Claes Wadelius
- Telephone:
- +46 18 471 40 76
- Mobile phone:
- +46 70 425 05 83
- E-mail:
- claes.wadelius@igp.uu.se
- Visiting address:
- BMC
Husargatan 3
751 22 Uppsala - Postal address:
- Intendenturen
Box 570
751 23 Uppsala
Publications
Recent publications
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Gain-of-function enhancer variant near KCNB1 causes familial ST-depression syndrome
Part of European Heart Journal, p. 3486-3497, 2025
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Part of Lipids in Health and Disease, 2024
- DOI for A regulatory element associated to NAFLD in the promoter of DIO1 controls LDL-C, HDL-C and triglycerides in hepatic cells
- Download full text (pdf) of A regulatory element associated to NAFLD in the promoter of DIO1 controls LDL-C, HDL-C and triglycerides in hepatic cells
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Machine Learning-Based Analysis of Glioma Grades Reveals Co-Enrichment
Part of Cancers, 2022
- DOI for Machine Learning-Based Analysis of Glioma Grades Reveals Co-Enrichment
- Download full text (pdf) of Machine Learning-Based Analysis of Glioma Grades Reveals Co-Enrichment
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scSPLAT, a scalable plate-based protocol for single cell WGBS library preparation
Part of Scientific Reports, 2022
- DOI for scSPLAT, a scalable plate-based protocol for single cell WGBS library preparation
- Download full text (pdf) of scSPLAT, a scalable plate-based protocol for single cell WGBS library preparation
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Organ-specific metabolic pathways distinguish prediabetes, type 2 diabetes, and normal tissues
Part of Cell Reports Medicine, 2022
- DOI for Organ-specific metabolic pathways distinguish prediabetes, type 2 diabetes, and normal tissues
- Download full text (pdf) of Organ-specific metabolic pathways distinguish prediabetes, type 2 diabetes, and normal tissues
All publications
Articles in journal
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Gain-of-function enhancer variant near KCNB1 causes familial ST-depression syndrome
Part of European Heart Journal, p. 3486-3497, 2025
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Part of Lipids in Health and Disease, 2024
- DOI for A regulatory element associated to NAFLD in the promoter of DIO1 controls LDL-C, HDL-C and triglycerides in hepatic cells
- Download full text (pdf) of A regulatory element associated to NAFLD in the promoter of DIO1 controls LDL-C, HDL-C and triglycerides in hepatic cells
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Machine Learning-Based Analysis of Glioma Grades Reveals Co-Enrichment
Part of Cancers, 2022
- DOI for Machine Learning-Based Analysis of Glioma Grades Reveals Co-Enrichment
- Download full text (pdf) of Machine Learning-Based Analysis of Glioma Grades Reveals Co-Enrichment
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scSPLAT, a scalable plate-based protocol for single cell WGBS library preparation
Part of Scientific Reports, 2022
- DOI for scSPLAT, a scalable plate-based protocol for single cell WGBS library preparation
- Download full text (pdf) of scSPLAT, a scalable plate-based protocol for single cell WGBS library preparation
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Organ-specific metabolic pathways distinguish prediabetes, type 2 diabetes, and normal tissues
Part of Cell Reports Medicine, 2022
- DOI for Organ-specific metabolic pathways distinguish prediabetes, type 2 diabetes, and normal tissues
- Download full text (pdf) of Organ-specific metabolic pathways distinguish prediabetes, type 2 diabetes, and normal tissues
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Multifaceted regulation of hepatic lipid metabolism by YY1
Part of Life Science Alliance, 2021
- DOI for Multifaceted regulation of hepatic lipid metabolism by YY1
- Download full text (pdf) of Multifaceted regulation of hepatic lipid metabolism by YY1
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Part of Omics, p. 652-659, 2021
- DOI for The Thioesterase ACOT1 as a Regulator of Lipid Metabolism in Type 2 Diabetes Detected in a Multi-Omics Study of Human Liver
- Download full text (pdf) of The Thioesterase ACOT1 as a Regulator of Lipid Metabolism in Type 2 Diabetes Detected in a Multi-Omics Study of Human Liver
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Part of Pharmacogenomics (London), p. 973-982, 2021
- DOI for Genome-wide association study of liver enzyme elevation in rheumatoid arthritis patients starting methotrexate
- Download full text (pdf) of Genome-wide association study of liver enzyme elevation in rheumatoid arthritis patients starting methotrexate
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Single nucleus transcriptomics data integration recapitulates the major cell types in human liver
Part of Hepatology Research, p. 233-238, 2021
- DOI for Single nucleus transcriptomics data integration recapitulates the major cell types in human liver
- Download full text (pdf) of Single nucleus transcriptomics data integration recapitulates the major cell types in human liver
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Polymorphisms rs55710213 and rs56334587 regulate SCD1 expression by modulating HNF4A binding
Part of Biochimica et Biophysica Acta. Gene Regulatory Mechanisms, 2021
- DOI for Polymorphisms rs55710213 and rs56334587 regulate SCD1 expression by modulating HNF4A binding
- Download full text (pdf) of Polymorphisms rs55710213 and rs56334587 regulate SCD1 expression by modulating HNF4A binding
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Functional annotation of noncoding mutations in cancer
Part of Life Science Alliance, 2021
- DOI for Functional annotation of noncoding mutations in cancer
- Download full text (pdf) of Functional annotation of noncoding mutations in cancer
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Part of Scientific Reports, 2020
- DOI for Integration of whole-body [18F]FDG PET/MRI with non-targeted metabolomics can provide new insights on tissue-specific insulin resistance in type 2 diabetes
- Download full text (pdf) of Integration of whole-body [18F]FDG PET/MRI with non-targeted metabolomics can provide new insights on tissue-specific insulin resistance in type 2 diabetes
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Part of Omics, p. 180-194, 2020
- DOI for A Multi-Omics Approach to Liver Diseases: Integration of Single Nuclei Transcriptomics with Proteomics and HiCap Bulk Data in Human Liver
- Download full text (pdf) of A Multi-Omics Approach to Liver Diseases: Integration of Single Nuclei Transcriptomics with Proteomics and HiCap Bulk Data in Human Liver
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Pan-cancer analysis of whole genomes
Part of Nature, p. 82-93, 2020
- DOI for Pan-cancer analysis of whole genomes
- Download full text (pdf) of Pan-cancer analysis of whole genomes
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Analyses of non-coding somatic drivers in 2,658 cancer whole genomes
Part of Nature, p. 102-111, 2020
- DOI for Analyses of non-coding somatic drivers in 2,658 cancer whole genomes
- Download full text (pdf) of Analyses of non-coding somatic drivers in 2,658 cancer whole genomes
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Part of Communications Biology, 2020
- DOI for Cancer LncRNA Census reveals evidence for deep functional conservation of long noncoding RNAs in tumorigenesis
- Download full text (pdf) of Cancer LncRNA Census reveals evidence for deep functional conservation of long noncoding RNAs in tumorigenesis
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Sex differences in oncogenic mutational processes.
Part of Nature Communications, 2020
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Integrative pathway enrichment analysis of multivariate omics data.
Part of Nature Communications, 2020
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Retrospective evaluation of whole exome and genome mutation calls in 746 cancer samples.
Part of Nature Communications, 2020
- DOI for Retrospective evaluation of whole exome and genome mutation calls in 746 cancer samples.
- Download full text (pdf) of Retrospective evaluation of whole exome and genome mutation calls in 746 cancer samples.
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Pathway and network analysis of more than 2500 whole cancer genomes.
Part of Nature Communications, 2020
- DOI for Pathway and network analysis of more than 2500 whole cancer genomes.
- Download full text (pdf) of Pathway and network analysis of more than 2500 whole cancer genomes.
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Part of The Pharmacogenomics Journal, p. 770-783, 2020
- DOI for Genome-wide association study of angioedema induced by angiotensin-converting enzyme inhibitor and angiotensin receptor blocker treatment.
- Download full text (pdf) of Genome-wide association study of angioedema induced by angiotensin-converting enzyme inhibitor and angiotensin receptor blocker treatment.
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rs953413 Regulates Polyunsaturated Fatty Acid Metabolism by Modulating ELOVL2 Expression
Part of iScience, 2020
- DOI for rs953413 Regulates Polyunsaturated Fatty Acid Metabolism by Modulating ELOVL2 Expression
- Download full text (pdf) of rs953413 Regulates Polyunsaturated Fatty Acid Metabolism by Modulating ELOVL2 Expression
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Part of Nature Medicine, p. 1390-1395, 2019
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Part of Scientific Reports, 2019
- DOI for Allele specific chromatin signals, 3D interactions, and motif predictions for immune and B cell related diseases
- Download full text (pdf) of Allele specific chromatin signals, 3D interactions, and motif predictions for immune and B cell related diseases
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Part of Human Genomics, 2019
- DOI for Studies of liver tissue identify functional gene regulatory elements associated to gene expression, type 2 diabetes, and other metabolic diseases
- Download full text (pdf) of Studies of liver tissue identify functional gene regulatory elements associated to gene expression, type 2 diabetes, and other metabolic diseases
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Part of iScience, p. 42-59, 2019
- DOI for Detailed Functional Characterization of a Waist-Hip Ratio Locus in 7p15.2 Defines an Enhancer Controlling Adipocyte Differentiation
- Download full text (pdf) of Detailed Functional Characterization of a Waist-Hip Ratio Locus in 7p15.2 Defines an Enhancer Controlling Adipocyte Differentiation
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Part of Scientific Reports, 2019
- DOI for Intra- and inter-individual metabolic profiling highlights carnitine and lysophosphatidylcholine pathways as key molecular defects in type 2 diabetes
- Download full text (pdf) of Intra- and inter-individual metabolic profiling highlights carnitine and lysophosphatidylcholine pathways as key molecular defects in type 2 diabetes
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Pandemrix-induced narcolepsy is associated with genes related to immunity and neuronal survival
Part of EBioMedicine, p. 595-604, 2019
- DOI for Pandemrix-induced narcolepsy is associated with genes related to immunity and neuronal survival
- Download full text (pdf) of Pandemrix-induced narcolepsy is associated with genes related to immunity and neuronal survival
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Part of Hepatology Research, p. 826-830, 2017
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Part of Pharmacogenomics (London), p. 201-213, 2017
- DOI for Genetic variants associated with angiotensin-converting enzyme inhibitor-induced cough: a genome-wide association study in a Swedish population
- Download full text (pdf) of Genetic variants associated with angiotensin-converting enzyme inhibitor-induced cough: a genome-wide association study in a Swedish population
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PATZ1 down-regulates FADS1 by binding to rs174557 and is opposed by SP1/SREBP1c
Part of Nucleic Acids Research, p. 2408-2422, 2017
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Maps of context-dependent putative regulatory regions and genomic signal interactions
Part of Nucleic Acids Research, p. 9110-9120, 2016
- DOI for Maps of context-dependent putative regulatory regions and genomic signal interactions
- Download full text (pdf) of Maps of context-dependent putative regulatory regions and genomic signal interactions
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Part of Lipids in Health and Disease, 2016
- DOI for Looking beyond GWAS: allele-specific transcription factor binding drives the association of GALNT2 to HDL-C plasma levels
- Download full text (pdf) of Looking beyond GWAS: allele-specific transcription factor binding drives the association of GALNT2 to HDL-C plasma levels
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Part of Genomics, p. 248-254, 2016
- DOI for Allele-specific transcription factor binding in liver and cervix cells unveils many likely drivers of GWAS signals
- Download full text (pdf) of Allele-specific transcription factor binding in liver and cervix cells unveils many likely drivers of GWAS signals
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Part of Human Genetics, p. 485-497, 2016
- DOI for Allele-specific transcription factor binding to common and rare variants associated with disease and gene expression
- Download full text (pdf) of Allele-specific transcription factor binding to common and rare variants associated with disease and gene expression
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Novel regulatory variant detected on the VKORC1 haplotype that is associated with warfarin dose
Part of Pharmacogenomics (London), p. 1305-1314, 2016
- DOI for Novel regulatory variant detected on the VKORC1 haplotype that is associated with warfarin dose
- Download full text (pdf) of Novel regulatory variant detected on the VKORC1 haplotype that is associated with warfarin dose
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Part of Human Mutation, p. 904-913, 2016
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Part of Pharmacogenomics (London), p. 1425-1439, 2016
- DOI for Genetic determinants of warfarin maintenance dose and time in therapeutic treatment range: a RE-LY genomics substudy
- Download full text (pdf) of Genetic determinants of warfarin maintenance dose and time in therapeutic treatment range: a RE-LY genomics substudy
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lobChIP: from cells to sequencing ready ChIP libraries in a single day
Part of Epigenetics & Chromatin, 2015
- DOI for lobChIP: from cells to sequencing ready ChIP libraries in a single day
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Part of BMC Genomics, 2015
- DOI for Different distribution of histone modifications in genes with unidirectional and bidirectional transcription and a role of CTCF and cohesin in directing transcription
- Download full text (pdf) of Different distribution of histone modifications in genes with unidirectional and bidirectional transcription and a role of CTCF and cohesin in directing transcription
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Nucleosome regulatory dynamics in response to TGF-beta
Part of Nucleic Acids Research, p. 6921-6934, 2014
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Nucleosome regulatory dynamics in response to TGF beta
Part of Nucleic Acids Research, p. 6921-6934, 2014
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Part of Biochimica et Biophysica Acta, p. 1341-1350, 2014
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Part of Acta Ophthalmologica, p. 238-242, 2014
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Part of BMC Medical Genomics, p. 50, 2013
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Genetic Determinants of Dabigatran Plasma Levels and Their Relation to Bleeding
Part of Circulation, p. 1404, 2013
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Part of Algorithms for Molecular Biology, p. 2, 2012
- DOI for A strand specific high resolution normalization method for chip-sequencing data employing multiple experimental control measurements
- Download full text (pdf) of A strand specific high resolution normalization method for chip-sequencing data employing multiple experimental control measurements
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Combinations of histone modifications mark exon inclusion levels
Part of PLOS ONE, 2012
- DOI for Combinations of histone modifications mark exon inclusion levels
- Download full text (pdf) of Combinations of histone modifications mark exon inclusion levels
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Part of BMC Cancer, p. 450, 2011
- DOI for Cancer associated epigenetic transitions identified by genome-wide histone methylation binding profiles in human colorectal cancer samples and paired normal mucosa
- Download full text (pdf) of Cancer associated epigenetic transitions identified by genome-wide histone methylation binding profiles in human colorectal cancer samples and paired normal mucosa
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SICTIN: Rapid footprinting of massively parallel sequencing data
Part of BioData Mining, 2010
- DOI for SICTIN: Rapid footprinting of massively parallel sequencing data
- Download full text (pdf) of SICTIN: Rapid footprinting of massively parallel sequencing data
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Integrative epigenomic and genomic analysis of malignant pheochromocytoma
Part of Experimental and Molecular Medicine, p. 484-502, 2010
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Part of Molecular Biology Reports, p. 2021-2030, 2010
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Common variants near CAV1 and CAV2 are associated with primary open-angle glaucoma
Part of Nature Genetics, p. 906-909, 2010
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Integrative epigenomic and genomic analysis of malignant pheochromocytoma.
Part of Experimental and Molecular Medicine, p. 484-502, 2010
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Part of Epigenetics, p. 107-113, 2009
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Part of Nucleic Acids Research, p. 7498-7508, 2009
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Nucleosomes are well positioned in exons and carry characteristic histone modifications
Part of Genome Research, p. 1732-1741, 2009
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Part of Genome Biology, 2009
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Part of Nucleic Acids Research, 2009
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Part of PLoS biology, 2009
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Part of Nucleic Acids Research, p. 7498-7508, 2009
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Part of The FEBS Journal, p. 1878-1890, 2009
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Part of Molecular Biology Reports, p. 2021-2030, 2009
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Part of Genome Research, p. 380-392, 2008
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Monte Carlo feature selection for supervised classification
Part of Bioinformatics, p. 110-117, 2008
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ORegAnno: an open-access community-driven resource for regulatory annotation
Part of Nucleic Acids Research, 2008
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Part of Human and Experimental Toxicology, p. 65-71, 2008
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In vitro analysis of DNA-protein interactions by proximity ligation
Part of Proceedings of the National Academy of Sciences of the United States of America, p. 3067-3072, 2007
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Part of Genome Research, p. 708-719, 2007
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Common sequence variants in the LOXL1 gene confer susceptibility to exfoliation glaucoma
Part of Science, p. 1397-1400, 2007
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Enhanced accumulation of A2E in individuals homozygous or heterozygous for mutations in BEST1 (VMD2)
Part of Experimental Eye Research, p. 34-43, 2007
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Part of Nature, p. 799-816, 2007
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Placental transfer of quetiapine in relation to P-glycoprotein activity
Part of Journal of Psychopharmacology, p. 751-756, 2007
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Association of warfarin dose with genes involved in its action and metabolism
Part of Human Genetics, p. 23-34, 2007
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Part of The FASEB Journal, p. 178-80, 2006
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Common VKORC1 and GGCX polymorphisms associated with warfarin dose
Part of The Pharmacogenomics Journal, p. 262-70, 2005
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Functional role of P-glycoprotein in the human blood-placental barrier
Part of Clinical Pharmacology and Therapeutics, p. 123-31, 2005
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Part of Human Molecular Genetics, p. 3435-3447, 2005
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Warfarin sensitivity related to CYP2C9, CYP3A5, ABCB1 (MDR1) and other factors
Part of The Pharmacogenomics Journal, p. 40-8, 2004
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Prostate cancer associated with CYP17 genotype
Part of Pharmacogenetics, p. 635-9, 1999
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Polymorphisms in NAT2, CYP2D6, CYP2C19 and GSTP1 and their association with prostate cancer
Part of Pharmacogenetics, p. 333-40, 1999
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Part of American Journal of Medical Genetics. Part A, p. 566-572, 1996
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Lamotrigine and toxic epidermal necrolysis
Part of The Lancet, p. 1041, 1996
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Chapters in book
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Integrating genome and epigenome in human disease
Part of Epigenomics, p. 343-368, Springer Science+Business Media B.V., 2009
Datasets
Manuscripts (preprints)
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funMotifs: Tissue-specific transcription factor motifs
Part of SUPPLEMENTARY MATERIAL: funMotifs: Tissue-specific transcription factor motifs
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Nucleosome landscape in HepG2 cells in relation to NFY, HNF4a and FOXA2 binding sites
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