Carina Farah Mugal

A Nearly Neutral Model of Molecular Signatures of Natural Selection after Change in Population Size

Müller, Rebekka; Kaj, Ingemar; Mugal, Carina

Part of Genome Biology and Evolution, 2022

• DOI for A Nearly Neutral Model of Molecular Signatures of Natural Selection after Change in Population Size
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Positive selection plays a major role in shaping signatures of differentiation across the genomic landscape of two independent Ficedula flycatcher species pairs

Chase, Madeline A.; Ellegren, Hans; Mugal, Carina F.

Part of Evolution, p. 2179-2196, 2021

• DOI for Positive selection plays a major role in shaping signatures of differentiation across the genomic landscape of two independent Ficedula flycatcher species pairs
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Tissue-specific patterns of regulatory changes underlying gene expression differences among Ficedula flycatchers and their naturally occurring F₁ hybrids

Mugal, Carina; Wang, Mi; Backström, Niclas; Wheatcroft, David et al.

Part of Genome Research, p. 1727-1739, 2020

• DOI for Tissue-specific patterns of regulatory changes underlying gene expression differences among Ficedula flycatchers and their naturally occurring F₁ hybrids
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GC-biased gene conversion conceals the prediction of the nearly neutral theory in avian genomes

Bolivar, Paulina; Gueguen, Laurent; Duret, Laurent; Ellegren, Hans et al.

Part of Genome Biology, 2019

• DOI for GC-biased gene conversion conceals the prediction of the nearly neutral theory in avian genomes
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Whole-genome patterns of linkage disequilibrium across flycatcher populations clarify the causes and consequences of fine-scale recombination rate variation in birds

Kawakami, Takeshi; Mugal, Carina; Suh, Alexander; Nater, Alexander et al.

Part of Molecular Ecology, p. 4158-4172, 2017

• DOI for Whole-genome patterns of linkage disequilibrium across flycatcher populations clarify the causes and consequences of fine-scale recombination rate variation in birds
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The non-equilibrium allele frequency spectrum in a Poisson random field framework

Kaj, Ingemar; Mugal, Carina F.

Part of Theoretical Population Biology, p. 51-64, 2016

• DOI for The non-equilibrium allele frequency spectrum in a Poisson random field framework

A Wright-Fisher graph model and the impact of directional selection on genetic variation

Kaj, Ingemar; Mugal, Carina F.; Müller-Widmann, Rebekka

Part of Theoretical Population Biology, p. 13-24, 2024

• DOI for A Wright-Fisher graph model and the impact of directional selection on genetic variation
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Regulatory and evolutionary impact of DNA methylation in two songbird species and their naturally occurring F₁ hybrids

Boman, Jesper; Qvarnström, Anna; Mugal, Carina

Part of BMC Biology, 2024

• DOI for Regulatory and evolutionary impact of DNA methylation in two songbird species and their naturally occurring F₁ hybrids
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The role of recombination dynamics in shaping signatures of direct and indirect selection across the Ficedula flycatcher genome

Chase, Madeline; Vilcot, Maurine; Mugal, Carina

Part of Proceedings of the Royal Society of London. Biological Sciences, 2024

• DOI for The role of recombination dynamics in shaping signatures of direct and indirect selection across the Ficedula flycatcher genome

A Nearly Neutral Model of Molecular Signatures of Natural Selection after Change in Population Size

Müller, Rebekka; Kaj, Ingemar; Mugal, Carina

Part of Genome Biology and Evolution, 2022

• DOI for A Nearly Neutral Model of Molecular Signatures of Natural Selection after Change in Population Size
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Single-Cell Transcriptomics reveals relaxed evolutionary constraint of spermatogenesis in two passerine birds as compared to mammals

Segami, Carolina; Semon, Marie; Cunha, Catarina; Bergin, Claudia et al.

2022

• DOI for Single-Cell Transcriptomics reveals relaxed evolutionary constraint of spermatogenesis in two passerine birds as compared to mammals
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A Wright-Fisher graph model and the impact of directional selection on genetic variation

Kaj, Ingemar; Mugal, Carina F.; Müller-Widmann, Rebekka

Part of Theoretical Population Biology, p. 13-24, 2024

• DOI for A Wright-Fisher graph model and the impact of directional selection on genetic variation
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Regulatory and evolutionary impact of DNA methylation in two songbird species and their naturally occurring F₁ hybrids

Boman, Jesper; Qvarnström, Anna; Mugal, Carina

Part of BMC Biology, 2024

• DOI for Regulatory and evolutionary impact of DNA methylation in two songbird species and their naturally occurring F₁ hybrids
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The role of recombination dynamics in shaping signatures of direct and indirect selection across the Ficedula flycatcher genome

Chase, Madeline; Vilcot, Maurine; Mugal, Carina

Part of Proceedings of the Royal Society of London. Biological Sciences, 2024

• DOI for The role of recombination dynamics in shaping signatures of direct and indirect selection across the Ficedula flycatcher genome

A Nearly Neutral Model of Molecular Signatures of Natural Selection after Change in Population Size

Müller, Rebekka; Kaj, Ingemar; Mugal, Carina

Part of Genome Biology and Evolution, 2022

• DOI for A Nearly Neutral Model of Molecular Signatures of Natural Selection after Change in Population Size
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The Effects of GC-Biased Gene Conversion on Patterns of Genetic Diversity among and across Butterfly Genomes

Boman, Jesper; Mugal, Carina F.; Backström, Niclas

Part of Genome Biology and Evolution, 2021

• DOI for The Effects of GC-Biased Gene Conversion on Patterns of Genetic Diversity among and across Butterfly Genomes
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Positive selection plays a major role in shaping signatures of differentiation across the genomic landscape of two independent Ficedula flycatcher species pairs

Chase, Madeline A.; Ellegren, Hans; Mugal, Carina F.

Part of Evolution, p. 2179-2196, 2021

• DOI for Positive selection plays a major role in shaping signatures of differentiation across the genomic landscape of two independent Ficedula flycatcher species pairs
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Polymorphism Data Assist Estimation of the Nonsynonymous over Synonymous Fixation Rate Ratio omega for Closely Related Species

Mugal, Carina; Kutschera, Verena E.; Botero-Castro, Fidel; Wolf, Jochen B. W. et al.

Part of Molecular biology and evolution, p. 260-279, 2020

• DOI for Polymorphism Data Assist Estimation of the Nonsynonymous over Synonymous Fixation Rate Ratio omega for Closely Related Species
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Tissue-specific patterns of regulatory changes underlying gene expression differences among Ficedula flycatchers and their naturally occurring F₁ hybrids

Mugal, Carina; Wang, Mi; Backström, Niclas; Wheatcroft, David et al.

Part of Genome Research, p. 1727-1739, 2020

• DOI for Tissue-specific patterns of regulatory changes underlying gene expression differences among Ficedula flycatchers and their naturally occurring F₁ hybrids
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GC-biased gene conversion conceals the prediction of the nearly neutral theory in avian genomes

Bolivar, Paulina; Gueguen, Laurent; Duret, Laurent; Ellegren, Hans et al.

Part of Genome Biology, 2019

• DOI for GC-biased gene conversion conceals the prediction of the nearly neutral theory in avian genomes
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Biased Inference of Selection Due to GC-Biased Gene Conversion and the Rate of Protein Evolution in Flycatchers When Accounting for It

Bolivar, Paulina; Mugal, Carina; Sebastiano, Matteo Rossi; Nater, Alexander et al.

Part of Molecular biology and evolution, p. 2475-2486, 2018

• DOI for Biased Inference of Selection Due to GC-Biased Gene Conversion and the Rate of Protein Evolution in Flycatchers When Accounting for It
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Positive selection on human gamete-recognition genes

Hart, Michael W.; Stover, Daryn A.; Guerra, Vanessa; Mozaffari, Sahar V. et al.

Part of PeerJ, 2018

• DOI for Positive selection on human gamete-recognition genes
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Sex-biased gene expression, sexual antagonism and levels of genetic diversity in the collared flycatcher (Ficedula albicollis) genome

Dutoit, Ludovic; Mugal, Carina; Bolivar, Paulina; Wang, Mi et al.

Part of Molecular Ecology, p. 3572-3581, 2018

• DOI for Sex-biased gene expression, sexual antagonism and levels of genetic diversity in the collared flycatcher (Ficedula albicollis) genome
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Whole-genome patterns of linkage disequilibrium across flycatcher populations clarify the causes and consequences of fine-scale recombination rate variation in birds

Kawakami, Takeshi; Mugal, Carina; Suh, Alexander; Nater, Alexander et al.

Part of Molecular Ecology, p. 4158-4172, 2017

• DOI for Whole-genome patterns of linkage disequilibrium across flycatcher populations clarify the causes and consequences of fine-scale recombination rate variation in birds
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Genomic distribution and estimation of nucleotide diversity in natural populations: perspectives from the collared flycatcher (Ficedula albicollis) genome

Dutoit, Ludovic; Burri, Reto; Nater, Alexander; Mugal, Carina F. et al.

Part of Molecular Ecology Resources, p. 586-597, 2017

• DOI for Genomic distribution and estimation of nucleotide diversity in natural populations: perspectives from the collared flycatcher (Ficedula albicollis) genome
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Covariation in levels of nucleotide diversity in homologous regions of the avian genome long after completion of lineage sorting

Dutoit, Ludovic; Vijay, Nagarjun; Mugal, Carina F.; Bossu, Christen M. et al.

Part of Proceedings of the Royal Society of London. Biological Sciences, 2017

• DOI for Covariation in levels of nucleotide diversity in homologous regions of the avian genome long after completion of lineage sorting

Recombination Rate Variation Modulates Gene Sequence Evolution Mainly via GC-Biased Gene Conversion, Not Hill-Robertson Interference, in an Avian System

Bolívar, Paulina; Mugal, Carina F; Nater, Alexander; Ellegren, Hans

Part of Molecular biology and evolution, p. 216-227, 2016

• DOI for Recombination Rate Variation Modulates Gene Sequence Evolution Mainly via GC-Biased Gene Conversion, Not Hill-Robertson Interference, in an Avian System
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High-Resolution Mapping of Crossover and Non-crossover Recombination Events by Whole-Genome Re-sequencing of an Avian Pedigree

Smeds, Linnéa; Mugal, Carina F; Qvarnström, Anna; Ellegren, Hans

Part of PLOS Genetics, 2016

• DOI for High-Resolution Mapping of Crossover and Non-crossover Recombination Events by Whole-Genome Re-sequencing of an Avian Pedigree
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Divergence in gene expression within and between two closely related flycatcher species

Uebbing, Severin; Künstner, Axel; Mäkinen, Hannu; Backström, Niclas et al.

Part of Molecular Ecology, p. 2015-2028, 2016

• DOI for Divergence in gene expression within and between two closely related flycatcher species
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Selection on coevolving human gamete recognition genes

Hart, M. W.; Stover, D.; Mozaffari, S. ; Ober, C. et al.

Part of Integrative and Comparative Biology, 2016

The non-equilibrium allele frequency spectrum in a Poisson random field framework

Kaj, Ingemar; Mugal, Carina F.

Part of Theoretical Population Biology, p. 51-64, 2016

• DOI for The non-equilibrium allele frequency spectrum in a Poisson random field framework

GC-biased gene conversion links the recombination landscape and demography to genomic base composition: GC-biased gene conversion drives genomic base composition across a wide range of species

Mugal, Carina F; Weber, Claudia C; Ellegren, Hans

Part of Bioessays, p. 1317-1326, 2015

• DOI for GC-biased gene conversion links the recombination landscape and demography to genomic base composition: GC-biased gene conversion drives genomic base composition across a wide range of species

Evolutionary Consequences of DNA Methylation on the GC Content in Vertebrate Genomes

Mugal, Carina F.; Arndt, Peter F.; Holm, Lena; Ellegren, Hans

Part of G3, p. 441-447, 2015

• DOI for Evolutionary Consequences of DNA Methylation on the GC Content in Vertebrate Genomes
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Linked selection and recombination rate variation drive the evolution of the genomic landscape of differentiation across the speciation continuum of Ficedula flycatchers

Burri, Reto; Nater, Alexander; Kawakami, Takeshi; Mugal, Carina F. et al.

Part of Genome Research, p. 1656-1665, 2015

• DOI for Linked selection and recombination rate variation drive the evolution of the genomic landscape of differentiation across the speciation continuum of Ficedula flycatchers
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Why Time Matters: Codon Evolution and the Temporal Dynamics of dN/dS

Mugal, Carina F; Wolf, Jochen B W; Kaj, Ingemar

Part of Molecular biology and evolution, p. 212-231, 2014

• DOI for Why Time Matters: Codon Evolution and the Temporal Dynamics of dN/dS

Twisted Signatures of GC-Biased Gene Conversion Embedded in an Evolutionary Stable Karyotype

Mugal, Carina F.; Arndt, Peter F.; Ellegren, Hans

Part of Molecular biology and evolution, p. 1700-1712, 2013

• DOI for Twisted Signatures of GC-Biased Gene Conversion Embedded in an Evolutionary Stable Karyotype

Genome-wide analysis in chicken reveals that local levels of genetic diversity are mainly governed by the rate of recombination

Mugal, Carina F.; Nabholz, Benoit; Ellegren, Hans

Part of BMC Genomics, p. 86, 2013

• DOI for Genome-wide analysis in chicken reveals that local levels of genetic diversity are mainly governed by the rate of recombination
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Substitution rate variation at human CpG sites correlates with non-CpG divergence, methylation level and GC content

Mugal, Carina F.; Ellegren, Hans

Part of Genome Biology, 2011

• DOI for Substitution rate variation at human CpG sites correlates with non-CpG divergence, methylation level and GC content

Conservation of Neutral Substitution Rate and Substitutional Asymmetries in Mammalian Genes

Mugal, Carina F.; Wolf, Jochen; von Gruenberg, H. H.; Ellegren, Hans

Part of Genome Biology and Evolution, p. 19-28, 2010

• DOI for Conservation of Neutral Substitution Rate and Substitutional Asymmetries in Mammalian Genes

Molecular evolution of genes in avian genomes

Nam, Kiwoong; Mugal, Carina; Nabholz, Benoit; Schielzeth, Holger et al.

Part of Genome Biology, 2010

• DOI for Molecular evolution of genes in avian genomes

Transcription-induced mutational strand bias and its effect on substitution rates in human genes

Mugal, Carina F.; von Grünberg, Hans-Hennig; Peifer, Martin

Part of Molecular biology and evolution, p. 131-142, 2009

• DOI for Transcription-induced mutational strand bias and its effect on substitution rates in human genes

The role of recombination dynamics in shaping signatures of direct and indirect selection across the Ficedula flycatcher genome

Chase, Madeline; Mugal, Carina

• DOI for The role of recombination dynamics in shaping signatures of direct and indirect selection across the Ficedula flycatcher genome

A high-density linkage map enables a second-generation collared flycatcher genome assembly and reveals the patterns of avian recombination rate variation and chromosomal evolution

Kawakami, Takeshi; Smeds, Linnea; Backstrom, Niclas; Husby, Arild et al.

Part of Molecular Ecology, p. 4035-4058, 2014

• DOI for A high-density linkage map enables a second-generation collared flycatcher genome assembly and reveals the patterns of avian recombination rate variation and chromosomal evolution
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Nucleotide Substitution Patterns in Vertebrate Genomes

Mugal, Carina Farah

2013

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Single-Cell Transcriptomics reveals relaxed evolutionary constraint of spermatogenesis in two passerine birds as compared to mammals

Segami, Carolina; Semon, Marie; Cunha, Catarina; Bergin, Claudia et al.

2022

• DOI for Single-Cell Transcriptomics reveals relaxed evolutionary constraint of spermatogenesis in two passerine birds as compared to mammals
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The genomic basis of hybrid male sterility in Ficedula flycatchers

Segami, Carolina; Mugal, Carina; Cunha, Catarina; Bergin, Claudia et al.

The combination of HiFi and HiC sequencing technologies enables the investigation of structural variants in speciation of Ficedula flycatchers

Chase, Madeline; Scofield, Douglas; Kraft, Fanny-Linn; Segami, Carolina et al.

Evidence that genetic drift not adaptation drives fast-Z and large-Z effects in Ficedula flycatchers

Chase, Madeline; Vilcot, Maurine; Mugal, Carina