Cecilia Lindskog

Stem cell-associated transcription factors in non-functioning pituitary neuroendocrine tumours

Øystese, Kristin Astrid; Olarescu, Nicoleta Cristina; Lindskog, Cecilia; Xheka, Fabjola et al.

Part of Free neuropathology, p. 1-14, 2024

• DOI for Stem cell-associated transcription factors in non-functioning pituitary neuroendocrine tumours
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The 2024 Report on the Human Proteome from the HUPO Human Proteome Project

Omenn, Gilbert S.; Orchard, Sandra; Lane, Lydie; Lindskog, Cecilia et al.

Part of Journal of Proteome Research, p. 5296-5311, 2024

• DOI for The 2024 Report on the Human Proteome from the HUPO Human Proteome Project

Transcriptomics and Spatial Proteomics for Discovery and Validation of Missing Proteins in the Human Ovary

Méar, Loren; Hao, Xia; Hikmet Noraddin, Feria; Damdimopoulou, Pauliina et al.

Part of Journal of Proteome Research, p. 238-248, 2024

• DOI for Transcriptomics and Spatial Proteomics for Discovery and Validation of Missing Proteins in the Human Ovary
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The 2023 Report on the Proteome from the HUPO Human Proteome Project

Omenn, Gilbert S.; Lane, Lydie; Overall, Christopher M.; Lindskog, Cecilia et al.

Part of Journal of Proteome Research, p. 532-549, 2024

• DOI for The 2023 Report on the Proteome from the HUPO Human Proteome Project

Effects of chemical in vitro activation versus fragmentation on human ovarian tissue and follicle growth in culture

Hao, Jie; Li, Tianyi; Heinzelmann, Manuel; Moussaud-Lamodiere, Elisabeth et al.

Part of Human Reproduction Open, 2024

• DOI for Effects of chemical in vitro activation versus fragmentation on human ovarian tissue and follicle growth in culture
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Stem cell-associated transcription factors in non-functioning pituitary neuroendocrine tumours

Øystese, Kristin Astrid; Olarescu, Nicoleta Cristina; Lindskog, Cecilia; Xheka, Fabjola et al.

Part of Free neuropathology, p. 1-14, 2024

• DOI for Stem cell-associated transcription factors in non-functioning pituitary neuroendocrine tumours
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Transcriptomics and Spatial Proteomics for Discovery and Validation of Missing Proteins in the Human Ovary

Méar, Loren; Hao, Xia; Hikmet Noraddin, Feria; Damdimopoulou, Pauliina et al.

Part of Journal of Proteome Research, p. 238-248, 2024

• DOI for Transcriptomics and Spatial Proteomics for Discovery and Validation of Missing Proteins in the Human Ovary
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Effects of chemical in vitro activation versus fragmentation on human ovarian tissue and follicle growth in culture

Hao, Jie; Li, Tianyi; Heinzelmann, Manuel; Moussaud-Lamodiere, Elisabeth et al.

Part of Human Reproduction Open, 2024

• DOI for Effects of chemical in vitro activation versus fragmentation on human ovarian tissue and follicle growth in culture
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Persistent organic pollutants dysregulate energy homeostasis in human ovaries in vitro

Li, Tianyi; Duque Björvang, Richelle; Hao, Jie; Di Nisio, Valentina et al.

Part of Environment International, 2024

• DOI for Persistent organic pollutants dysregulate energy homeostasis in human ovaries in vitro
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In-depth analysis of transcriptomes in ovarian cortical follicles from children and adults reveals interfollicular heterogeneity

Rooda, Ilmatar; Hassan, Jasmin; Hao, Jie; Wagner, Magdalena et al.

Part of Nature Communications, 2024

• DOI for In-depth analysis of transcriptomes in ovarian cortical follicles from children and adults reveals interfollicular heterogeneity
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In situ detection of PD1–PD-L1 interactions as a functional predictor for response to immune checkpoint inhibition in NSCLC

Lindberg, Amanda; Muhl, Lars; Yu, Hui; Hellberg, Louise et al.

Part of Journal of Thoracic Oncology, 2024

• DOI for In situ detection of PD1–PD-L1 interactions as a functional predictor for response to immune checkpoint inhibition in NSCLC

Exposure to the phthalate metabolite MEHP impacts survival and growth of human ovarian follicles in vitro.

Panagiotou, Eleftheria Maria; Damdimopoulos, Anastasios; Li, Tianyi; Moussaud-Lamodière, Elisabeth et al.

Part of Toxicology, p. 153815, 2024

• DOI for Exposure to the phthalate metabolite MEHP impacts survival and growth of human ovarian follicles in vitro.

Transcriptome Analysis Reveals Distinct Patterns Between the Invasive and Noninvasive Pituitary Neuroendocrine Tumors

Jotanovic, Jelena; Tebani, Abdellah; Hekmati, Neda; Sivertsson, Åsa et al.

Part of Journal of the Endocrine Society, 2024

• DOI for Transcriptome Analysis Reveals Distinct Patterns Between the Invasive and Noninvasive Pituitary Neuroendocrine Tumors
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Deubiquitinase USP9x regulates the proline biosynthesis pathway in non-small cell lung cancer

Becirovic, Tina; Zhang, Boxi; Lindskog, Cecilia; Norberg, Erik et al.

Part of Cell Death Discovery, 2024

• DOI for Deubiquitinase USP9x regulates the proline biosynthesis pathway in non-small cell lung cancer
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The Human Phospholipase B-II Precursor (HPLBII-P) in Urine as a Novel Biomarker of Glomerular Activity in COVID-19 and Diabetes Mellitus

Xu, Shengyuan; Hultström, Michael; Larsson, Anders; Lipcsey, Miklós et al.

Part of Journal of Clinical Medicine, 2024

• DOI for The Human Phospholipase B-II Precursor (HPLBII-P) in Urine as a Novel Biomarker of Glomerular Activity in COVID-19 and Diabetes Mellitus
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The Human Phospholipase B-II Precursor (HPLBII-P) in Urine as a Novel Biomarker of Increased Glomerular Production or Permeability in Diabetes Mellitus?

Xu, Shengyuan; Larsson, Anders; Lind, Lars; Lindskog, Cecilia et al.

Part of Journal of Clinical Medicine, 2024

• DOI for The Human Phospholipase B-II Precursor (HPLBII-P) in Urine as a Novel Biomarker of Increased Glomerular Production or Permeability in Diabetes Mellitus?
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CD93 maintains endothelial barrier function and limits metastatic dissemination

Vemuri, Kalyani; de Alves Pereira, Beatriz; Fuenzalida, Patricia; Subashi, Yelin et al.

Part of JCI Insight, 2024

• DOI for CD93 maintains endothelial barrier function and limits metastatic dissemination
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A human stomach cell type transcriptome atlas

Öling, S.; Struck, E.; Noreen-Thorsen, M.; Zwahlen, M. et al.

Part of BMC Biology, 2024

• DOI for A human stomach cell type transcriptome atlas
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The human protein atlas-Integrated omics for single cell mapping of the human proteome

Digre, Andreas; Lindskog, Cecilia

Part of Protein Science, 2023

• DOI for The human protein atlas-Integrated omics for single cell mapping of the human proteome
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Segmenting functional tissue units across human organs using community-driven development of generalizable machine learning algorithms

Jain, Yashvardhan; Godwin, Leah L.; Joshi, Sripad; Mandarapu, Shriya et al.

Part of Nature Communications, 2023

• DOI for Segmenting functional tissue units across human organs using community-driven development of generalizable machine learning algorithms
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The 2022 Report on the Human Proteome from the HUPO Human Proteome Project

Omenn, Gilbert S.; Lane, Lydie; Overall, Christopher M.; Pineau, Charles et al.

Part of Journal of Proteome Research, p. 1024-1042, 2023

• DOI for The 2022 Report on the Human Proteome from the HUPO Human Proteome Project

Meningioma classification by immunohistochemistry: A replicability study

Naslunda, Olivia; Lipatnikova, Anna; Denes, Anna; Lindskog, Cecilia et al.

Part of BRAIN AND SPINE, 2023

• DOI for Meningioma classification by immunohistochemistry: A replicability study
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Expression of cancer-testis antigens in the immune microenvironment of non-small cell lung cancer

Hikmet Noraddin, Feria; Rassy, Marc; Backman, Max; Méar, Loren et al.

Part of Molecular Oncology, p. 2603-2617, 2023

• DOI for Expression of cancer-testis antigens in the immune microenvironment of non-small cell lung cancer
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Proteogenomic analysis of acute myeloid leukemia associates relapsed disease with reprogrammed energy metabolism both in adults and children

Stratmann, Svea; Vesterlund, Mattias; Umer, Husen M.; Skaftason, Aron et al.

Part of Leukemia, p. 550-559, 2023

• DOI for Proteogenomic analysis of acute myeloid leukemia associates relapsed disease with reprogrammed energy metabolism both in adults and children
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A Comparison of Host Responses to Infection with Wild-Type Avian Influenza Viruses in Chickens and Tufted Ducks

Naguib, Mahmoud; Eriksson, Per; Jax, Elinor; Wille, Michelle et al.

Part of Microbiology Spectrum, 2023

• DOI for A Comparison of Host Responses to Infection with Wild-Type Avian Influenza Viruses in Chickens and Tufted Ducks
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Determinants of iFGF13-mediated regulation of myocardial voltage-gated sodium (Na_V) channels in mouse

Lesage, Adrien; Lorenzini, Maxime; Burel, Sophie; Sarlandie, Marine et al.

Part of The Journal of General Physiology, 2023

• DOI for Determinants of iFGF13-mediated regulation of myocardial voltage-gated sodium (Na_V) channels in mouse

Inhibiting the glycerophosphodiesterase EDI3 in ER-HER2+breast cancer cells resistant to HER2-targeted therapy reduces viability and tumour growth

Keller, Magdalena; Rohlf, Katharina; Glotzbach, Annika; Leonhardt, Gregor et al.

Part of Journal of Experimental & Clinical Cancer Research, 2023

• DOI for Inhibiting the glycerophosphodiesterase EDI3 in ER-HER2+breast cancer cells resistant to HER2-targeted therapy reduces viability and tumour growth
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The clinical value of proneural, classical and mesenchymal protein signatures in WHO 2021 adult-type diffuse lower-grade gliomas

Denes, Anna; Bontell, Thomas Olsson; Barcheus, Hanna; Vega, Sandra Ferreyra et al.

Part of PLOS ONE, 2023

• DOI for The clinical value of proneural, classical and mesenchymal protein signatures in WHO 2021 adult-type diffuse lower-grade gliomas
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Spatial Proteomics for Further Exploration of Missing Proteins: A Case Study of the Ovary

Méar, Loren; Sutantiwanichkul, Thanadol; Östman, Josephine; Damdimopoulou, Pauliina et al.

Part of Journal of Proteome Research, p. 1071-1079, 2023

• DOI for Spatial Proteomics for Further Exploration of Missing Proteins: A Case Study of the Ovary
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Sex- and Female Age-Dependent Differences in Gene Expression in Diffuse Large B-Cell Lymphoma-Possible Estrogen Effects

Huang, Dan; Berglund, Mattias; Damdimopoulos, Anastasios; Antonson, Per et al.

Part of Cancers, 2023

• DOI for Sex- and Female Age-Dependent Differences in Gene Expression in Diffuse Large B-Cell Lymphoma-Possible Estrogen Effects
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Expression of IDO1 and PD-L2 in Patients with Benign Lymphadenopathies and Association with Autoimmune Diseases

Abdulla, Maysaa; Sundström, Christer; Lindskog, Cecilia; Hollander, Peter

Part of Biomolecules, 2023

• DOI for Expression of IDO1 and PD-L2 in Patients with Benign Lymphadenopathies and Association with Autoimmune Diseases
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Protein Expression Profile of ACE2 in the Normal and COVID-19-Affected Human Brain.

Lindskog, Cecilia; Méar, Loren; Virhammar, Johan; Fällmar, David et al.

Part of Journal of Proteome Research, p. 2137-2145, 2022

• DOI for Protein Expression Profile of ACE2 in the Normal and COVID-19-Affected Human Brain.
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AGPAT1 as a Novel Colonic Biomarker for Discriminating Between Ulcerative Colitis With and Without Primary Sclerosing Cholangitis

Vessby, Johan; Wisniewski, Jacek R.; Lindskog, Cecilia; Eriksson, Niclas et al.

Part of Clinical and Translational Gastroenterology, 2022

• DOI for AGPAT1 as a Novel Colonic Biomarker for Discriminating Between Ulcerative Colitis With and Without Primary Sclerosing Cholangitis

Genomic Multiple Sclerosis Risk Variants Modulate the Expression of the ANKRD55-IL6ST Gene Region in Immature Dendritic Cells

Mena, Jorge; Alloza, Iraide; Tulloch Navarro, Raquel; Aldekoa, Ane et al.

Part of Frontiers in Immunology, 2022

• DOI for Genomic Multiple Sclerosis Risk Variants Modulate the Expression of the ANKRD55-IL6ST Gene Region in Immature Dendritic Cells
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Genome-wide annotation of protein-coding genes in pig

Karlsson, Max; Sjöstedt, Evelina; Oksvold, Per; Sivertsson, Asa et al.

Part of BMC Biology, 2022

• DOI for Genome-wide annotation of protein-coding genes in pig
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Outcome in PCNSL patients and its association with PD-L1+leukocytes in the tumor microenvironment

Abdulla, Maysaa; Hollander, Peter; Lindskog, Cecilia; Sundström, Christer et al.

Part of Acta Oncologica, p. 824-829, 2022

• DOI for Outcome in PCNSL patients and its association with PD-L1+leukocytes in the tumor microenvironment

A human adipose tissue cell-type transcriptome atlas

Norreen-Thorsen, Marthe; Struck, Eike Christopher; Oling, Sofia; Zwahlen, Martin et al.

Part of Cell Reports, 2022

• DOI for A human adipose tissue cell-type transcriptome atlas
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Endothelial cell heterogeneity and microglia regulons revealed by a pig cell landscape at single-cell level

Wang, Fei; Ding, Peiwen; Liang, Xue; Ding, Xiangning et al.

Part of Nature Communications, 2022

• DOI for Endothelial cell heterogeneity and microglia regulons revealed by a pig cell landscape at single-cell level
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Estimating diagnostic uncertainty in artificial intelligence assisted pathology using conformal prediction

Olsson, Henrik; Kartasalo, Kimmo; Mulliqi, Nita; Capuccini, Marco et al.

Part of Nature Communications, 2022

• DOI for Estimating diagnostic uncertainty in artificial intelligence assisted pathology using conformal prediction
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Stemness and clinical features in relation to the subventricular zone in diffuse lower-grade glioma: an exploratory study

Corell, Alba; Vecchio, Tomas Gomez; Vega, Sandra Ferreyra; Denes, Anna et al.

Part of Neuro-Oncology Advances, 2022

• DOI for Stemness and clinical features in relation to the subventricular zone in diffuse lower-grade glioma: an exploratory study
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TGFBR3L-An Uncharacterised Pituitary Specific Membrane Protein Detected in the Gonadotroph Cells in Non-Neoplastic and Tumour Tissue

Sjöstedt, Evelina; Kolnes, Anders J; Olarescu, Nicoleta C; Mitsios, Nicholas et al.

Part of Cancers, 2021

• DOI for TGFBR3L-An Uncharacterised Pituitary Specific Membrane Protein Detected in the Gonadotroph Cells in Non-Neoplastic and Tumour Tissue
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Progress Identifying and Analyzing the Human Proteome: 2021 Metrics from the HUPO Human Proteome Project

Omenn, Gilbert S.; Lane, Lydie; Overall, Christopher M.; Paik, Young-Ki et al.

Part of Journal of Proteome Research, p. 5227-5240, 2021

• DOI for Progress Identifying and Analyzing the Human Proteome: 2021 Metrics from the HUPO Human Proteome Project

Mapping the temporal and spatial dynamics of the human endometrium in vivo and in vitro

Garcia-Alonso, Luz; Handfield, Louis-Francois; Roberts, Kenny; Nikolakopoulou, Konstantina et al.

Part of Nature Genetics, p. 1698, 2021

• DOI for Mapping the temporal and spatial dynamics of the human endometrium in vivo and in vitro
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A Diffusion-like Process Accommodates New Crypts During Clonal Expansion in Human Colonic Epithelium

Olpe, Cora; Khamis, Doran; Chukanova, Maria; Skoufou-Papoutsaki, Nefeli et al.

Part of Gastroenterology, p. 548-559, 2021

• DOI for A Diffusion-like Process Accommodates New Crypts During Clonal Expansion in Human Colonic Epithelium
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DeepHistoClass: A Novel Strategy for Confident Classification of Immunohistochemistry Images Using Deep Learning

Ghoshal, Biraja; Hikmet, Feria; Pineau, Charles; Tucker, Allan et al.

Part of Molecular & Cellular Proteomics, 2021

• DOI for DeepHistoClass: A Novel Strategy for Confident Classification of Immunohistochemistry Images Using Deep Learning
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Mechanistic insights into COVID-19 by global analysis of the SARS-CoV-2 3CL(pro) substrate degradome

Pablos, Isabel; Machado, Yoan; de Jesus, Hugo C. Ramos; Mohamud, Yasir et al.

Part of Cell Reports, 2021

• DOI for Mechanistic insights into COVID-19 by global analysis of the SARS-CoV-2 3CL(pro) substrate degradome
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PD-L1 and IDO1 are potential targets for treatment in patients with primary diffuse large B-cell lymphoma of the CNS

Abdulla, Maysaa; Alexsson, Andrei; Sundström, Christer; Ladenvall, Claes et al.

Part of Acta Oncologica, p. 531-538, 2021

• DOI for PD-L1 and IDO1 are potential targets for treatment in patients with primary diffuse large B-cell lymphoma of the CNS
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Interobserver reproducibility of perineural invasion of prostatic adenocarcinoma in needle biopsies

Egevad, Lars; Delahunt, Brett; Samaratunga, Hemamali; Tsuzuki, Toyonori et al.

Part of Virchows Archiv, p. 1109-1116, 2021

• DOI for Interobserver reproducibility of perineural invasion of prostatic adenocarcinoma in needle biopsies
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A single-cell type transcriptomics map of human tissues

Karlsson, Max; Zhang, Cheng; Méar, Loren; Zhong, Wen et al.

Part of Science Advances, 2021

• DOI for A single-cell type transcriptomics map of human tissues
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The prognostic impact of the tumour stroma fraction: A machine learning-based analysis in 16 human solid tumour types

Micke, Patrick; Strell, Carina; Mattsson, Johanna Sofia Margareta; Martin-Bernabe, Alfonso et al.

Part of EBioMedicine, 2021

• DOI for The prognostic impact of the tumour stroma fraction: A machine learning-based analysis in 16 human solid tumour types
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Infiltration of NK and plasma cells is associated with a distinct immune subset in non‐small cell lung cancer

Backman, Max; La Fleur, Linnea; Kurppa, Pinja; Djureinovic, Dijana et al.

Part of Journal of Pathology, p. 243-256, 2021

• DOI for Infiltration of NK and plasma cells is associated with a distinct immune subset in non‐small cell lung cancer
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Combined RNA/tissue profiling identifies novel Cancer/testis genes

Jamin, Soazik P.; Hikmet, Feria; Mathieu, Romain; Jégou, Bernard et al.

Part of Molecular Oncology, p. 3003-3023, 2021

• DOI for Combined RNA/tissue profiling identifies novel Cancer/testis genes
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Spatiotemporal dissection of the cell cycle with single-cell proteogenomics

Mahdessian, Diana; Cesnik, Anthony J.; Gnann, Christian; Danielsson, Frida et al.

Part of Nature, p. 649-654, 2021

• DOI for Spatiotemporal dissection of the cell cycle with single-cell proteogenomics

The Human Protein Atlas - Spatial localization of the human proteome in health and disease

Digre, Andreas; Lindskog, Cecilia

Part of Protein Science, p. 218-233, 2021

• DOI for The Human Protein Atlas - Spatial localization of the human proteome in health and disease

Enhanced Validation of Antibodies Enables the Discovery of Missing Proteins

Sivertsson, Åsa; Lindström, Emil; Oksvold, Per; Katona, Borbala et al.

Part of Journal of Proteome Research, p. 4766-4781, 2020

• DOI for Enhanced Validation of Antibodies Enables the Discovery of Missing Proteins
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Research on the Human Proteome Reaches a Major Milestone: > 90% of Predicted Human Proteins Now Credibly Detected, According to the HUPO Human Proteome Project

Omenn, Gilbert S.; Lane, Lydie; Overall, Christopher M.; Cristea, Ileana M. et al.

Part of Journal of Proteome Research, p. 4735-4746, 2020

• DOI for Research on the Human Proteome Reaches a Major Milestone: > 90% of Predicted Human Proteins Now Credibly Detected, According to the HUPO Human Proteome Project

A high-stringency blueprint of the human proteome

Adhikari, Subash; Nice, Edouard C.; Deutsch, Eric W.; Lane, Lydie et al.

Part of Nature Communications, 2020

• DOI for A high-stringency blueprint of the human proteome
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The protein expression profile of ACE2 in human tissues

Noraddin, Feria Hikmet; Méar, Loren; Edvinsson, Åsa; Micke, Patrick et al.

Part of Molecular Systems Biology, 2020

• DOI for The protein expression profile of ACE2 in human tissues

Artificial intelligence for diagnosis and grading of prostate cancer in biopsies: a population-based, diagnostic study

Strom, Peter; Kartasalo, Kimmo; Olsson, Henrik; Solorzano, Leslie et al.

Part of The Lancet Oncology, p. 222-232, 2020

• DOI for Artificial intelligence for diagnosis and grading of prostate cancer in biopsies: a population-based, diagnostic study

Marginal zone lymphoma expression of histidine-rich glycoprotein correlates with improved survival

Persson Skare, Tor; Sjöberg, Elin; Berglund, Mattias; Smith, Ross O. et al.

Part of eJHaem, p. 199-207, 2020

• DOI for Marginal zone lymphoma expression of histidine-rich glycoprotein correlates with improved survival
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An atlas of the protein-coding genes in the human, pig, and mouse brain

Sjostedt, Evelina; Zhong, Wen; Fagerberg, Linn; Karlsson, Max et al.

Part of Science, p. 1090-+, 2020

• DOI for An atlas of the protein-coding genes in the human, pig, and mouse brain

Tumor endothelial ELTD1 as a predictive marker for treatment of renal cancer patients with sunitinib

Niinivirta, Marjut; Georganaki, Maria; Enblad, Gunilla; Lindskog, Cecilia et al.

Part of BMC Cancer, 2020

• DOI for Tumor endothelial ELTD1 as a predictive marker for treatment of renal cancer patients with sunitinib
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Candidate protein biomarkers in pancreatic neuroendocrine neoplasms grade 3

Ali, Abir Salwa; Perren, Aurel; Lindskog, Cecilia; Welin, Staffan et al.

Part of Scientific Reports, 2020

• DOI for Candidate protein biomarkers in pancreatic neuroendocrine neoplasms grade 3
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Proximity Ligation Assay as a Tool for Antibody Validation in Human Tissues

Lindskog, Cecilia; Backman, Max; Zieba, Agata; Asplund, Anna et al.

Part of Journal of Histochemistry and Cytochemistry, p. 515-529, 2020

• DOI for Proximity Ligation Assay as a Tool for Antibody Validation in Human Tissues

Systematic analysis reveals a functional role for STAMBPL1 in the epithelial-mesenchymal transition process across multiple carcinomas

Ambroise, Gorbatchev; Yu, Ting-ting; Zhang, Boxi; Kacal, Merve et al.

Part of British Journal of Cancer, p. 1164-1177, 2020

• DOI for Systematic analysis reveals a functional role for STAMBPL1 in the epithelial-mesenchymal transition process across multiple carcinomas

Somatostatin receptor expression and mTOR pathway activation in glioneuronal tumours of childhood

Ehrstedt, Christoffer; Ahlsten, Gunnar; Strömberg, Bo; Lindskog, Cecilia et al.

Part of Seizure, p. 123-130, 2020

• DOI for Somatostatin receptor expression and mTOR pathway activation in glioneuronal tumours of childhood

ASCL1 promotes tumor progression through cell-autonomous signaling and immune modulation in a subset of lung adenocarcinoma

Miyashita, Naoya; Horie, Masafumi; Mikami, Yu; Urushiyama, Hirokazu et al.

Part of Cancer Letters, p. 121-132, 2020

• DOI for ASCL1 promotes tumor progression through cell-autonomous signaling and immune modulation in a subset of lung adenocarcinoma

Perivascular Neuropilin-1 expression is an independent marker of improved survival in renal cell carcinoma

Morin, Eric; Lindskog, Cecilia; Johansson, Martin; Egevad, Lars et al.

Part of Journal of Pathology, p. 387-396, 2020

• DOI for Perivascular Neuropilin-1 expression is an independent marker of improved survival in renal cell carcinoma
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The Dynamic Transcriptional Cell Atlas of Testis Development during Human Puberty

Guo, Jingtao; Nie, Xichen; Giebler, Maria; Mlcochova, Hana et al.

Part of Cell Stem Cell, p. 262-+, 2020

• DOI for The Dynamic Transcriptional Cell Atlas of Testis Development during Human Puberty
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Cell Type-Specific Expression of Testis Elevated Genes Based on Transcriptomics and Antibody-Based Proteomics

Pineau, Charles; Hikmet, Feria; Zhang, Cheng; Oksvold, Per et al.

Part of Journal of Proteome Research, p. 4215-4230, 2019

• DOI for Cell Type-Specific Expression of Testis Elevated Genes Based on Transcriptomics and Antibody-Based Proteomics

The human secretome

Uhlen, Mathias; Karlsson, Max J.; Hober, Andreas; Svensson, Anne-Sophie et al.

Part of Science Signaling, 2019

• DOI for The human secretome

Attachment Patterns of Human and Avian Influenza Viruses to Trachea and Colon of 26 Bird Species: Support for the Community Concept

Eriksson, Per; Lindskog, Cecilia; Lorente-Leal, Victor; Waldenström, Jonas et al.

Part of Frontiers in Microbiology, 2019

• DOI for Attachment Patterns of Human and Avian Influenza Viruses to Trachea and Colon of 26 Bird Species: Support for the Community Concept
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Tumoral pyruvate kinase L/R as a predictive marker for the treatment of renal cancer patients with sunitinib and sorafenib

Niinivirta, Marjut; Enblad, Gunilla; Lindskog, Cecilia; Pontén, Fredrik et al.

Part of Journal of Cancer, p. 3224-3231, 2019

• DOI for Tumoral pyruvate kinase L/R as a predictive marker for the treatment of renal cancer patients with sunitinib and sorafenib
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Programmed Cell Death Ligand 1 Immunohistochemistry: A Concordance Study Between Surgical Specimen, Biopsy, and Tissue Microarray

Elfving, Hedvig; Mattsson, Johanna Sofia Margareta; Lindskog, Cecilia; Backman, Max et al.

Part of Clinical Lung Cancer, p. 258-2620, 2019

• DOI for Programmed Cell Death Ligand 1 Immunohistochemistry: A Concordance Study Between Surgical Specimen, Biopsy, and Tissue Microarray

A genome-wide transcriptomic analysis of protein-coding genes in human blood cells

Uhlen, Mathias; Karlsson, Max J.; Zhong, Wen; Tebani, Abdellah et al.

Part of Science, p. 1471-+, 2019

• DOI for A genome-wide transcriptomic analysis of protein-coding genes in human blood cells

PPP2R2A prostate cancer haploinsufficiency is associated with worse prognosis and a high vulnerability to B55 alpha/PP2A reconstitution that triggers centrosome destabilization

Zhao, Ziran; Kurimchak, Alison; Nikonova, Anna S.; Feiser, Felicity et al.

Part of Oncogenesis, 2019

• DOI for PPP2R2A prostate cancer haploinsufficiency is associated with worse prognosis and a high vulnerability to B55 alpha/PP2A reconstitution that triggers centrosome destabilization
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Prognostic Impact of Tumor Cell Programmed Death Ligand 1 Expression and Immune Cell Infiltration in NSCLC

Edlund, Karolina; Madjar, Katrin; Mattsson, Johanna Sofia Margareta; Djureinovic, Dijana et al.

Part of Journal of Thoracic Oncology, p. 628-640, 2019

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A High-throughput Bead-based Affinity Assay Enables Analysis of Genital Protein Signatures in Women At Risk of HIV Infection

Månberg, Anna; Bradley, Frideborg; Qundos, Ulrika; Guthrie, Brandon L. et al.

Part of Molecular & Cellular Proteomics, p. 461-476, 2019

• DOI for A High-throughput Bead-based Affinity Assay Enables Analysis of Genital Protein Signatures in Women At Risk of HIV Infection

The human protein atlas: A spatial map of the human proteome

Thul, Peter J.; Lindskog, Cecilia

Part of Protein Science, p. 233-244, 2018

• DOI for The human protein atlas: A spatial map of the human proteome

Integration of Transcriptomics and Antibody-Based Proteomics for Exploration of Proteins Expressed in Specialized Tissues

Sjöstedt, Evelina; Sivertsson, Åsa; Noraddin, Feria Hikmet; Katona, Borbala et al.

Part of Journal of Proteome Research, p. 4127-4137, 2018

• DOI for Integration of Transcriptomics and Antibody-Based Proteomics for Exploration of Proteins Expressed in Specialized Tissues

Enhanced validation of antibodies for research applications

Edfors, Fredrik; Hober, Andreas; Linderbäck, Klas; Maddalo, Gianluca et al.

Part of Nature Communications, 2018

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Characterization of avian influenza virus attachment patterns to human and pig tissues

Eriksson, Per; Lindskog, Cecilia; Engholm, Ebbe; Blixt, Ola et al.

Part of Scientific Reports, 2018

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VEGF receptor-2/neuropilin 1 trans-complex formation between endothelial and tumor cells is an independent predictor of pancreatic cancer survival

Morin, Eric; Sjöberg, Elin; Tjomsland, Vegard; Testini, Chiara et al.

Part of Journal of Pathology, p. 311-322, 2018

• DOI for VEGF receptor-2/neuropilin 1 trans-complex formation between endothelial and tumor cells is an independent predictor of pancreatic cancer survival
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An Integrative Analysis of Transcriptome and Epigenome Features of ASCL1-Positive Lung Adenocarcinomas

Miyashita, Naoya; Horie, Masafumi; Suzuki, Hiroshi I.; Yoshihara, Masahito et al.

Part of Journal of Thoracic Oncology, p. 1676-1691, 2018

• DOI for An Integrative Analysis of Transcriptome and Epigenome Features of ASCL1-Positive Lung Adenocarcinomas

Dishevelled enables casein kinase 1-mediated phosphorylation of Frizzled 6 required for cell membrane localization

Strakova, Katerina; Kowalski-Jahn, Maria; Gybel, Tomas; Valnohova, Jana et al.

Part of Journal of Biological Chemistry, p. 18477-18493, 2018

• DOI for Dishevelled enables casein kinase 1-mediated phosphorylation of Frizzled 6 required for cell membrane localization

The adult human testis transcriptional cell atlas

Guo, Jingtao; Grow, Edward J.; Mlcochova, Hana; Maher, Geoffrey J. et al.

Part of Cell Research, p. 1141-1157, 2018

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Fixation and Spread of Somatic Mutations in Adult Human Colonic Epithelium

Nicholson, Anna M.; Olpe, Cora; Hoyle, Alice; Thorsen, Ann-Sofie et al.

Part of Cell Stem Cell, p. 909-91800000000, 2018

• DOI for Fixation and Spread of Somatic Mutations in Adult Human Colonic Epithelium
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Validating Missing Proteins in Human Sperm Cells by Targeted Mass-Spectrometry- and Antibody-based Methods

Carapito, Christine; Duek, Paula; Macron, Charlotte; Seffals, Marine et al.

Part of Journal of Proteome Research, p. 4340-4351, 2017

• DOI for Validating Missing Proteins in Human Sperm Cells by Targeted Mass-Spectrometry- and Antibody-based Methods

A comprehensive structural, biochemical and biological profiling of the human NUDIX hydrolase family

Carreras-Puigvert, Jordi; Zitnik, Marinka; Jemth, Ann-Sofie; Carter, Megan et al.

Part of Nature Communications, 2017

• DOI for A comprehensive structural, biochemical and biological profiling of the human NUDIX hydrolase family
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A specific antibody to detect transcription factor T-Pit: a reliable marker of corticotroph cell differentiation and a tool to improve the classification of pituitary neuroendocrine tumours

Sjöstedt, Evelina; Bollerslev, Jens; Mulder, Jan; Lindskog, Cecilia et al.

Part of Acta Neuropathologica, p. 675-677, 2017

• DOI for A specific antibody to detect transcription factor T-Pit: a reliable marker of corticotroph cell differentiation and a tool to improve the classification of pituitary neuroendocrine tumours

A subcellular map of the human proteome

Thul, Peter J.; åkesson, Lovisa; Wiking, Mikaela; Mahdessian, Diana et al.

Part of Science, 2017

• DOI for A subcellular map of the human proteome

A pathology atlas of the human cancer transcriptome

Uhlen, Mathias; Zhang, Cheng; Lee, Sunjae; Sjöstedt, Evelina et al.

Part of Science, 2017

• DOI for A pathology atlas of the human cancer transcriptome

Chromatin and Single-Cell RNA- Seq Profiling Reveal Dynamic Signaling and Metabolic Transitions during Human Spermatogonial Stem Cell Development

Guo, Jingtao; Grow, Edward J.; Yi, Chongil; Mlcochova, Hana et al.

Part of Cell Stem Cell, p. 533-546, 2017

• DOI for Chromatin and Single-Cell RNA- Seq Profiling Reveal Dynamic Signaling and Metabolic Transitions during Human Spermatogonial Stem Cell Development

Looking for Missing Proteins in the Proteome of Human Spermatozoa: An Update

Vandenbrouck, Yves; Lane, Lydie; Carapito, Christine; Duek, Paula et al.

Part of Journal of Proteome Research, p. 3998-4019, 2016

• DOI for Looking for Missing Proteins in the Proteome of Human Spermatozoa: An Update

The Human Protein Atlas – an important resource for basic and clinical research

Lindskog, Cecilia

Part of Expert Review of Proteomics, p. 627-629, 2016

• DOI for The Human Protein Atlas – an important resource for basic and clinical research

Serum Autoantibody Profiling of Patients with Paraneoplastic and Non-Paraneoplastic Autoimmune Retinopathy

ten Berge, Josianne C.; van Rosmalen, Joost; Vermeer, Jacolien; Hellström, Cecilia et al.

Part of PLOS ONE, 2016

• DOI for Serum Autoantibody Profiling of Patients with Paraneoplastic and Non-Paraneoplastic Autoimmune Retinopathy

Protein profiles of CCL5, HPGDS, and NPSR1 in plasma reveal association with childhood asthma

Hamsten, C.; Häggmark, A.; Grundström, J.; Mikus, M. et al.

Part of Allergy. European Journal of Allergy and Clinical Immunology, p. 1357-1361, 2016

• DOI for Protein profiles of CCL5, HPGDS, and NPSR1 in plasma reveal association with childhood asthma

A Systematic Characterization of Aquaporin-9 Expression in Human Normal and Pathological Tissues

Lindskog, Cecilia; Asplund, Anna; Catrina, Anca; Nielsen, Soren et al.

Part of Journal of Histochemistry and Cytochemistry, p. 287-300, 2016

• DOI for A Systematic Characterization of Aquaporin-9 Expression in Human Normal and Pathological Tissues

Serum Autoantibody Profiling of Patients with Paraneoplastic and Non-Paraneoplastic Autoimmune Retinopathy

ten Berge, Josianne C.; van Rosmalen, Joost; Vermeer, Jacolien; Hellström, Cecilia et al.

Part of PLOS ONE, 2016

• DOI for Serum Autoantibody Profiling of Patients with Paraneoplastic and Non-Paraneoplastic Autoimmune Retinopathy
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Profiling cancer testis antigens in non-small-cell lung cancer

Djureinovic, Dijana; Hallström, Bjorn M.; Horie, Masafumi; Mattsson, Johanna Sofia Margareta et al.

Part of JCI INSIGHT, 2016

• DOI for Profiling cancer testis antigens in non-small-cell lung cancer

System-wide Clinical Proteomics of Breast Cancer Reveals Global Remodeling of Tissue Homeostasis

Pozniak, Yair; Balint-Lahat, Nora; Rudolph, Jan Daniel; Lindskog, Cecilia et al.

Part of CELL SYSTEMS, p. 172-184, 2016

• DOI for System-wide Clinical Proteomics of Breast Cancer Reveals Global Remodeling of Tissue Homeostasis

The Human Protein Atlas: an important resource for basic and clinical research

Lindskog, Cecilia

Part of Expert Review of Proteomics, p. 627-629, 2016

• DOI for The Human Protein Atlas: an important resource for basic and clinical research

Protein profiles of CCL5, HPGDS, and NPSR1 in plasma reveal association with childhood asthma

Hamsten, C.; Häggmark, A.; Grundström, J.; Mikus, M. et al.

Part of Allergy. European Journal of Allergy and Clinical Immunology, p. 1357-1361, 2016

• DOI for Protein profiles of CCL5, HPGDS, and NPSR1 in plasma reveal association with childhood asthma

The human cardiac and skeletal muscle proteomes defined by transcriptomics and antibody-based profiling

Lindskog, Cecilia; Linné, Jerker; Fagerberg, Linn; Hallstrom, Bjorn M. et al.

Part of BMC Genomics, 2015

• DOI for The human cardiac and skeletal muscle proteomes defined by transcriptomics and antibody-based profiling
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The Identification of Therapeutic Targets in Lung Cancer Based on Transcriptomic and Proteomic Characterization of Cancer-Testis Antigens

Djureinovic, Dijana; Hallström, Björn; Mattsson, Johanna Sofia Margareta; La Fleur, Linnea et al.

Part of Journal of Thoracic Oncology, 2015

The potential clinical impact of the tissue-based map of the human proteome

Lindskog, Cecilia

Part of Expert Review of Proteomics, p. 213-215, 2015

• DOI for The potential clinical impact of the tissue-based map of the human proteome

Tissue-based map of the human proteome

Uhlen, Mathias; Fagerberg, Linn; Hallstroem, Bjoern M.; Lindskog, Cecilia et al.

Part of Science, p. 394-+, 2015

• DOI for Tissue-based map of the human proteome

Proteomic Profiling Reveals Autoimmune Targets in Sarcoidosis

Haggmark, Anna; Hamsten, Carl; Wiklundh, Emil; Lindskog, Cecilia et al.

Part of American Journal of Respiratory and Critical Care Medicine, p. 574-583, 2015

• DOI for Proteomic Profiling Reveals Autoimmune Targets in Sarcoidosis

The Human Pancreas Proteome Defined by Transcriptomics and Antibody-Based Profiling

Danielsson, Angelika; Ponten, Fredrik; Fagerberg, Linn; Hallstrom, Bjorn M. et al.

Part of PLOS ONE, 2014

• DOI for The Human Pancreas Proteome Defined by Transcriptomics and Antibody-Based Profiling
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The human testis-specific proteome defined by transcriptomics and antibody-based profiling

Djureinovic, Dijana; Fagerberg, L.; Hallstrom, B.; Danielsson, A. et al.

Part of Molecular human reproduction, p. 476-488, 2014

• DOI for The human testis-specific proteome defined by transcriptomics and antibody-based profiling

The lung-specific proteome defined by integration of transcriptomics and antibody-based profiling

Lindskog, Cecilia; Fagerberg, Linn; Hallstrom, Bjorn; Edlund, Karolina et al.

Part of The FASEB Journal, p. 5184-5196, 2014

• DOI for The lung-specific proteome defined by integration of transcriptomics and antibody-based profiling

Analysis of Candidate Genes for Lineage-Specific Expression Changes in Humans and Primates

Lindskog, Cecilia; Kuhlwilm, Martin; Davierwala, Armaity; Fu, Ning et al.

Part of Journal of Proteome Research, p. 3596-3606, 2014

• DOI for Analysis of Candidate Genes for Lineage-Specific Expression Changes in Humans and Primates

Analysis of the human tissue-specific expression by genome-wide integration of transcriptomics and antibody-based proteomics

Fagerberg, Linn; Hallström, Björn M; Oksvold, Per; Kampf, Caroline et al.

Part of Molecular & Cellular Proteomics, p. 397-406, 2014

• DOI for Analysis of the human tissue-specific expression by genome-wide integration of transcriptomics and antibody-based proteomics

European H16N3 Gull Influenza Virus Attaches to the Human Respiratory Tract and Eye

Lindskog, Cecilia; Ellström, Patrik; Olsen, Björn; Pontén, Fredrik et al.

Part of PLOS ONE, 2013

• DOI for European H16N3 Gull Influenza Virus Attaches to the Human Respiratory Tract and Eye

European H16N3 Gull Influenza Virus Attaches to the Human Respiratory Tract and Eye

Lindskog, Cecilia; Ellström, Patrik; Olsen, Björn; Pontén, Fredrik et al.

Part of PLOS ONE, 2013

• DOI for European H16N3 Gull Influenza Virus Attaches to the Human Respiratory Tract and Eye
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CD99 is a novel prognostic stromal marker in non-small cell lung cancer

Edlund, Karolina; Lindskog, Cecilia; Saito, Akira; Berglund, Anders et al.

Part of International Journal of Cancer, p. 2264-2273, 2012

• DOI for CD99 is a novel prognostic stromal marker in non-small cell lung cancer

Novel pancreatic beta cell-specific proteins: Antibody-based proteomics for identification of new biomarker candidates

Lindskog, Cecilia; Korsgren, Olle; Pontén, Fredrik; Eriksson, Jan W et al.

Part of Journal of Proteomics, p. 2611-2620, 2012

• DOI for Novel pancreatic beta cell-specific proteins: Antibody-based proteomics for identification of new biomarker candidates

Novel antigen design for the generation of antibodies to G-protein-coupled receptors

Larsson, K.; Hofstrom, C.; Lindskog, Cecilia; Hansson, M. et al.

Part of JIM - Journal of Immunological Methods, p. 14-23, 2011

• DOI for Novel antigen design for the generation of antibodies to G-protein-coupled receptors

Antibody-based proteomics for discovery and exploration of proteins expressed in pancreatic islets

Lindskog, Cecilia; Asplund, Anna; Engkvist, Margareta; Pontén, Fredrik et al.

Part of Discovery Medicine, p. 565-578, 2010

A web-based tool for in silico biomarker discovery based on tissue-specific protein profiles in normal and cancer tissues

Björling, Erik; Lindskog, Cecilia; Oksvold, Per; Linné, Jerker et al.

Part of Molecular & Cellular Proteomics, p. 825-844, 2008

• DOI for A web-based tool for in silico biomarker discovery based on tissue-specific protein profiles in normal and cancer tissues

H16 Gull Influenza Virus Attaches to the Human Respiratory Tract and Eye

Lindskog, Cecilia; Ellström, Patrik; Olsen, Björn; Pontén, Fredrik et al.

Part of Emerging Infectious Diseases

The 2024 Report on the Human Proteome from the HUPO Human Proteome Project

Omenn, Gilbert S.; Orchard, Sandra; Lane, Lydie; Lindskog, Cecilia et al.

Part of Journal of Proteome Research, p. 5296-5311, 2024

• DOI for The 2024 Report on the Human Proteome from the HUPO Human Proteome Project

The 2023 Report on the Proteome from the HUPO Human Proteome Project

Omenn, Gilbert S.; Lane, Lydie; Overall, Christopher M.; Lindskog, Cecilia et al.

Part of Journal of Proteome Research, p. 532-549, 2024

• DOI for The 2023 Report on the Proteome from the HUPO Human Proteome Project

Transcriptomics resources of human tissues and organs

Uhlen, Mathias; Hallstrom, Bjorn M.; Lindskog Bergström, Cecilia; Mardinoglu, Adil et al.

Part of Molecular Systems Biology, 2016

• DOI for Transcriptomics resources of human tissues and organs
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Immunohistochemistry-based prognostic biomarkers in NSCLC: novel findings on the road to clinical use?

Lindskog, Cecilia; Edlund, Karolina; Mattsson, Johanna Sofia Margareta; Micke, Patrick

Part of Expert Review of Molecular Diagnostics, p. 471-490, 2015

• DOI for Immunohistochemistry-based prognostic biomarkers in NSCLC: novel findings on the road to clinical use?

Garbage in, garbage out: A critical evaluation of strategies used for validation of immunohistochemical biomarkers

O'Hurley, Gillian; Sjöstedt, Evelina; Rahman, Arman; Li, Bo et al.

Part of Molecular Oncology, p. 783-798, 2014

• DOI for Garbage in, garbage out: A critical evaluation of strategies used for validation of immunohistochemical biomarkers

The Human Protein Atlas and Antibody-Based Tissue Profiling in Clinical Proteomics

Katona, Borbala; Lindskog, Cecilia

Part of Clinical Proteomics, p. 191-206, Humana Press, 2022

• DOI for The Human Protein Atlas and Antibody-Based Tissue Profiling in Clinical Proteomics

Antibody Validation for Estrogen Receptor Beta

Birgersson, Madeleine; Katona, Borbala; Lindskog, Cecilia; Pontén, Fredrik et al.

Part of Estrogen Receptors. Methods in Molecular Biology, p. 1-23, Springer Nature, 2022

• DOI for Antibody Validation for Estrogen Receptor Beta

Tissue Microarrays for Analysis of Expression Patterns

Lindskog Bergström, Cecilia

2013

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Estimating Uncertainty in Deep Learning for Reporting Confidence: An Application on Cell Type Prediction in Testes Based on Proteomics

Ghoshal, Biraja; Lindskog, Cecilia; Tucker, Allan

Part of Advances In Intelligent Data Analysis XVIII, IDA 2020, p. 223-234, 2020

• DOI for Estimating Uncertainty in Deep Learning for Reporting Confidence: An Application on Cell Type Prediction in Testes Based on Proteomics
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Somatostatin receptor expression, mTOR pathway activation and BRAFV600E mutational status in glioneuronal tumours of childhood

Ehrstedt, Christoffer; Ahlsten, Gunnar; Strömberg, Bo; Lindskog, C et al.

Extending the immune phenotypes of lung cancer: Oasis in the desert

Backman, Max; La Fleur, Linnea; Kurppa, Pinja; Djureinovic, Dijana et al.

Targeting SOX2 in glioblastoma cells reveals heterogeneity in SOX2 dependency

Dalmo, Erika; Rosén, Gabriela; Niklasson, Mia; Bergström, Tobias et al.

Lead compound identification from first-in-class high affinity Affibody molecules binders towards DGCR2

Cheung, Pierre; Persson, Jonas; Zhang, Bo; Khalil, Amina et al.