Kim Kultima

Fibromyalgia patients have altered lipid concentrations associated with disease symptom severity and anti-satellite glial cell IgG antibodies

Jakobsson, Jenny; Menezes, Joana; Krock, Emerson; Hunt, Matthew A. et al.

Part of Journal of Pain, 2025

• DOI for Fibromyalgia patients have altered lipid concentrations associated with disease symptom severity and anti-satellite glial cell IgG antibodies
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Conformal prediction enables disease course prediction and allows individualized diagnostic uncertainty in multiple sclerosis

Sreenivasan, Akshai Parakkal; Vaivade, Aina; Noui, Yassine; Emami Khoonsari, Payam et al.

Part of npj Digital Medicine, 2025

• DOI for Conformal prediction enables disease course prediction and allows individualized diagnostic uncertainty in multiple sclerosis
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CCL25 in the cerebrospinal fluid is negatively correlated with fatigue in chronic pain patients

Rosenström, Alexander H. C.; Ahmed, Aisha Siddiqah; Bersellini Farinotti, Alex; Kultima, Kim et al.

Part of Brain, behavior, and immunity, p. 54-64, 2025

• DOI for CCL25 in the cerebrospinal fluid is negatively correlated with fatigue in chronic pain patients
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Bile acid metabolism in multiple sclerosis is perturbed and associated with the risk of confirmed disability worsening

Erngren, Ida; Vaivade, Aina; Carlsson, Henrik; Al-Grety, Asma et al.

Part of BMC Medicine, 2025

• DOI for Bile acid metabolism in multiple sclerosis is perturbed and associated with the risk of confirmed disability worsening
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Associations of PFAS and OH-PCBs with risk of multiple sclerosis onset and disability worsening

Vaivade, Aina; Erngren, Ida; Carlsson, Henrik; Freyhult, Eva et al.

Part of Nature Communications, 2025

• DOI for Associations of PFAS and OH-PCBs with risk of multiple sclerosis onset and disability worsening
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Fibromyalgia patients have altered lipid concentrations associated with disease symptom severity and anti-satellite glial cell IgG antibodies

Jakobsson, Jenny; Menezes, Joana; Krock, Emerson; Hunt, Matthew A. et al.

Part of Journal of Pain, 2025

• DOI for Fibromyalgia patients have altered lipid concentrations associated with disease symptom severity and anti-satellite glial cell IgG antibodies
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Conformal prediction enables disease course prediction and allows individualized diagnostic uncertainty in multiple sclerosis

Sreenivasan, Akshai Parakkal; Vaivade, Aina; Noui, Yassine; Emami Khoonsari, Payam et al.

Part of npj Digital Medicine, 2025

• DOI for Conformal prediction enables disease course prediction and allows individualized diagnostic uncertainty in multiple sclerosis
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CCL25 in the cerebrospinal fluid is negatively correlated with fatigue in chronic pain patients

Rosenström, Alexander H. C.; Ahmed, Aisha Siddiqah; Bersellini Farinotti, Alex; Kultima, Kim et al.

Part of Brain, behavior, and immunity, p. 54-64, 2025

• DOI for CCL25 in the cerebrospinal fluid is negatively correlated with fatigue in chronic pain patients
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Bile acid metabolism in multiple sclerosis is perturbed and associated with the risk of confirmed disability worsening

Erngren, Ida; Vaivade, Aina; Carlsson, Henrik; Al-Grety, Asma et al.

Part of BMC Medicine, 2025

• DOI for Bile acid metabolism in multiple sclerosis is perturbed and associated with the risk of confirmed disability worsening
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Associations of PFAS and OH-PCBs with risk of multiple sclerosis onset and disability worsening

Vaivade, Aina; Erngren, Ida; Carlsson, Henrik; Freyhult, Eva et al.

Part of Nature Communications, 2025

• DOI for Associations of PFAS and OH-PCBs with risk of multiple sclerosis onset and disability worsening
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Neuroglial Biomarkers for Risk Assessment of Ischemic Stroke and Other Cardiovascular Events in Patients with Atrial Fibrillation Not Receiving Oral Anticoagulation

Aulin, Julia; Sjölin, Karl; Lindbäck, Johan; Benz, Alexander P. et al.

Part of Journal of the American Heart Association, 2025

• DOI for Neuroglial Biomarkers for Risk Assessment of Ischemic Stroke and Other Cardiovascular Events in Patients with Atrial Fibrillation Not Receiving Oral Anticoagulation
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MIF-Modulated Spinal Proteins Associated with Persistent Bladder Pain: A Proteomics Study

Ye, Shaojing; Agalave, Nilesh M.; Ma, Fei; Mahmood, Dlovan F. D. et al.

Part of International Journal of Molecular Sciences, 2024

• DOI for MIF-Modulated Spinal Proteins Associated with Persistent Bladder Pain: A Proteomics Study
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Lumbosacral spinal proteomic changes during PAR4-induced persistent bladder pain

Ye, Shaojing; Agalave, Nilesh M.; Ma, Fei; Mahmood, Dlovan F. D. et al.

Part of Neuroscience Letters, 2024

• DOI for Lumbosacral spinal proteomic changes during PAR4-induced persistent bladder pain

Patient result monitoring of HbA_1c shows small seasonal variations and steady decrease over more than 10 years

Rollborn, Niclas; Kultima, Kim; Larsson, Anders

Part of Clinical Chemistry and Laboratory Medicine, p. 2534-2539, 2024

• DOI for Patient result monitoring of HbA_1c shows small seasonal variations and steady decrease over more than 10 years
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Neurofilament Light Chain and Risk of Stroke in Patients With Atrial Fibrillation

Aulin, Julia; Sjölin, Karl; Lindbäck, Johan; Benz, Alexander P et al.

Part of Circulation, p. 1090-1100, 2024

• DOI for Neurofilament Light Chain and Risk of Stroke in Patients With Atrial Fibrillation

Unraveling the neuroimmune interface in chronic pain-the association between cytokines in the cerebrospinal fluid and pain in patients with lumbar disk herniation or degenerative disk disease

Rosenström, Alexander H. C.; Ahmed, Aisha Siddiqah; Kultima, Kim; Freyhult, Eva et al.

Part of Pain, 2024

• DOI for Unraveling the neuroimmune interface in chronic pain-the association between cytokines in the cerebrospinal fluid and pain in patients with lumbar disk herniation or degenerative disk disease

Analysis of HbA1c using microfluidic card (Capitainer qDBS card) as a pre-step before determination of the HbA1c value with an immunological method

Rollborn, Niclas; Larsson, Anders; Kultima, Kim

Part of Scandinavian Journal of Clinical and Laboratory Investigation, p. 11-15, 2024

• DOI for Analysis of HbA1c using microfluidic card (Capitainer qDBS card) as a pre-step before determination of the HbA1c value with an immunological method
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Fibromyalgia patients with elevated levels of anti-satellite glia cell immunoglobulin G antibodies present with more severe symptoms

Krock, Emerson; Morado-Urbina, Carlos E.; Menezes, Joana; Hunt, Matthew A. et al.

Part of Pain, p. 1828-1840, 2023

• DOI for Fibromyalgia patients with elevated levels of anti-satellite glia cell immunoglobulin G antibodies present with more severe symptoms

Plasma apolipoprotein E levels, isoform composition, and dimer profile in relation to plasma lipids in racially diverse patients with Alzheimer's disease and mild cognitive impairment

Giannisis, Andreas; Al-Grety, Asma; Carlsson, Henrik; Howell, Jennifer C. et al.

Part of Alzheimer's Research & Therapy, 2023

• DOI for Plasma apolipoprotein E levels, isoform composition, and dimer profile in relation to plasma lipids in racially diverse patients with Alzheimer's disease and mild cognitive impairment
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Cerebrospinal fluid concentrations of CXCL13 and sCD27 are decreased after autologous hematopoietic stem cell transplantation for multiple sclerosis

Lundblad, Katarina; Zjukovskaja, Christina; Larsson, Anders; Cherif, Honar et al.

Part of Neurology, 2023

• DOI for Cerebrospinal fluid concentrations of CXCL13 and sCD27 are decreased after autologous hematopoietic stem cell transplantation for multiple sclerosis
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Disease phenotype prediction in multiple sclerosis

Herman, Stephanie; Arvidsson McShane, Staffan; Zhukovsky, Christina; Emami, Payam et al.

Part of iScience, 2023

• DOI for Disease phenotype prediction in multiple sclerosis
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Levels of inflammatory cytokines MCP-1, CCL4, and PD-L1 in CSF differentiate idiopathic normal pressure hydrocephalus from neurodegenerative diseases

Braun, Madelen; Boström, Gustaf; Ingelsson, Martin; Kilander, Lena et al.

Part of Fluids and Barriers of the CNS, 2023

• DOI for Levels of inflammatory cytokines MCP-1, CCL4, and PD-L1 in CSF differentiate idiopathic normal pressure hydrocephalus from neurodegenerative diseases
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Reference Intervals for Plasma Free Kappa and Lambda Chains and Kappa/Lambda Ratio using PENIA

Rollborn, Niclas; Kultima, Kim; Larsson, Anders

Part of Clinical Laboratory, 2023

• DOI for Reference Intervals for Plasma Free Kappa and Lambda Chains and Kappa/Lambda Ratio using PENIA

Combining the targeted and untargeted screening of environmental contaminants reveals associations between PFAS exposure and vitamin D metabolism in human plasma.

Carlsson, Henrik; Sreenivasan, Akshai P.; Erngren, Ida; Larsson, Anders et al.

Part of Environmental Science, p. 1116-1130, 2023

• DOI for Combining the targeted and untargeted screening of environmental contaminants reveals associations between PFAS exposure and vitamin D metabolism in human plasma.
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Autologous hematopoietic stem cell transplantation significantly alters circulating ceramides in peripheral blood of relapsing-remitting multiple sclerosis patients

Vaivade, Aina; Wiberg, Anna; Khoonsari, Payam Emami; Carlsson, Henrik et al.

Part of Lipids in Health and Disease, 2023

• DOI for Autologous hematopoietic stem cell transplantation significantly alters circulating ceramides in peripheral blood of relapsing-remitting multiple sclerosis patients
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Cerebrospinal fluid cytokines after autologous haematopoietic stem cell transplantation and intrathecal rituximab treatment for multiple sclerosis

Burman, Joachim; Zhukovskaja, Christina; Svenningsson, Anders; Freyhult, Eva et al.

Part of Brain Communications, 2023

• DOI for Cerebrospinal fluid cytokines after autologous haematopoietic stem cell transplantation and intrathecal rituximab treatment for multiple sclerosis
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Accuracy of determination of free light chains (Kappa and Lambda) in plasma and serum by Swedish laboratories as monitored by external quality assessment

Rollborn, Niclas; Jakobsson, Jenny; Campbell, Andrew; Nordin, Gunnar et al.

Part of Clinical Biochemistry, p. 47-53, 2023

• DOI for Accuracy of determination of free light chains (Kappa and Lambda) in plasma and serum by Swedish laboratories as monitored by external quality assessment
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Pain-like behavior in the collagen antibody-induced arthritis model is regulated by lysophosphatidic acid and activation of satellite glia cells.

Su, Jie; Krock, Emerson; Barde, Swapnali; Delaney, Ada et al.

Part of Brain, behavior, and immunity, p. 214-230, 2022

• DOI for Pain-like behavior in the collagen antibody-induced arthritis model is regulated by lysophosphatidic acid and activation of satellite glia cells.
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Serum Neurofilament Light Chain in Patients With Atrial Fibrillation

Sjölin, Karl; Aulin, Julia; Wallentin, Lars; Eriksson, Niclas et al.

Part of Journal of the American Heart Association, 2022

• DOI for Serum Neurofilament Light Chain in Patients With Atrial Fibrillation
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Near-patient testing of blood cell counts using HemoScreen™ point of care instrument in a primary care setting

Larsson, Anders; Kultima, Kim; Lipcsey, Miklós; Karlsson, Bo

Part of Health and Primary Care, 2022

• DOI for Near-patient testing of blood cell counts using HemoScreen™ point of care instrument in a primary care setting
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Cerebrospinal Fluid in Classical Trigeminal Neuralgia: An Exploratory Study on Candidate Biomarkers

Svedung-Wettervik, Teodor; Folkvaljon, Dick; Gordh, Torsten; Freyhult, Eva et al.

Part of Biomedicines, 2022

• DOI for Cerebrospinal Fluid in Classical Trigeminal Neuralgia: An Exploratory Study on Candidate Biomarkers
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Distribution of five clinically important neuroglial proteins in the human brain.

Sjölin, Karl; Kultima, Kim; larsson, Anders; Freyhult, Eva et al.

Part of Molecular brain, 2022

• DOI for Distribution of five clinically important neuroglial proteins in the human brain.
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White matter changes should not exclude patients with idiopathic normal pressure hydrocephalus from shunt surgery

Snöbohm, Carl; Malmberg, Filip; Freyhult, Eva; Kultima, Kim et al.

Part of Fluids and Barriers of the CNS, 2022

• DOI for White matter changes should not exclude patients with idiopathic normal pressure hydrocephalus from shunt surgery
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Higher levels of neurofilament light chain and total tau in CSF are associated with negative outcome after shunt surgery in patients with normal pressure hydrocephalus

Braun, Madelen; Bjurnemark, Caroline; Seo, Woosung; Freyhult, Eva et al.

Part of Fluids and Barriers of the CNS, 2022

• DOI for Higher levels of neurofilament light chain and total tau in CSF are associated with negative outcome after shunt surgery in patients with normal pressure hydrocephalus
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Evaluation of polarity switching for untargeted lipidomics using liquid chromatography coupled to high resolution mass spectrometry

Carlsson, Henrik; Vaivade, Aina; Emami Khoonsari, Payam; Burman, Joachim et al.

Part of Journal of chromatography. B, 2022

• DOI for Evaluation of polarity switching for untargeted lipidomics using liquid chromatography coupled to high resolution mass spectrometry
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Effects of denosumab treatment on the expression of receptor activator of nuclear kappa-B ligand (RANKL) and TNF-receptor TNFRSF9 after total hip arthroplasty-results from a randomized placebo-controlled clinical trial.

Sköld, Caroline; Kultima, Kim; Freyhult, Eva; Larsson, Anders et al.

Part of Osteoporosis International, p. 1-8, 2022

• DOI for Effects of denosumab treatment on the expression of receptor activator of nuclear kappa-B ligand (RANKL) and TNF-receptor TNFRSF9 after total hip arthroplasty-results from a randomized placebo-controlled clinical trial.
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Biomarkers of demyelination and axonal damage are decreased after autologous hematopoietic stem cell transplantation for multiple sclerosis

Zhukovsky, Christina; Larsson, Anders; Cherif, Honar; Kultima, Kim et al.

Part of Multiple Sclerosis and Related Disorders, 2022

• DOI for Biomarkers of demyelination and axonal damage are decreased after autologous hematopoietic stem cell transplantation for multiple sclerosis
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Plasma apolipoprotein E levels in longitudinally followed patients with mild cognitive impairment and Alzheimer's disease

Giannisis, Andreas; Al-Grety, Asma; Carlsson, Henrik; Patra, Kalicharan et al.

Part of Alzheimer's Research & Therapy, 2022

• DOI for Plasma apolipoprotein E levels in longitudinally followed patients with mild cognitive impairment and Alzheimer's disease
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Lysophophatidylcholine 16:0 mediates chronic joint pain associated to rheumatic diseases through acid-sensing ion channel 3

Jacquot, F.; Khoury, S.; Labrum, B.; Delanoe, K. et al.

Part of Pain, p. 1999-2013, 2022

• DOI for Lysophophatidylcholine 16:0 mediates chronic joint pain associated to rheumatic diseases through acid-sensing ion channel 3
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Predicting protein network topology clusters from chemical structure using deep learning

Sreenivasan, Akshai P.; Harrison, Philip J; Schaal, Wesley; Matuszewski, Damian J. et al.

Part of Journal of Cheminformatics, 2022

• DOI for Predicting protein network topology clusters from chemical structure using deep learning
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Strong Associations Between Early Tubular Damage and Urinary Cytokine, Chemokine, and Growth Factor Levels in Elderly Males and Females

Fellström, Bengt; Helmersson, Johanna; Lind, Lars; Soveri, Inga et al.

Part of Journal of Interferon and Cytokine Research, p. 283-290, 2021

• DOI for Strong Associations Between Early Tubular Damage and Urinary Cytokine, Chemokine, and Growth Factor Levels in Elderly Males and Females

Albumin Urinary Excretion Is Associated with Increased Levels of Urinary Chemokines, Cytokines, and Growth Factors Levels in Humans

Fellström, Bengt; Helmersson Karlqvist, Johanna; Lind, Lars; Soveri, Inga et al.

Part of Biomolecules, 2021

• DOI for Albumin Urinary Excretion Is Associated with Increased Levels of Urinary Chemokines, Cytokines, and Growth Factors Levels in Humans
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Approaches for containerized scientific workflows in cloud environments with applications in life science

Spjuth, Ola; Capuccini, Marco; Carone, Matteo; Larsson, Anders et al.

Part of F1000 Research, p. 513-513, 2021

• DOI for Approaches for containerized scientific workflows in cloud environments with applications in life science

Metabolomics of Cerebrospinal Fluid from Healthy Subjects Reveal Metabolites Associated with Ageing

Carlsson, Henrik; Rollborn, Niclas; Herman, Stephanie; Freyhult, Eva et al.

Part of Metabolites, 2021

• DOI for Metabolomics of Cerebrospinal Fluid from Healthy Subjects Reveal Metabolites Associated with Ageing
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Urokinase, CX3CL1, CCL2, TRAIL and IL-18 induced by interferon-β treatment

Zhukovsky, Christina; Herman, Stephanie; Wiberg, Anna; Cunningham, Janet et al.

Part of Acta Neurologica Scandinavica, p. 602-607, 2021

• DOI for Urokinase, CX3CL1, CCL2, TRAIL and IL-18 induced by interferon-β treatment
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Different Inflammatory Signatures in Alzheimer's Disease and Frontotemporal Dementia Cerebrospinal Fluid

Boström, Gustaf; Freyhult, Eva; Virhammar, Johan; Alcolea, Daniel et al.

Part of Journal of Alzheimer's Disease, p. 629-640, 2021

• DOI for Different Inflammatory Signatures in Alzheimer's Disease and Frontotemporal Dementia Cerebrospinal Fluid
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Multi‐cohort profiling reveals elevated CSF levels of brain‐enriched proteins in Alzheimer’s disease

Bergström, Sofia; Remnestål, Julia; Yousef, Jamil; Olofsson, Jennie et al.

Part of Annals of Clinical and Translational Neurology, p. 1456-1470, 2021

• DOI for Multi‐cohort profiling reveals elevated CSF levels of brain‐enriched proteins in Alzheimer’s disease
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Sex-dependent role of microglia in disulfide high mobility group box 1 protein-mediated mechanical hypersensitivity

Agalave, Nilesh M.; Rudjito, Resti; Farinotti, Alex Bersellini; Emami Khoonsari, Payam et al.

Part of Pain, p. 446-458, 2021

• DOI for Sex-dependent role of microglia in disulfide high mobility group box 1 protein-mediated mechanical hypersensitivity

Metabolomics: The Stethoscope for the Twenty-First Century

Ashrafian, Hutan; Sounderajah, Viknesh; Glen, Robert; Ebbels, Timothy et al.

Part of Medical principles and practice, p. 301-310, 2021

• DOI for Metabolomics: The Stethoscope for the Twenty-First Century
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Metabolic drift in the aging nervous system is reflected in human cerebrospinal fluid

Peters, Kristian; Herman, Stephanie; Emami Khoonsari, Payam; Burman, Joachim et al.

Part of Scientific Reports, 2021

• DOI for Metabolic drift in the aging nervous system is reflected in human cerebrospinal fluid
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Elevated inflammatory proteins in cerebrospinal fluid from patients with painful knee osteoarthritis are associated with reduced symptom severity

Palada, Vinko; Ahmed, Aisha Siddiqah; Freyhult, Eva; Hugo, Anders et al.

Part of Journal of Neuroimmunology, 2020

• DOI for Elevated inflammatory proteins in cerebrospinal fluid from patients with painful knee osteoarthritis are associated with reduced symptom severity
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Measurement of hydroxychloroquine in blood from SLE patients using LC-HRMS: Evaluation of whole blood, plasma and serum as sample matrices

Carlsson, Henrik; Hjorton, Karin; Abujrais, Sandy; Rönnblom, Lars et al.

Part of Arthritis Research & Therapy, 2020

• DOI for Measurement of hydroxychloroquine in blood from SLE patients using LC-HRMS: Evaluation of whole blood, plasma and serum as sample matrices
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Proteomics-Based Characterization of miR-574-5p Decoy to CUGBP1 Suggests Specificity for mPGES-1 Regulation in Human Lung Cancer Cells

Emmerich, Anne C.; Wellstein, Julia; Ossipova, Elena; Baumann, Isabel et al.

Part of Frontiers in Pharmacology, 2020

• DOI for Proteomics-Based Characterization of miR-574-5p Decoy to CUGBP1 Suggests Specificity for mPGES-1 Regulation in Human Lung Cancer Cells
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Calprotectin is superior to procalcitonin as a sepsis marker and predictor of 30-day mortality in intensive care patients

Larsson, Anders; Tydén, Jonas; Johansson, Joakim; Lipcsey, Miklós et al.

Part of Scandinavian Journal of Clinical and Laboratory Investigation, p. 156-161, 2020

• DOI for Calprotectin is superior to procalcitonin as a sepsis marker and predictor of 30-day mortality in intensive care patients
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Increased CSF Levels of Apolipoproteins and Complement Factors in Trigeminal Neuralgia Patients-In Depth Proteomic Analysis Using Mass Spectrometry

Abu Hamdeh, Sami; Emami Khoonsari, Payam; Shevchenko, Ganna; Gordh, Torsten et al.

Part of Journal of Pain, p. 1075-1084, 2020

• DOI for Increased CSF Levels of Apolipoproteins and Complement Factors in Trigeminal Neuralgia Patients-In Depth Proteomic Analysis Using Mass Spectrometry

Descriptive Proteome Analysis to Investigate Context-Dependent Treatment Responses to OXPHOS Inhibition in Colon Carcinoma Cells Grown as Monolayer and Multicellular Tumor Spheroids

Steinmetz, Julia; Senkowski, Wojciech; Lengqvist, Johan; Rubin, Jenny et al.

Part of ACS Omega, p. 17242-17254, 2020

• DOI for Descriptive Proteome Analysis to Investigate Context-Dependent Treatment Responses to OXPHOS Inhibition in Colon Carcinoma Cells Grown as Monolayer and Multicellular Tumor Spheroids
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Altered levels of CSF proteins in patients with FTD, presymptomatic mutation carriers and non-carriers

Remnestal, Julia; Oijerstedt, Linn; Ullgren, Abbe; Olofsson, Jennie et al.

Part of Translational Neurodegeneration, 2020

• DOI for Altered levels of CSF proteins in patients with FTD, presymptomatic mutation carriers and non-carriers
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Targeted metabolomics of CSF in healthy individuals and patients with secondary progressive multiple sclerosis using high-resolution mass spectrometry

Carlsson, Henrik; Abujrais, Sandy; Herman, Stephanie; Emami Khoonsari, Payam et al.

Part of Metabolomics, 2020

• DOI for Targeted metabolomics of CSF in healthy individuals and patients with secondary progressive multiple sclerosis using high-resolution mass spectrometry
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Profound but Transient Changes in the Inflammatory Milieu of the Blood During Autologous Hematopoietic Stem Cell Transplantation

Wiberg, Anna; Strömberg, Ulla Ohlsson; Herman, Stephanie; Kultima, Kim et al.

Part of Biology of blood and marrow transplantation, p. 50-57, 2020

• DOI for Profound but Transient Changes in the Inflammatory Milieu of the Blood During Autologous Hematopoietic Stem Cell Transplantation

The human CSF pain proteome

Emami Khoonsari, Payam; Ossipova, Elena; Lengqvist, Johan; Svensson, Camilla et al.

Part of Journal of Proteomics, p. 67-76, 2019

• DOI for The human CSF pain proteome

Circulating Levels of Interferon Regulatory Factor-5 Associates With Subgroups of Systemic Lupus Erythematosus Patients.

Idborg, Helena; Zandian, Arash; Ossipova, Elena; Wigren, Edvard et al.

Part of Frontiers in Immunology, 2019

• DOI for Circulating Levels of Interferon Regulatory Factor-5 Associates With Subgroups of Systemic Lupus Erythematosus Patients.
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A sensitive method detecting trace levels of levonorgestrel using LC-HRMS.

Abujrais, Sandy; Olovsson, Matts; Ahnoff, Martin; Rasmusson, Annica et al.

Part of Contraception, p. 247-249, 2019

• DOI for A sensitive method detecting trace levels of levonorgestrel using LC-HRMS.

Container-based bioinformatics with Pachyderm

Novella, Jon Ander; Emami Khoonsari, Payam; Herman, Stephanie; Whitenack, Daniel et al.

Part of Bioinformatics, p. 839-846, 2019

• DOI for Container-based bioinformatics with Pachyderm

PhenoMeNal: Processing and analysis of metabolomics data in the cloud

Peters, Kristian; Bradbury, James; Bergmann, Sven; Capuccini, Marco et al.

Part of GigaScience, 2019

• DOI for PhenoMeNal: Processing and analysis of metabolomics data in the cloud

Mass Spectrometry-Based Proteomics Approach Characterizes the Dual Functionality of miR-328 in Monocytes

Saul, Meike J.; Hegewald, Anett B.; Emmerich, Anne C.; Ossipova, Elena et al.

Part of Frontiers in Pharmacology, 2019

• DOI for Mass Spectrometry-Based Proteomics Approach Characterizes the Dual Functionality of miR-328 in Monocytes
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Inhibition of mPGES-1 or COX-2 Results in Different Proteomic and Lipidomic Profiles in A549 Lung Cancer Cells

Bergqvist, Filip; Ossipova, Elena; Idborg, Helena; Raouf, Joan et al.

Part of Frontiers in Pharmacology, 2019

• DOI for Inhibition of mPGES-1 or COX-2 Results in Different Proteomic and Lipidomic Profiles in A549 Lung Cancer Cells
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Alterations in the tyrosine and phenylalanine pathways revealed by biochemical profiling in cerebrospinal fluid of Huntington's disease subjects

Herman, Stephanie; Niemelä, Valter; Emami Khoonsari, Payam; Sundblom, Jimmy et al.

Part of Scientific Reports, 2019

• DOI for Alterations in the tyrosine and phenylalanine pathways revealed by biochemical profiling in cerebrospinal fluid of Huntington's disease subjects
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Interoperable and scalable data analysis with microservices: Applications in metabolomics

Emami Khoonsari, Payam; Moreno, Pablo; Bergmann, Sven; Burman, Joachim et al.

Part of Bioinformatics, p. 3752-3760, 2019

• DOI for Interoperable and scalable data analysis with microservices: Applications in metabolomics
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Biochemical Differences in Cerebrospinal Fluid between Secondary Progressive and Relapsing-Remitting Multiple Sclerosis

Herman, Stephanie; Åkerfeldt, Torbjörn; Spjuth, Ola; Burman, Joachim et al.

Part of Cells, 2019

• DOI for Biochemical Differences in Cerebrospinal Fluid between Secondary Progressive and Relapsing-Remitting Multiple Sclerosis
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Anti-inflammatory drugs with more penetration into the central nervous system may contribute to the treatment of trigeminal neuralgia Reply

Ericson, Hans; Abu Hamdeh, Sami; Freyhult, Eva; Stiger, Fredrik et al.

Part of Pain, p. 2898-2899, 2019

• DOI for Anti-inflammatory drugs with more penetration into the central nervous system may contribute to the treatment of trigeminal neuralgia Reply

Cerebrospinal fluid biomarkers of inflammation in trigeminal neuralgia patients operated with microvascular decompression

Ericson, Hans; Abu Hamdeh, Sami; Freyhult, Eva; Stiger, Fredrik et al.

Part of Pain, p. 2603-2611, 2019

• DOI for Cerebrospinal fluid biomarkers of inflammation in trigeminal neuralgia patients operated with microvascular decompression

Measurement of sCD27 in the cerebrospinal fluid identifies patients with neuroinflammatory disease

Feresiadou, Amalia; Nilsson, Kenneth; Ingelsson, Martin; Press, Rayomand et al.

Part of Journal of Neuroimmunology, p. 31-36, 2019

• DOI for Measurement of sCD27 in the cerebrospinal fluid identifies patients with neuroinflammatory disease

Cartilage-binding antibodies induce pain through immune complex-mediated activation of neurons

Farinotti, Alex Bersellini; Wigerblad, Gustaf; Nascimento, Diana; Bas, Duygu B. et al.

Part of Journal of Experimental Medicine, p. 1904-1924, 2019

• DOI for Cartilage-binding antibodies induce pain through immune complex-mediated activation of neurons
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Improved Differential Diagnosis of Alzheimer's Disease by Integrating ELISA and Mass Spectrometry-Based Cerebrospinal Fluid Biomarkers

Emami Khoonsari, Payam; Shevchenko, Ganna; Herman, Stephanie; Remnestal, Julia et al.

Part of Journal of Alzheimer's Disease, p. 639-651, 2019

• DOI for Improved Differential Diagnosis of Alzheimer's Disease by Integrating ELISA and Mass Spectrometry-Based Cerebrospinal Fluid Biomarkers
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Systematic Analysis of the Cerebrospinal Fluid Proteome of Fibromyalgia patients

Emami Khoonsari, Payam; Musunri, Sravani; Herman, Stephanie; Svensson, Camilla I et al.

Part of Journal of Proteomics, p. 35-43, 2019

• DOI for Systematic Analysis of the Cerebrospinal Fluid Proteome of Fibromyalgia patients

Exploring cerebrospinal fluid proteome in fibromyalgia

Ossipova, E.; Emami Khoonsari, Payam; Lengqvist, J.; Kosek, Eva et al.

Part of Annals of the Rheumatic Diseases, p. 1643-1644, 2018

• DOI for Exploring cerebrospinal fluid proteome in fibromyalgia

Integration of magnetic resonance imaging and protein and metabolite CSF measurements to enable early diagnosis of secondary progressive multiple sclerosis.

Herman, Stephanie; Emami Khoonsari, Payam; Tolf, Andreas; Steinmetz, Julia et al.

Part of Theranostics, p. 4477-4490, 2018

• DOI for Integration of magnetic resonance imaging and protein and metabolite CSF measurements to enable early diagnosis of secondary progressive multiple sclerosis.
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Spinal injection of newly identified cerebellin-1 and cerebellin-2 peptides induce mechanical hypersensitivity in mice

Sandor, Katalin; Krishnan, Shibu; Agalave, Nilesh Mohan; Krock, Emerson et al.

Part of Neuropeptides, p. 53-59, 2018

• DOI for Spinal injection of newly identified cerebellin-1 and cerebellin-2 peptides induce mechanical hypersensitivity in mice

Low molar excess of 4-oxo-2-nonenal and 4-hydroxy-2-nonenal promote oligomerization of alpha-synuclein through different pathways

Almandoz-Gil, Leire; Welander, Hedvig; Ihse, Elisabet; Khoonsari, Payam Emami et al.

Part of Free Radical Biology & Medicine, p. 421-431, 2017

• DOI for Low molar excess of 4-oxo-2-nonenal and 4-hydroxy-2-nonenal promote oligomerization of alpha-synuclein through different pathways
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Mass spectrometry based metabolomics for in vitro systems pharmacology: pitfalls, challenges, and computational solutions.

Herman, Stephanie; Emami Khoonsari, Payam; Aftab, Obaid; Krishnan, Shibu et al.

Part of Metabolomics, 2017

• DOI for Mass spectrometry based metabolomics for in vitro systems pharmacology: pitfalls, challenges, and computational solutions.
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Increased Release of Apolipoprotein E in Extracellular Vesicles Following Amyloid-β Protofibril Exposure of Neuroglial Co-Cultures

Nikitidou, Elisabeth; Emami Khoonsari, Payam; Shevchenko, Ganna; Ingelsson, Martin et al.

Part of Journal of Alzheimer's Disease, p. 305-321, 2017

• DOI for Increased Release of Apolipoprotein E in Extracellular Vesicles Following Amyloid-β Protofibril Exposure of Neuroglial Co-Cultures
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Characterizing the effects of epigenetic regulation in assays using peripheral blood mononuclear cells from patients with inflammatory diseases

Berg, L.; Sundström, Y.; Aftab, Obaid; Bergqvist, F. et al.

Part of Scandinavian Journal of Rheumatology, p. 44-45, 2016

Spinal Cord Stimulation Alters Protein Levels in the Cerebrospinal Fluid of Neuropathic Pain Patients: A Proteomic Mass Spectrometric Analysis

Lind, Anne-Li; Emami Khoonsari, Payam; Sjödin, Marcus; Katila, Lenka et al.

Part of Neuromodulation, p. 549-562, 2016

• DOI for Spinal Cord Stimulation Alters Protein Levels in the Cerebrospinal Fluid of Neuropathic Pain Patients: A Proteomic Mass Spectrometric Analysis

Analysis of the Cerebrospinal Fluid Proteome in Alzheimer's Disease

Emami Khoonsari, Payam; Haggmark, Anna; Lönnberg, Maria; Mikus, Maria et al.

Part of PLOS ONE, 2016

• DOI for Analysis of the Cerebrospinal Fluid Proteome in Alzheimer's Disease
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CSF profiling of the human brain enriched proteome reveals associations of neuromodulin and neurogranin to Alzheimer's disease

Remnestål, Julia; Just, David; Mitsios, Nicholas; Fredolini, Claudia et al.

Part of PROTEOMICS - Clinical Applications, p. 1242-1253, 2016

• DOI for CSF profiling of the human brain enriched proteome reveals associations of neuromodulin and neurogranin to Alzheimer's disease
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Exploring the role of neuropeptide S in the regulation of arousal: a functional anatomical study.

Adori, Csaba; Barde, Swapnali; Vas, Szilvia; Ebner, Karl et al.

Part of Brain Structure and Function, p. 3521-3546, 2016

• DOI for Exploring the role of neuropeptide S in the regulation of arousal: a functional anatomical study.

Increased levels of extracellular microvesicle markers and decreased levels of endocytic/exocytic proteins in the Alzheimer’s disease brain

Sravani, Musunuri; Emami Khoonsari, Payam; Mikus, Maria; Wetterhall, Magnus et al.

Part of Journal of Alzheimer's Disease, p. 1671-1686, 2016

• DOI for Increased levels of extracellular microvesicle markers and decreased levels of endocytic/exocytic proteins in the Alzheimer’s disease brain

Large-Scale Gene Expression Profiling Platform for Identification of Context-Dependent Drug Responses in Multicellular Tumor Spheroids

Senkowski, Wojciech; Jarvius, Malin; Rubin, Jenny; Lengqvist, Johan et al.

Part of CELL CHEMICAL BIOLOGY, p. 1428-1438, 2016

• DOI for Large-Scale Gene Expression Profiling Platform for Identification of Context-Dependent Drug Responses in Multicellular Tumor Spheroids

Micellar extraction possesses a new advantage for the analysis of Alzheimer's disease brain proteome

Musunuri, Sravani; Kultima, Kim; Richard, Bernhard Clemens; Ingelsson, Martin et al.

Part of Analytical and Bioanalytical Chemistry, p. 1041-1057, 2015

• DOI for Micellar extraction possesses a new advantage for the analysis of Alzheimer's disease brain proteome

Quantification of the Brain Proteome in Alzheimer's Disease Using Multiplexed Mass Spectrometry

Musunuri, Sravani; Wetterhall, Magnus; Ingelsson, Martin; Lannfelt, Lars et al.

Part of Journal of Proteome Research, p. 2056-2068, 2014

• DOI for Quantification of the Brain Proteome in Alzheimer's Disease Using Multiplexed Mass Spectrometry

Identification and quantification of neuropeptides in naive mouse spinal cord using mass spectrometry reveals [des-Ser1]-cerebellin as a novel modulator of nociception

Su, Jie; Sandor, Katalin; Sköld, Karl; Hokfelt, Tomas et al.

Part of Journal of Neurochemistry, p. 199-214, 2014

• DOI for Identification and quantification of neuropeptides in naive mouse spinal cord using mass spectrometry reveals [des-Ser1]-cerebellin as a novel modulator of nociception

Neurotoxin-Induced Neuropeptide Perturbations in Striatum of Neonatal Rats

Karlsson, Oskar; Kultima, Kim; Wadensten, Henrik; Nilsson, Anna et al.

Part of Journal of Proteome Research, p. 1678-1690, 2013

• DOI for Neurotoxin-Induced Neuropeptide Perturbations in Striatum of Neonatal Rats

Comparative study of label and label-free techniques using shotgun proteomics for relative protein quantification

Sjödin, Marcus O.D.; Wetterhall, Magnus; Kultima, Kim; Artemenko, Konstantin

Part of Journal of chromatography. B, p. 83-92, 2013

• DOI for Comparative study of label and label-free techniques using shotgun proteomics for relative protein quantification

Longitudinal characterization of the brain proteomes for the tg2576 amyloid mouse model using shotgun based mass spectrometry

Shevchenko, Ganna; Wetterhall, Magnus; Bergquist, Jonas; Höglund, Kina et al.

Part of Journal of Proteome Research, p. 6159-74, 2012

• DOI for Longitudinal characterization of the brain proteomes for the tg2576 amyloid mouse model using shotgun based mass spectrometry

Impact of Temperature Dependent Sampling Procedures in Proteomics and Peptidomics: A Characterization of the Liver and Pancreas Post Mortem Degradome

Scholz, Birger; Sköld, Karl; Kultima, Kim; Fernandez, Celine et al.

Part of Molecular & Cellular Proteomics, 2011

• DOI for Impact of Temperature Dependent Sampling Procedures in Proteomics and Peptidomics: A Characterization of the Liver and Pancreas Post Mortem Degradome

Improved methodology for identifying the teratogenic potential in early drug development of hERG channel blocking drugs

Nilsson, Mats F.; Danielsson, C.; Sköld, A.-C.; Johansson, A. et al.

Part of Reproductive Toxicology, p. 156-163, 2010

• DOI for Improved methodology for identifying the teratogenic potential in early drug development of hERG channel blocking drugs

Neuropeptidomic analysis of the embryonic Japanese quail diencephalon

Scholz, Birger; Alm, Henrik; Mattsson, Anna; Nilsson, Anna et al.

Part of BMC Developmental Biology, p. 30, 2010

• DOI for Neuropeptidomic analysis of the embryonic Japanese quail diencephalon

Early transcriptional responses in mouse embryos as a basis for selection of molecular markers predictive of valproic acid teratogenicity

Kultima, Kim; Jergil, Måns; Salter, Hugh; Gustafson, Anne-Lee et al.

Part of Reproductive Toxicology, p. 457-468, 2010

• DOI for Early transcriptional responses in mouse embryos as a basis for selection of molecular markers predictive of valproic acid teratogenicity

In Vitro Neurotoxicity of PBDE-99: Immediate and Concentration-Dependent Effects on Protein Expression in Cerebral Cortex Cells

Alm, Henrik; Scholz, Birger; Kultima, Kim; Nilsson, Anna et al.

Part of Journal of Proteome Research, p. 1226-1235, 2010

• DOI for In Vitro Neurotoxicity of PBDE-99: Immediate and Concentration-Dependent Effects on Protein Expression in Cerebral Cortex Cells

Valproic acid-induced deregulation in vitro of genes associated in vivo with neural tube defects

Jergil, Måns; Kultima, Kim; Gustafson, Anne-Lee; Dencker, Lennart et al.

Part of Toxicological Sciences, p. 132-148, 2009

• DOI for Valproic acid-induced deregulation in vitro of genes associated in vivo with neural tube defects

Development and evaluation of normalization methods for label-free relative quantification of endogenous peptides

Kultima, Kim; Nilsson, Anna; Scholz, Birger; Rossbach, Uwe L. et al.

Part of Molecular & Cellular Proteomics, p. 2285-2295, 2009

• DOI for Development and evaluation of normalization methods for label-free relative quantification of endogenous peptides

Striatal alterations of secretogranin-1, somatostatin, prodynorphin and cholecystokinin peptides in an experimental mouse model of Parkinson’s disease

Nilsson, Anna; Fälth, Maria; Zhang, Xiaoqun; Kultima, Kim et al.

Part of Molecular & Cellular Proteomics, p. 1094-1104, 2009

• DOI for Striatal alterations of secretogranin-1, somatostatin, prodynorphin and cholecystokinin peptides in an experimental mouse model of Parkinson’s disease

A quantitative peptidomic analysis of peptides related to the endogenous opioid and tachykinin systems in nucleus accumbens of rats following naloxone-precipitated morphine withdrawal

Rossbach, Uwe; Nilsson, Anna; Fälth, Maria; Kultima, Kim et al.

Part of Journal of Proteome Research, p. 1091-1098, 2009

• DOI for A quantitative peptidomic analysis of peptides related to the endogenous opioid and tachykinin systems in nucleus accumbens of rats following naloxone-precipitated morphine withdrawal

Striatal proteomic analysis suggests that first L-dopa dose equates to chronic exposure

Scholz, Birger; Svensson, Marcus; Alm, Henrik; Sköld, Karl et al.

Part of PLoS ONE, 2008

• DOI for Striatal proteomic analysis suggests that first L-dopa dose equates to chronic exposure

Faced with inequality: chicken do not have a general dosage compensation of sex-linked genes

Ellegren, Hans; Hultin-Rosenberg, Lina; Brunström, Björn; Dencker, Lennart et al.

Part of BMC Biology, p. 40, 2007

• DOI for Faced with inequality: chicken do not have a general dosage compensation of sex-linked genes

Sex-dependent gene expression in early brain development of chicken embryos

Scholz, Birger; Kultima, Kim; Mattsson, Anna; Axelsson, Jeanette et al.

Part of BMC Neuroscience, p. 12, 2006

• DOI for Sex-dependent gene expression in early brain development of chicken embryos

Normalization and expression changes in predefined sets of proteins using 2D gel electrophoresis: A proteomic study of L-DOPA induced dyskinesia in an animal model of Parkinson's disease using DIGE

Kultima, Kim; Scholz, Birger; Alm, Henrik; Sköld, Karl et al.

Part of BMC Bioinformatics, p. 475, 2006

• DOI for Normalization and expression changes in predefined sets of proteins using 2D gel electrophoresis: A proteomic study of L-DOPA induced dyskinesia in an animal model of Parkinson's disease using DIGE

Cadmium-induced gene expression changes in the mouse embryo, and the influence of pretreatment with zinc

Kultima, Kim; Fernández, Estíbaliz L.; Scholz, Birger; Gustafson, Anne-Lee et al.

Part of Reproductive Toxicology, p. 636-646, 2006

• DOI for Cadmium-induced gene expression changes in the mouse embryo, and the influence of pretreatment with zinc

Valproic acid teratogenicity: a toxicogenomics approach

Kultima, Kim; Nyström, Anna-Maja; Scholz, Birger; Gustafson, Anne-Lee et al.

Part of Journal of Environmental Health Perspectives, p. 1225-1235, 2004

• DOI for Valproic acid teratogenicity: a toxicogenomics approach

Biomarkers of disease and post-mortem changes: Heat stabilization, a necessary tool for measurement of protein regulation

Kultima, Kim; Sköld, Karl; Borén, Mats

Part of Journal of Proteomics, p. 145-159, 2011

• DOI for Biomarkers of disease and post-mortem changes: Heat stabilization, a necessary tool for measurement of protein regulation

Transcriptomics and Proteomics Applied to Developmental Toxicology

Kultima, Kim

2007

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A biochemical signature of progressive multiple sclerosis

Herman, Stephanie; Emami Khoonsari, Payam; Bergman, Joakim; Svenningsson, Anders et al.