tissues
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Mapping chromatin accessibility and active regulatory elements reveals pathological mechanisms in human gliomas

Stepniak, Karolina; Machnicka, Magdalena A.; Mieczkowski, Jakub; Macioszek, Anna et al.

Part of Nature Communications, 2021

• DOI for Mapping chromatin accessibility and active regulatory elements reveals pathological mechanisms in human gliomas
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Multifaceted regulation of hepatic lipid metabolism by YY1

Pan, Gang; Diamanti, Klev; Cavalli, Marco; Gutierrez, Ariadna Lara et al.

Part of Life Science Alliance, 2021

• DOI for Multifaceted regulation of hepatic lipid metabolism by YY1
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Interpretable machine learning identifies paediatric Systemic Lupus Erythematosus subtypes based on gene expression data

Yones, Sara A.; Annett, Alva; Stoll, Patricia; Diamanti, Klev et al.

Part of Scientific Reports, 2022

• DOI for Interpretable machine learning identifies paediatric Systemic Lupus Erythematosus subtypes based on gene expression data

Machine Learning-Based Analysis of Glioma Grades Reveals Co-Enrichment

Garbulowski, Mateusz; Smolinska Garbulowska, Karolina; Cabuk, Ugur; Younes, Sara et al.

Part of Cancers, 2022

• DOI for Machine Learning-Based Analysis of Glioma Grades Reveals Co-Enrichment
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Organ-specific metabolic pathways distinguish prediabetes, type 2 diabetes, and normal tissues

Diamanti, Klev; Cavalli, Marco; Pereira, Maria J.; Pan, Gang et al.

Part of Cell Reports Medicine, 2022

• DOI for Organ-specific metabolic pathways distinguish prediabetes, type 2 diabetes, and normal tissues
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Mapping chromatin accessibility and active regulatory elements reveals pathological mechanisms in human gliomas

Stepniak, Karolina; Machnicka, Magdalena A.; Mieczkowski, Jakub; Macioszek, Anna et al.

Part of Nature Communications, 2021

• DOI for Mapping chromatin accessibility and active regulatory elements reveals pathological mechanisms in human gliomas
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Multifaceted regulation of hepatic lipid metabolism by YY1

Pan, Gang; Diamanti, Klev; Cavalli, Marco; Gutierrez, Ariadna Lara et al.

Part of Life Science Alliance, 2021

• DOI for Multifaceted regulation of hepatic lipid metabolism by YY1
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The Thioesterase ACOT1 as a Regulator of Lipid Metabolism in Type 2 Diabetes Detected in a Multi-Omics Study of Human Liver

Cavalli, Marco; Diamanti, Klev; Dang, Yonglong; Xing, Pengwei et al.

Part of Omics, p. 652-659, 2021

• DOI for The Thioesterase ACOT1 as a Regulator of Lipid Metabolism in Type 2 Diabetes Detected in a Multi-Omics Study of Human Liver
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Single nucleus transcriptomics data integration recapitulates the major cell types in human liver

Diamanti, Klev; Inda Díaz, Juan Salvador; Raine, Amanda; Pan, Gang et al.

Part of Hepatology Research, p. 233-238, 2021

• DOI for Single nucleus transcriptomics data integration recapitulates the major cell types in human liver
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MetaFetcheR: An R Package for Complete Mapping of Small-Compound Data

Yones, Sara A.; Csombordi, Rajmund; Komorowski, Jan; Diamanti, Klev

Part of Metabolites, 2021

• DOI for MetaFetcheR: An R Package for Complete Mapping of Small-Compound Data
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R.ROSETTA: an interpretable machine learning framework

Garbulowski, Mateusz; Diamanti, Klev; Smolinska, Karolina; Baltzer, Nicholas et al.

Part of BMC Bioinformatics, 2021

• DOI for R.ROSETTA: an interpretable machine learning framework
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Interpretable Machine Learning Reveals Dissimilarities Between Subtypes of Autism Spectrum Disorder

Garbulowski, Mateusz; Smolinska Garbulowska, Karolina; Diamanti, Klev; Pan, Gang et al.

Part of Frontiers in Genetics, 2021

• DOI for Interpretable Machine Learning Reveals Dissimilarities Between Subtypes of Autism Spectrum Disorder
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Nucleolar rDNA folds into condensed foci with a specific combination of epigenetic marks

Kutashev, Konstantin O.; Franek, Michal; Diamanti, Klev; Komorowski, Jan et al.

Part of The Plant Journal, p. 1534-1548, 2021

• DOI for Nucleolar rDNA folds into condensed foci with a specific combination of epigenetic marks

Integration of whole-body [¹⁸F]FDG PET/MRI with non-targeted metabolomics can provide new insights on tissue-specific insulin resistance in type 2 diabetes

Diamanti, Klev; Visvanathar, Robin; Pereira, Maria J.; Cavalli, Marco et al.

Part of Scientific Reports, 2020

• DOI for Integration of whole-body [¹⁸F]FDG PET/MRI with non-targeted metabolomics can provide new insights on tissue-specific insulin resistance in type 2 diabetes
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Cancer LncRNA Census reveals evidence for deep functional conservation of long noncoding RNAs in tumorigenesis

Carlevaro-Fita, Joana; Lanzos, Andres; Feuerbach, Lars; Hong, Chen et al.

Part of Communications Biology, 2020

• DOI for Cancer LncRNA Census reveals evidence for deep functional conservation of long noncoding RNAs in tumorigenesis
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A Multi-Omics Approach to Liver Diseases: Integration of Single Nuclei Transcriptomics with Proteomics and HiCap Bulk Data in Human Liver

Cavalli, Marco; Diamanti, Klev; Pan, Gang; Spalinskas, Rapolas et al.

Part of Omics, p. 180-194, 2020

• DOI for A Multi-Omics Approach to Liver Diseases: Integration of Single Nuclei Transcriptomics with Proteomics and HiCap Bulk Data in Human Liver
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Analyses of non-coding somatic drivers in 2,658 cancer whole genomes

Rheinbay, Esther; Nielsen, Morten Muhlig; Abascal, Federico; Wala, Jeremiah A. et al.

Part of Nature, p. 102-111, 2020

• DOI for Analyses of non-coding somatic drivers in 2,658 cancer whole genomes
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Pan-cancer analysis of whole genomes

Campbell, Peter J.; Diamanti, Klev; Komorowski, Jan; Umer, Husen Muhammad et al.

Part of Nature, p. 82-93, 2020

• DOI for Pan-cancer analysis of whole genomes
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Intra- and inter-individual metabolic profiling highlights carnitine and lysophosphatidylcholine pathways as key molecular defects in type 2 diabetes

Diamanti, Klev; Cavalli, Marco; Pan, Gang; Pereira, Maria J et al.

Part of Scientific Reports, 2019

• DOI for Intra- and inter-individual metabolic profiling highlights carnitine and lysophosphatidylcholine pathways as key molecular defects in type 2 diabetes
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Unveiling new interdependencies between significant DNA methylation sites, gene expression profiles and glioma patients survival

Dabrowski, Michal J.; Draminski, Michal; Diamanti, Klev; Stepniak, Karolina et al.

Part of Scientific Reports, 2018

• DOI for Unveiling new interdependencies between significant DNA methylation sites, gene expression profiles and glioma patients survival
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Maps of context-dependent putative regulatory regions and genomic signal interactions

Diamanti, Klev; Umer, Husen M.; Kruczyk, Marcin; Dabrowski, Michal J. et al.

Part of Nucleic Acids Research, p. 9110-9120, 2016

• DOI for Maps of context-dependent putative regulatory regions and genomic signal interactions
• Download full text (pdf) of Maps of context-dependent putative regulatory regions and genomic signal interactions

A Significant Regulatory Mutation Burden at a High-Affinity Position of the CTCF Motif in Gastrointestinal Cancers

Umer, Husen M.; Cavalli, Marco; Dabrowski, Michal J.; Diamanti, Klev et al.

Part of Human Mutation, p. 904-913, 2016

• DOI for A Significant Regulatory Mutation Burden at a High-Affinity Position of the CTCF Motif in Gastrointestinal Cancers

Single Nuclei Transcriptome Analysis of Human Liver with Integration of Proteomics and Capture Hi-C Bulk Tissue Data

Cavalli, Marco; Diamanti, Klev; Pan, Gang; Rapolas, Spalinskas et al.

Discovering Networks of Interdependent Features in High-Dimensional Problems

Dramiński, Michał; Da̧browski, Michał J.; Diamanti, Klev; Koronacki, Jacek et al.

Part of Big Data Analysis, p. 285-304, Springer, 2016

• DOI for Discovering Networks of Interdependent Features in High-Dimensional Problems

Integrating multi-omics for type 2 diabetes: Data science and big data towards personalized medicine

Diamanti, Klev

2019

• Download full text (pdf) of Integrating multi-omics for type 2 diabetes: Data science and big data towards personalized medicine

Supplementary material: Interpretable machine learning identifies paediatric Systemic Lupus Erythematosus subtypes based on gene expression data

Yones, Sara A.; Annett, Alva; Stoll, Patricia; Diamanti, Klev et al.

2021

• Download full text (pdf) of Supplementary material: Interpretable machine learning identifies paediatric Systemic Lupus Erythematosus subtypes based on gene expression data

SUPPLEMENTARY MATERIAL: VisuNet: an interactive tool for rule network visualization of rule-based learning models

Smolinska Garbulowska, Karolina; Garbulowski, Mateusz; Diamanti, Klev; Davoy, Xavier et al.

2021

• Download full text (pdf) of SUPPLEMENTARY MATERIAL: VisuNet: an interactive tool for rule network visualization of rule-based learning models

Supplementary tables:MetaFetcheR: An R package for complete mapping of small compound data

Yones, Sara A.; Csombordi, Rajmund; Komorowski, Jan; Diamanti, Klev

2021

• Download full text (pdf) of Supplementary tables:MetaFetcheR: An R package for complete mapping of small compound data

SUPPLEMENTARY MATERIAL: Machine learning-based analysis of glioma grades reveals co-enrichment

Garbulowski, Mateusz; Smolinska Garbulowska, Karolina; Çabuk, Uğur; Yones, Sara A. et al.

2021

Integration of whole-body PET/MRI with non-targeted metabolomics provides new insights into insulin sensitivity of various tissues

Diamanti, Klev; Visvanathar, Robin; Pereira, Maria J; Cavalli, Marco et al.

VisuNet: an interactive tool for rule network visualization of rule-based learning models

Smolinska, Karolina; Garbulowski, Mateusz; Diamanti, Klev; Davoy, Xavier et al.

Part of SUPPLEMENTARY MATERIAL: VisuNet: an interactive tool for rule network visualization of rule-based learning models