Claes Wadelius
- Telephone:
- +46 18 471 40 76
- Mobile phone:
- +46 70 425 05 83
- E-mail:
- claes.wadelius@igp.uu.se
- Visiting address:
- BMC
Husargatan 3
751 22 Uppsala - Postal address:
- Box 815
751 08 Uppsala
Publications
Recent publications
Part of Lipids in Health and Disease, 2024
- DOI for A regulatory element associated to NAFLD in the promoter of DIO1 controls LDL-C, HDL-C and triglycerides in hepatic cells
- Download full text (pdf) of A regulatory element associated to NAFLD in the promoter of DIO1 controls LDL-C, HDL-C and triglycerides in hepatic cells
Machine Learning-Based Analysis of Glioma Grades Reveals Co-Enrichment
Part of Cancers, 2022
- DOI for Machine Learning-Based Analysis of Glioma Grades Reveals Co-Enrichment
- Download full text (pdf) of Machine Learning-Based Analysis of Glioma Grades Reveals Co-Enrichment
scSPLAT, a scalable plate-based protocol for single cell WGBS library preparation
Part of Scientific Reports, 2022
- DOI for scSPLAT, a scalable plate-based protocol for single cell WGBS library preparation
- Download full text (pdf) of scSPLAT, a scalable plate-based protocol for single cell WGBS library preparation
Organ-specific metabolic pathways distinguish prediabetes, type 2 diabetes, and normal tissues
Part of Cell Reports Medicine, 2022
- DOI for Organ-specific metabolic pathways distinguish prediabetes, type 2 diabetes, and normal tissues
- Download full text (pdf) of Organ-specific metabolic pathways distinguish prediabetes, type 2 diabetes, and normal tissues
Multifaceted regulation of hepatic lipid metabolism by YY1
Part of Life Science Alliance, 2021
- DOI for Multifaceted regulation of hepatic lipid metabolism by YY1
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All publications
Articles in journal
Part of Lipids in Health and Disease, 2024
- DOI for A regulatory element associated to NAFLD in the promoter of DIO1 controls LDL-C, HDL-C and triglycerides in hepatic cells
- Download full text (pdf) of A regulatory element associated to NAFLD in the promoter of DIO1 controls LDL-C, HDL-C and triglycerides in hepatic cells
Machine Learning-Based Analysis of Glioma Grades Reveals Co-Enrichment
Part of Cancers, 2022
- DOI for Machine Learning-Based Analysis of Glioma Grades Reveals Co-Enrichment
- Download full text (pdf) of Machine Learning-Based Analysis of Glioma Grades Reveals Co-Enrichment
scSPLAT, a scalable plate-based protocol for single cell WGBS library preparation
Part of Scientific Reports, 2022
- DOI for scSPLAT, a scalable plate-based protocol for single cell WGBS library preparation
- Download full text (pdf) of scSPLAT, a scalable plate-based protocol for single cell WGBS library preparation
Organ-specific metabolic pathways distinguish prediabetes, type 2 diabetes, and normal tissues
Part of Cell Reports Medicine, 2022
- DOI for Organ-specific metabolic pathways distinguish prediabetes, type 2 diabetes, and normal tissues
- Download full text (pdf) of Organ-specific metabolic pathways distinguish prediabetes, type 2 diabetes, and normal tissues
Multifaceted regulation of hepatic lipid metabolism by YY1
Part of Life Science Alliance, 2021
- DOI for Multifaceted regulation of hepatic lipid metabolism by YY1
- Download full text (pdf) of Multifaceted regulation of hepatic lipid metabolism by YY1
Part of Omics, p. 652-659, 2021
- DOI for The Thioesterase ACOT1 as a Regulator of Lipid Metabolism in Type 2 Diabetes Detected in a Multi-Omics Study of Human Liver
- Download full text (pdf) of The Thioesterase ACOT1 as a Regulator of Lipid Metabolism in Type 2 Diabetes Detected in a Multi-Omics Study of Human Liver
Part of Pharmacogenomics (London), p. 973-982, 2021
- DOI for Genome-wide association study of liver enzyme elevation in rheumatoid arthritis patients starting methotrexate
- Download full text (pdf) of Genome-wide association study of liver enzyme elevation in rheumatoid arthritis patients starting methotrexate
Single nucleus transcriptomics data integration recapitulates the major cell types in human liver
Part of Hepatology Research, p. 233-238, 2021
- DOI for Single nucleus transcriptomics data integration recapitulates the major cell types in human liver
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Polymorphisms rs55710213 and rs56334587 regulate SCD1 expression by modulating HNF4A binding
Part of Biochimica et Biophysica Acta. Gene Regulatory Mechanisms, 2021
- DOI for Polymorphisms rs55710213 and rs56334587 regulate SCD1 expression by modulating HNF4A binding
- Download full text (pdf) of Polymorphisms rs55710213 and rs56334587 regulate SCD1 expression by modulating HNF4A binding
Functional annotation of noncoding mutations in cancer
Part of Life Science Alliance, 2021
- DOI for Functional annotation of noncoding mutations in cancer
- Download full text (pdf) of Functional annotation of noncoding mutations in cancer
Part of Scientific Reports, 2020
- DOI for Integration of whole-body [18F]FDG PET/MRI with non-targeted metabolomics can provide new insights on tissue-specific insulin resistance in type 2 diabetes
- Download full text (pdf) of Integration of whole-body [18F]FDG PET/MRI with non-targeted metabolomics can provide new insights on tissue-specific insulin resistance in type 2 diabetes
Integrative pathway enrichment analysis of multivariate omics data.
Part of Nature Communications, 2020
Sex differences in oncogenic mutational processes.
Part of Nature Communications, 2020
Part of Communications Biology, 2020
- DOI for Cancer LncRNA Census reveals evidence for deep functional conservation of long noncoding RNAs in tumorigenesis
- Download full text (pdf) of Cancer LncRNA Census reveals evidence for deep functional conservation of long noncoding RNAs in tumorigenesis
Part of The Pharmacogenomics Journal, p. 770-783, 2020
- DOI for Genome-wide association study of angioedema induced by angiotensin-converting enzyme inhibitor and angiotensin receptor blocker treatment.
- Download full text (pdf) of Genome-wide association study of angioedema induced by angiotensin-converting enzyme inhibitor and angiotensin receptor blocker treatment.
Retrospective evaluation of whole exome and genome mutation calls in 746 cancer samples.
Part of Nature Communications, 2020
- DOI for Retrospective evaluation of whole exome and genome mutation calls in 746 cancer samples.
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Pan-cancer analysis of whole genomes
Part of Nature, p. 82-93, 2020
- DOI for Pan-cancer analysis of whole genomes
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Analyses of non-coding somatic drivers in 2,658 cancer whole genomes
Part of Nature, p. 102-111, 2020
- DOI for Analyses of non-coding somatic drivers in 2,658 cancer whole genomes
- Download full text (pdf) of Analyses of non-coding somatic drivers in 2,658 cancer whole genomes
Part of Omics, p. 180-194, 2020
- DOI for A Multi-Omics Approach to Liver Diseases: Integration of Single Nuclei Transcriptomics with Proteomics and HiCap Bulk Data in Human Liver
- Download full text (pdf) of A Multi-Omics Approach to Liver Diseases: Integration of Single Nuclei Transcriptomics with Proteomics and HiCap Bulk Data in Human Liver
Pathway and network analysis of more than 2500 whole cancer genomes.
Part of Nature Communications, 2020
- DOI for Pathway and network analysis of more than 2500 whole cancer genomes.
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rs953413 Regulates Polyunsaturated Fatty Acid Metabolism by Modulating ELOVL2 Expression
Part of iScience, 2020
- DOI for rs953413 Regulates Polyunsaturated Fatty Acid Metabolism by Modulating ELOVL2 Expression
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Part of Nature Medicine, p. 1390-1395, 2019
Part of Scientific Reports, 2019
- DOI for Allele specific chromatin signals, 3D interactions, and motif predictions for immune and B cell related diseases
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Part of Human Genomics, 2019
- DOI for Studies of liver tissue identify functional gene regulatory elements associated to gene expression, type 2 diabetes, and other metabolic diseases
- Download full text (pdf) of Studies of liver tissue identify functional gene regulatory elements associated to gene expression, type 2 diabetes, and other metabolic diseases
Part of iScience, p. 42-59, 2019
- DOI for Detailed Functional Characterization of a Waist-Hip Ratio Locus in 7p15.2 Defines an Enhancer Controlling Adipocyte Differentiation
- Download full text (pdf) of Detailed Functional Characterization of a Waist-Hip Ratio Locus in 7p15.2 Defines an Enhancer Controlling Adipocyte Differentiation
Part of Scientific Reports, 2019
- DOI for Intra- and inter-individual metabolic profiling highlights carnitine and lysophosphatidylcholine pathways as key molecular defects in type 2 diabetes
- Download full text (pdf) of Intra- and inter-individual metabolic profiling highlights carnitine and lysophosphatidylcholine pathways as key molecular defects in type 2 diabetes
Pandemrix-induced narcolepsy is associated with genes related to immunity and neuronal survival
Part of EBioMedicine, p. 595-604, 2019
- DOI for Pandemrix-induced narcolepsy is associated with genes related to immunity and neuronal survival
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Part of Pharmacogenomics (London), p. 201-213, 2017
- DOI for Genetic variants associated with angiotensin-converting enzyme inhibitor-induced cough: a genome-wide association study in a Swedish population
- Download full text (pdf) of Genetic variants associated with angiotensin-converting enzyme inhibitor-induced cough: a genome-wide association study in a Swedish population
Part of Hepatology Research, p. 826-830, 2017
PATZ1 down-regulates FADS1 by binding to rs174557 and is opposed by SP1/SREBP1c
Part of Nucleic Acids Research, p. 2408-2422, 2017
Maps of context-dependent putative regulatory regions and genomic signal interactions
Part of Nucleic Acids Research, p. 9110-9120, 2016
- DOI for Maps of context-dependent putative regulatory regions and genomic signal interactions
- Download full text (pdf) of Maps of context-dependent putative regulatory regions and genomic signal interactions
Part of Lipids in Health and Disease, 2016
- DOI for Looking beyond GWAS: allele-specific transcription factor binding drives the association of GALNT2 to HDL-C plasma levels
- Download full text (pdf) of Looking beyond GWAS: allele-specific transcription factor binding drives the association of GALNT2 to HDL-C plasma levels
Part of Genomics, p. 248-254, 2016
- DOI for Allele-specific transcription factor binding in liver and cervix cells unveils many likely drivers of GWAS signals
- Download full text (pdf) of Allele-specific transcription factor binding in liver and cervix cells unveils many likely drivers of GWAS signals
Part of Human Genetics, p. 485-497, 2016
- DOI for Allele-specific transcription factor binding to common and rare variants associated with disease and gene expression
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Novel regulatory variant detected on the VKORC1 haplotype that is associated with warfarin dose
Part of Pharmacogenomics (London), p. 1305-1314, 2016
- DOI for Novel regulatory variant detected on the VKORC1 haplotype that is associated with warfarin dose
- Download full text (pdf) of Novel regulatory variant detected on the VKORC1 haplotype that is associated with warfarin dose
Part of Human Mutation, p. 904-913, 2016
Part of Pharmacogenomics (London), p. 1425-1439, 2016
- DOI for Genetic determinants of warfarin maintenance dose and time in therapeutic treatment range: a RE-LY genomics substudy
- Download full text (pdf) of Genetic determinants of warfarin maintenance dose and time in therapeutic treatment range: a RE-LY genomics substudy
lobChIP: from cells to sequencing ready ChIP libraries in a single day
Part of Epigenetics & Chromatin, 2015
- DOI for lobChIP: from cells to sequencing ready ChIP libraries in a single day
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Part of BMC Genomics, 2015
- DOI for Different distribution of histone modifications in genes with unidirectional and bidirectional transcription and a role of CTCF and cohesin in directing transcription
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Nucleosome regulatory dynamics in response to TGF beta
Part of Nucleic Acids Research, p. 6921-6934, 2014
Nucleosome regulatory dynamics in response to TGF-beta treatment in HepG2 cells
Part of Nucleic Acids Research, p. 6921-6934, 2014
Part of Biochimica et Biophysica Acta, p. 1341-1350, 2014
Part of Acta Ophthalmologica, p. 238-242, 2014
Part of BMC Medical Genomics, p. 50, 2013
Genetic Determinants of Dabigatran Plasma Levels and Their Relation to Bleeding
Part of Circulation, p. 1404, 2013
Part of Algorithms for Molecular Biology, p. 2, 2012
- DOI for A strand specific high resolution normalization method for chip-sequencing data employing multiple experimental control measurements
- Download full text (pdf) of A strand specific high resolution normalization method for chip-sequencing data employing multiple experimental control measurements
Combinations of histone modifications mark exon inclusion levels
Part of PLOS ONE, 2012
- DOI for Combinations of histone modifications mark exon inclusion levels
- Download full text (pdf) of Combinations of histone modifications mark exon inclusion levels
Part of BMC Cancer, p. 450, 2011
- DOI for Cancer associated epigenetic transitions identified by genome-wide histone methylation binding profiles in human colorectal cancer samples and paired normal mucosa
- Download full text (pdf) of Cancer associated epigenetic transitions identified by genome-wide histone methylation binding profiles in human colorectal cancer samples and paired normal mucosa
SICTIN: Rapid footprinting of massively parallel sequencing data
Part of BioData Mining, 2010
- DOI for SICTIN: Rapid footprinting of massively parallel sequencing data
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Integrative epigenomic and genomic analysis of malignant pheochromocytoma
Part of Experimental and Molecular Medicine, p. 484-502, 2010
Part of Molecular Biology Reports, p. 2021-2030, 2010
Common variants near CAV1 and CAV2 are associated with primary open-angle glaucoma
Part of Nature Genetics, p. 906-909, 2010
Integrative epigenomic and genomic analysis of malignant pheochromocytoma.
Part of Experimental and Molecular Medicine, p. 484-502, 2010
Nucleosomes are well positioned in exons and carry characteristic histone modifications
Part of Genome Research, p. 1732-1741, 2009
Part of The FEBS Journal, p. 1878-1890, 2009
Part of Nucleic Acids Research, p. 7498-7508, 2009
Part of PLoS biology, 2009
Part of Nucleic Acids Research, 2009
Part of Genome Biology, 2009
Part of Nucleic Acids Research, p. 7498-7508, 2009
Part of Epigenetics, p. 107-113, 2009
Part of Molecular Biology Reports, p. 2021-2030, 2009
Part of Genome Research, p. 380-392, 2008
Monte Carlo feature selection for supervised classification
Part of Bioinformatics, p. 110-117, 2008
ORegAnno: an open-access community-driven resource for regulatory annotation
Part of Nucleic Acids Research, 2008
Part of Human and Experimental Toxicology, p. 65-71, 2008
In vitro analysis of DNA-protein interactions by proximity ligation
Part of Proceedings of the National Academy of Sciences of the United States of America, p. 3067-3072, 2007
Part of Genome Research, p. 708-719, 2007
Enhanced accumulation of A2E in individuals homozygous or heterozygous for mutations in BEST1 (VMD2)
Part of Experimental Eye Research, p. 34-43, 2007
Common sequence variants in the LOXL1 gene confer susceptibility to exfoliation glaucoma
Part of Science, p. 1397-1400, 2007
Placental transfer of quetiapine in relation to P-glycoprotein activity
Part of Journal of Psychopharmacology, p. 751-756, 2007
Part of Nature, p. 799-816, 2007
Association of warfarin dose with genes involved in its action and metabolism
Part of Human Genetics, p. 23-34, 2007
Part of The FASEB Journal, p. 178-80, 2006
Common VKORC1 and GGCX polymorphisms associated with warfarin dose
Part of The Pharmacogenomics Journal, p. 262-70, 2005
Part of Human Molecular Genetics, p. 3435-3447, 2005
Functional role of P-glycoprotein in the human blood-placental barrier
Part of Clinical Pharmacology and Therapeutics, p. 123-31, 2005
Warfarin sensitivity related to CYP2C9, CYP3A5, ABCB1 (MDR1) and other factors
Part of The Pharmacogenomics Journal, p. 40-8, 2004
Polymorphisms in NAT2, CYP2D6, CYP2C19 and GSTP1 and their association with prostate cancer
Part of Pharmacogenetics, p. 333-40, 1999
Prostate cancer associated with CYP17 genotype
Part of Pharmacogenetics, p. 635-9, 1999
Part of American Journal of Medical Genetics. Part A, p. 566-572, 1996
Lamotrigine and toxic epidermal necrolysis
Part of The Lancet, p. 1041, 1996
Chapters in book
Integrating genome and epigenome in human disease
Part of Epigenomics, p. 343-368, Springer Science+Business Media B.V., 2009
Datasets
Manuscripts (preprints)
funMotifs: Tissue-specific transcription factor motifs
Part of SUPPLEMENTARY MATERIAL: funMotifs: Tissue-specific transcription factor motifs
Nucleosome landscape in HepG2 cells in relation to NFY, HNF4a and FOXA2 binding sites