Leif Andersson

Regulatory and disruptive variants in the CLCN2 gene are associated with modified skin color pattern phenotypes in the corn snake

Montandon, Sophie A.; Beaudier, Pierre; Ullate-Agote, Asier; Helleboid, Pierre-Yves et al.

Part of Genome Biology, 2025

• DOI for Regulatory and disruptive variants in the CLCN2 gene are associated with modified skin color pattern phenotypes in the corn snake
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Skin regional specification and higher-order HoxC regulation

Li, Shu-Man Hsieh; Liang, Ya-Chen; Jiang, Ting-Xin; Jea, Wen Chien et al.

Part of Science Advances, 2025

• DOI for Skin regional specification and higher-order HoxC regulation
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Population genomic analysis identifies the complex structural variation at the fibromelanosis (FM) locus in chicken

Ma, Cheng; Andersson, Leif

Part of Scientific Reports, 2025

• DOI for Population genomic analysis identifies the complex structural variation at the fibromelanosis (FM) locus in chicken
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An intronic copy number variation in Syntaxin 17 determines speed of greying and melanoma incidence in Grey horses

Rubin, Carl-Johan; Hodge, McKaela; Naboulsi, Rakan; Beckman, Madeleine et al.

Part of Nature Communications, 2024

• DOI for An intronic copy number variation in Syntaxin 17 determines speed of greying and melanoma incidence in Grey horses
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Conservation of Affinity Rather Than Sequence Underlies a Dynamic Evolution of the Motif-Mediated p53/MDM2 Interaction in Ray-Finned Fishes

Mihalič, Filip; Arcila, Dahiana; Pettersson, Mats; Farkhondehkish, Pouria et al.

Part of Molecular biology and evolution, 2024

• DOI for Conservation of Affinity Rather Than Sequence Underlies a Dynamic Evolution of the Motif-Mediated p53/MDM2 Interaction in Ray-Finned Fishes
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Regulatory and disruptive variants in the CLCN2 gene are associated with modified skin color pattern phenotypes in the corn snake

Montandon, Sophie A.; Beaudier, Pierre; Ullate-Agote, Asier; Helleboid, Pierre-Yves et al.

Part of Genome Biology, 2025

• DOI for Regulatory and disruptive variants in the CLCN2 gene are associated with modified skin color pattern phenotypes in the corn snake
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Skin regional specification and higher-order HoxC regulation

Li, Shu-Man Hsieh; Liang, Ya-Chen; Jiang, Ting-Xin; Jea, Wen Chien et al.

Part of Science Advances, 2025

• DOI for Skin regional specification and higher-order HoxC regulation
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Population genomic analysis identifies the complex structural variation at the fibromelanosis (FM) locus in chicken

Ma, Cheng; Andersson, Leif

Part of Scientific Reports, 2025

• DOI for Population genomic analysis identifies the complex structural variation at the fibromelanosis (FM) locus in chicken
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An intronic copy number variation in Syntaxin 17 determines speed of greying and melanoma incidence in Grey horses

Rubin, Carl-Johan; Hodge, McKaela; Naboulsi, Rakan; Beckman, Madeleine et al.

Part of Nature Communications, 2024

• DOI for An intronic copy number variation in Syntaxin 17 determines speed of greying and melanoma incidence in Grey horses
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Conservation of Affinity Rather Than Sequence Underlies a Dynamic Evolution of the Motif-Mediated p53/MDM2 Interaction in Ray-Finned Fishes

Mihalič, Filip; Arcila, Dahiana; Pettersson, Mats; Farkhondehkish, Pouria et al.

Part of Molecular biology and evolution, 2024

• DOI for Conservation of Affinity Rather Than Sequence Underlies a Dynamic Evolution of the Motif-Mediated p53/MDM2 Interaction in Ray-Finned Fishes
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Discriminating populations of Atlantic herring mixing in the Norwegian Sea feeding ground using single nucleotide polymorphisms (SNPs)

Pampoulie, Christophe; Slotte, Aril; Óskarsson, Guðmundur J.; Ólafsdóttir, Guðbjörg et al.

Part of Marine Ecology Progress Series, p. 227-240, 2024

• DOI for Discriminating populations of Atlantic herring mixing in the Norwegian Sea feeding ground using single nucleotide polymorphisms (SNPs)
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Selection against domestication alleles in introduced rabbit populations

Andrade, Pedro; Alves, Joel M.; Pereira, Paulo; Rubin, Carl-Johan et al.

Part of Nature Ecology & Evolution, 2024

• DOI for Selection against domestication alleles in introduced rabbit populations

Limited Parallelism in Genetic Adaptation to Brackish Water Bodies in European Sprat and Atlantic Herring

Pettersson, Mats; Quintela, Maria; Besnier, Francois; Deng, Qiaoling et al.

Part of Genome Biology and Evolution, 2024

• DOI for Limited Parallelism in Genetic Adaptation to Brackish Water Bodies in European Sprat and Atlantic Herring
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Research Note: Phenotypic trends for the multigenerational advanced intercross of the Virginia body weight lines of chickens

Siegel, P. B.; Honaker, C. F.; Andersson, Leif

Part of Poultry Science, 2024

• DOI for Research Note: Phenotypic trends for the multigenerational advanced intercross of the Virginia body weight lines of chickens
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Adaptation to seasonal reproduction and environment-associated factors drive temporal and spatial differentiation in northwest Atlantic herring despite gene flow

Fuentes Pardo, Angela P.; Stanley, Ryan; Bourne, Christina; Singh, Rabindra et al.

Part of Evolutionary Applications, 2024

• DOI for Adaptation to seasonal reproduction and environment-associated factors drive temporal and spatial differentiation in northwest Atlantic herring despite gene flow
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Copy number variation and elevated genetic diversity at immune trait loci in Atlantic and Pacific herring

Mohamadnejad Sangdehi, Fahime; Jamsandekar, Minal S.; Enbody, Erik D.; Pettersson, Mats E. et al.

Part of BMC Genomics, 2024

• DOI for Copy number variation and elevated genetic diversity at immune trait loci in Atlantic and Pacific herring
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Evolution of fast-growing piscivorous herring in the young Baltic Sea

Goodall, Jake; Pettersson, Mats E.; Bergström, Ulf; Cocco, Arianna et al.

Part of Nature Communications, 2024

• DOI for Evolution of fast-growing piscivorous herring in the young Baltic Sea
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Genetic Stock Identification Reveals Mismatches Between Management Areas and Population Genetic Structure in a Migratory Pelagic Fish

Seljestad, Gaute Wilhelmsen; Quintela, Maria; Bekkevold, Dorte; Pampoulie, Christophe et al.

Part of Evolutionary Applications, 2024

• DOI for Genetic Stock Identification Reveals Mismatches Between Management Areas and Population Genetic Structure in a Migratory Pelagic Fish
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Targeting ZC3H11A elicits immunogenic cancer cell death through augmentation of antigen presentation and interferon response

Ali, Arwa; Contreras, Paola; Darweesh, Mahmoud; Andersson, Leif et al.

Part of Molecular Therapy Nucleic Acids, 2024

• DOI for Targeting ZC3H11A elicits immunogenic cancer cell death through augmentation of antigen presentation and interferon response
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The origin and maintenance of supergenes contributing to ecological adaptation in Atlantic herring

Jamsandekar, Minal; Ferreira, Mafalda S.; Pettersson, Mats; Farrell, Edward D. et al.

Part of Nature Communications, 2024

• DOI for The origin and maintenance of supergenes contributing to ecological adaptation in Atlantic herring
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Ablation of ZC3H11A causes early embryonic lethality and dysregulation of metabolic processes

Younis, Shady; Jouneau, Alice; Larsson, Mårten; Oudin, Jean-Francois et al.

Part of Proceedings of the National Academy of Sciences of the United States of America, 2023

• DOI for Ablation of ZC3H11A causes early embryonic lethality and dysregulation of metabolic processes
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The RNA-binding protein ZC3H11A interacts with the nuclear poly(A)-binding protein PABPN1 and alters polyadenylation of viral transcripts

Kases, Katharina; Schubert, Erik; Hajikhezri, Zamaneh; Larsson, Mårten et al.

Part of Journal of Biological Chemistry, 2023

• DOI for The RNA-binding protein ZC3H11A interacts with the nuclear poly(A)-binding protein PABPN1 and alters polyadenylation of viral transcripts
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Community-wide genome sequencing reveals 30 years of Darwin's finch evolution

Enbody, Erik D.; Sendell-Price, Ashley T.; Sprehn, C. Grace; Rubin, Carl-Johan et al.

Part of Science, p. 1427-+, 2023

• DOI for Community-wide genome sequencing reveals 30 years of Darwin's finch evolution

Low Mutation Load in a Supergene Underpinning Alternative Male Mating Strategies in Ruff (Calidris pugnax)

Hill, Jason; Enbody, Erik D.; Bi, Huijuan; Lamichhaney, Sangeet et al.

Part of Molecular biology and evolution, 2023

• DOI for Low Mutation Load in a Supergene Underpinning Alternative Male Mating Strategies in Ruff (Calidris pugnax)
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The genomic basis and environmental correlates of local adaptation in the Atlantic horse mackerel (Trachurus trachurus)

Fuentes-Pardo, Angela P.; Farrell, Edward D.; Pettersson, Mats E.; Sprehn, C. Grace et al.

Part of Evolutionary Applications, p. 1201-1219, 2023

• DOI for The genomic basis and environmental correlates of local adaptation in the Atlantic horse mackerel (Trachurus trachurus)
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A Long-Standing Hybrid Population Between Pacific and Atlantic Herring in a Subarctic Fjord of Norway

Pettersson, Mats; Fuentes Pardo, Angela P.; Rochus, Christina Marie; Enbody, Erik D. et al.

Part of Genome Biology and Evolution, 2023

• DOI for A Long-Standing Hybrid Population Between Pacific and Atlantic Herring in a Subarctic Fjord of Norway
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Introgression Underlies Phylogenetic Uncertainty But Not Parallel Plumage Evolution in a Recent Songbird Radiation

Rancilhac, Loïs; Enbody, Erik D.; Harris, Rebecca; Saitoh, Takema et al.

Part of Systematic Biology, 2023

• DOI for Introgression Underlies Phylogenetic Uncertainty But Not Parallel Plumage Evolution in a Recent Songbird Radiation
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Mixed-stock analysis of Atlantic herring (Clupea harengus): a tool for identifying management units and complex migration dynamics

Bekkevold, Dorte; Berg, Florian; Polte, Patrick; Bartolino, Valerio et al.

Part of ICES Journal of Marine Science, p. 173-184, 2023

• DOI for Mixed-stock analysis of Atlantic herring (Clupea harengus): a tool for identifying management units and complex migration dynamics
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A frame-shift mutation in COMTD1 is associated with impaired pheomelanin pigmentation in chicken

Bi, Huijuan; Tranell, Jonas; Harper, Dawn C.; Lin, Weifeng et al.

Part of PLOS Genetics, 2023

• DOI for A frame-shift mutation in COMTD1 is associated with impaired pheomelanin pigmentation in chicken
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Spatiotemporal variations in retrovirus-host interactions among Darwin’s finches

Hill, Jason; Lillie, Mette; Pettersson, Mats; Rubin, Carl-Johan et al.

Part of Nature Communications, 2022

• DOI for Spatiotemporal variations in retrovirus-host interactions among Darwin’s finches
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Rapid adaptive radiation of Darwin's finches depends on ancestral genetic modules

Rubin, Carl-Johan; Enbody, Erik D.; Dobreva, Mariya P.; Abzhanov, Arhat et al.

Part of Science Advances, 2022

• DOI for Rapid adaptive radiation of Darwin's finches depends on ancestral genetic modules
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Hmga2 deficiency is associated with allometric growth retardation, infertility, and behavioral abnormalities in mice

Lee, Mi Ok; Li, Jingyi; Davis, Brian W.; Upadhyay, Srijana et al.

Part of G3, 2022

• DOI for Hmga2 deficiency is associated with allometric growth retardation, infertility, and behavioral abnormalities in mice
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A baseline for the genetic stock identification of Atlantic herring, Clupea harengus, in ICES Divisions 6.a, 7.b-c

Farrell, Edward D. D.; Andersson, Leif; Bekkevold, Dorte; Campbell, Neil et al.

Part of Royal Society Open Science, 2022

• DOI for A baseline for the genetic stock identification of Atlantic herring, Clupea harengus, in ICES Divisions 6.a, 7.b-c
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ZC3H11A loss of function enhances NF-κB signaling through defective IκBα protein expression

Darweesh, Mahmoud; Younis, Shady; Hajikhezri, Zamaneh; Ali, Arwa et al.

Part of Frontiers in Immunology, 2022

• DOI for ZC3H11A loss of function enhances NF-κB signaling through defective IκBα protein expression
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Gregor Johann Mendel and the development of modern evolutionary biology

Stenseth, Nils Chr; Andersson, Leif; Hoekstra, Hopi E.

Part of Proceedings of the National Academy of Sciences of the United States of America, 2022

• DOI for Gregor Johann Mendel and the development of modern evolutionary biology
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Hop Mice Display Synchronous Hindlimb Locomotion and a Ventrally Fused Lumbar Spinal Cord Caused by a Point Mutation in Ttc26

Rabe Bernhardt, Nadine; Memic, Fatima; Velica, Anna; Tran, Michelle A. et al.

Part of eNeuro, 2022

• DOI for Hop Mice Display Synchronous Hindlimb Locomotion and a Ventrally Fused Lumbar Spinal Cord Caused by a Point Mutation in Ttc26
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A multispecies BCO2 beak color polymorphism in the Darwin's finch radiation

Enbody, Erik D.; Sprehn, Charlotte Grace; Abzhanov, Arhat; Bi, Huijuan et al.

Part of Current Biology, p. 5597-56040000000, 2021

• DOI for A multispecies BCO2 beak color polymorphism in the Darwin's finch radiation
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The crest phenotype in domestic chicken is caused by a 197 bp duplication in the intron of HOXC10

Li, Jingyi; Lee, Mi-Ok; Davis, Brian W.; Wu, Ping et al.

Part of G3, 2021

• DOI for The crest phenotype in domestic chicken is caused by a 197 bp duplication in the intron of HOXC10
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Asymmetric introgression reveals the genetic architecture of a plumage trait

Semenov, Georgy A.; Linck, Ethan; Enbody, Erik D.; Harris, Rebecca B. et al.

Part of Nature Communications, 2021

• DOI for Asymmetric introgression reveals the genetic architecture of a plumage trait
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Functional differences between TSHR alleles associate with variation in spawning season in Atlantic herring

Chen, Junfeng; Bi, Huijuan; Pettersson, Mats; Sato, Daiki et al.

Part of Communications Biology, 2021

• DOI for Functional differences between TSHR alleles associate with variation in spawning season in Atlantic herring
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Porcine ZBED6 regulates growth of skeletal muscle and internal organs via multiple targets

Wang, Dandan; Pan, Dengke; Xie, Baocai; Wang, Shengnan et al.

Part of PLOS Genetics, 2021

• DOI for Porcine ZBED6 regulates growth of skeletal muscle and internal organs via multiple targets
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A loss-of-function mutation in RORB disrupts saltatorial locomotion in rabbits

Carneiro, Miguel; Vieillard, Jennifer; Andrade, Pedro; Boucher, Samuel et al.

Part of PLOS Genetics, 2021

• DOI for A loss-of-function mutation in RORB disrupts saltatorial locomotion in rabbits
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Ecological adaptation in European eels is based on phenotypic plasticity

Enbody, Erik D.; Pettersson, Mats; Sprehn, Charlotte Grace; Palm, Stefan et al.

Part of Proceedings of the National Academy of Sciences of the United States of America, 2021

• DOI for Ecological adaptation in European eels is based on phenotypic plasticity
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Cis-acting mutation affecting GJA5 transcription is underlying the Melanotic within-feather pigmentation pattern in chickens

Li, Jingyi; Lee, Mi-Ok; Chen, Junfeng; Davis, Brian W. et al.

Part of Proceedings of the National Academy of Sciences of the United States of America, 2021

• DOI for Cis-acting mutation affecting GJA5 transcription is underlying the Melanotic within-feather pigmentation pattern in chickens
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A combination of genetic and phenotypic characterization of spring- and autumn-spawning herring suggests gene flow between populations

Berg, Florian; Ostgaard, Hedda D.; Slotte, Aril; Andersson, Leif et al.

Part of ICES Journal of Marine Science, p. 694-703, 2021

• DOI for A combination of genetic and phenotypic characterization of spring- and autumn-spawning herring suggests gene flow between populations

A Chromosome-Level Assembly of Blunt Snout Bream (Megalobrama amblycephala) Genome Reveals an Expansion of Olfactory Receptor Genes in Freshwater Fish

Liu, Han; Chen, Chunhai; Lv, Maolin; Liu, Ning et al.

Part of Molecular biology and evolution, p. 4238-4251, 2021

• DOI for A Chromosome-Level Assembly of Blunt Snout Bream (Megalobrama amblycephala) Genome Reveals an Expansion of Olfactory Receptor Genes in Freshwater Fish
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ZBED6 counteracts high-fat diet-induced glucose intolerance by maintaining beta cell area and reducing excess mitochondrial activation

Wang, Xuan; Younis, Shady; Cen, Jing; Wang, Yun et al.

Part of Diabetologia, p. 2292-2305, 2021

• DOI for ZBED6 counteracts high-fat diet-induced glucose intolerance by maintaining beta cell area and reducing excess mitochondrial activation
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The feather pattern autosomal barring in chicken is strongly associated with segregation at the MC1R locus

Schwochow, Doreen; Bornelöv, Susanne; Jiang, Tingxing; Li, Jingyi et al.

Part of Pigment Cell & Melanoma Research, p. 1015-1028, 2021

• DOI for The feather pattern autosomal barring in chicken is strongly associated with segregation at the MC1R locus
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ZBED6 regulates Igf2 expression partially through its regulation of miR483 expression

Naboulsi, Rakan; Larsson, Mårten; Andersson, Leif; Younis, Shady

Part of Scientific Reports, 2021

• DOI for ZBED6 regulates Igf2 expression partially through its regulation of miR483 expression
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Structure and Characterization of Phosphoglucomutase 5 from Atlantic and Baltic Herring: An Inactive Enzyme with Intact Substrate Binding

Gustafsson, Robert; Eckhard, Ulrich; Ye, Weihua; Enbody, Erik D. et al.

Part of Biomolecules, 2020

• DOI for Structure and Characterization of Phosphoglucomutase 5 from Atlantic and Baltic Herring: An Inactive Enzyme with Intact Substrate Binding
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Mutations Upstream of the TBX5 and PITX1 Transcription Factor Genes Are Associated with Feathered Legs in the Domestic Chicken

Li, Jingyi; Lee, MiOk; Davis, Brian W.; Lamichhaney, Sangeet et al.

Part of Molecular biology and evolution, p. 2477-2486, 2020

• DOI for Mutations Upstream of the TBX5 and PITX1 Transcription Factor Genes Are Associated with Feathered Legs in the Domestic Chicken

Reconstruction of the birth of a male sex chromosome present in Atlantic herring

Rafati, Nima; Chen, Junfeng; Herpin, Amaury; Pettersson, Mats et al.

Part of Proceedings of the National Academy of Sciences of the United States of America, p. 24359-24368, 2020

• DOI for Reconstruction of the birth of a male sex chromosome present in Atlantic herring
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The importance of the ZBED6-IGF2 axis for metabolic regulation in mouse myoblast cells

Younis, Shady; Naboulsi, Rakan; Wang, Xuan; Cao, Xiaofang et al.

Part of The FASEB Journal, p. 10250-10266, 2020

• DOI for The importance of the ZBED6-IGF2 axis for metabolic regulation in mouse myoblast cells
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Brain Transcriptomics of Wild and Domestic Rabbits Suggests That Changes in Dopamine Signaling and Ciliary Function Contributed to Evolution of Tameness

Sato, Daiki X.; Rafati, Nima; Ring, Henrik; Younis, Shady et al.

Part of Genome Biology and Evolution, p. 1918-1928, 2020

• DOI for Brain Transcriptomics of Wild and Domestic Rabbits Suggests That Changes in Dopamine Signaling and Ciliary Function Contributed to Evolution of Tameness

Female-biased gene flow between two species of Darwin’s finches

Lamichhaney, Sangeet; Han, Fan; Webster, Matthew Thomas; Grant, B. Rosemary et al.

Part of Nature Ecology & Evolution, p. 979-986, 2020

• DOI for Female-biased gene flow between two species of Darwin’s finches

Respiration rates of herring larvae at different salinities, and effects of previous environmental history

Berg, Florian; Andersson, Leif; Folkvord, Arild

Part of Marine Ecology Progress Series, p. 141-152, 2020

• DOI for Respiration rates of herring larvae at different salinities, and effects of previous environmental history

Ecological adaptation in Atlantic herring is associated with large shifts in allele frequencies at hundreds of loci

Han, Fan; Jamsandekar, Minal; Pettersson, Mats; Su, Leyi et al.

Part of eLIFE, 2020

• DOI for Ecological adaptation in Atlantic herring is associated with large shifts in allele frequencies at hundreds of loci
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Comparison of Otolith Microstructure of Herring Larvae and Sibling Adults Reared Under Identical Early Life Conditions

Tonheim, Susanne; Slotte, Aril; Andersson, Leif; Folkvord, Arild et al.

Part of Frontiers in Marine Science, 2020

• DOI for Comparison of Otolith Microstructure of Herring Larvae and Sibling Adults Reared Under Identical Early Life Conditions
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Avian Expression Patterns and Genomic Mapping Implicate Leptin in Digestion and TNF in Immunity, Suggesting That Their Interacting Adipokine Role Has Been Acquired Only in Mammals

Seroussi, Eyal; Knytl, Martin; Pitel, Frederique; Elleder, Daniel et al.

Part of International Journal of Molecular Sciences, 2019

• DOI for Avian Expression Patterns and Genomic Mapping Implicate Leptin in Digestion and TNF in Immunity, Suggesting That Their Interacting Adipokine Role Has Been Acquired Only in Mammals
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A comparison of the association between large haplotype blocks under selection and the presence/absence of inversions

Lamichhaney, Sangeet; Andersson, Leif

Part of Ecology and Evolution, p. 4888-4896, 2019

• DOI for A comparison of the association between large haplotype blocks under selection and the presence/absence of inversions
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Characterization of the endogenous retrovirus insertion in CYP19A1 associated with henny feathering in chicken

Li, Jingyi; Davis, Brian W.; Jern, Patric; Dorshorst, Ben J. et al.

Part of Mobile DNA, 2019

• DOI for Characterization of the endogenous retrovirus insertion in CYP19A1 associated with henny feathering in chicken
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Recurrent convergent evolution at amino acid residue 261 in fish rhodopsin

Hill, Jason; Enbody, Erik D.; Pettersson, Mats; Sprehn, Charlotte Grace et al.

Part of Proceedings of the National Academy of Sciences of the United States of America, p. 18473-18478, 2019

• DOI for Recurrent convergent evolution at amino acid residue 261 in fish rhodopsin
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A chromosome-level assembly of the Atlantic herring: detection of a supergene and other signals of selection

Pettersson, Mats; Rochus, Christina Marie; Han, Fan; Chen, Junfeng et al.

Part of Genome Research, p. 1919-1928, 2019

• DOI for A chromosome-level assembly of the Atlantic herring: detection of a supergene and other signals of selection
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Exploring a Pool-seq-only approach for gaining population genomic insights in nonmodel species

Kurland, Sara; Wheat, Christopher W.; Mancera, Maria de la Paz Celorio; Kutschera, Verena E. et al.

Part of Ecology and Evolution, p. 11448-11463, 2019

• DOI for Exploring a Pool-seq-only approach for gaining population genomic insights in nonmodel species
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Genetics of adaptation in modern chicken

Qanbari, Saber; Rubin, Carl-Johan; Maqbool, Khurram; Weigend, Steffen et al.

Part of PLOS Genetics, 2019

• DOI for Genetics of adaptation in modern chicken
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Identification and validation of genetic variants predictive of gait in standardbred horses

McCoy, Annette M.; Beeson, Samantha K.; Rubin, Carl-Johan; Andersson, Leif et al.

Part of PLOS Genetics, 2019

• DOI for Identification and validation of genetic variants predictive of gait in standardbred horses
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Glucose Tolerance and Plasma Non-Esterified Fatty Acid Levels in Chickens Selected for Low Body Weight, Red Junglefowl, and their Reciprocal Cross

Sutherland, Dez-Ann A. T.; Honaker, Christa F.; Gilbert, Elizabeth R.; Andersson, Leif et al.

Part of The Journal of Poultry Science, p. 245-252, 2019

• DOI for Glucose Tolerance and Plasma Non-Esterified Fatty Acid Levels in Chickens Selected for Low Body Weight, Red Junglefowl, and their Reciprocal Cross
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Genetic origin and salinity history influence the reproductive success of Atlantic herring

Berg, Florian; Slotte, Aril; Andersson, Leif; Folkvord, Arild

Part of Marine Ecology Progress Series, p. 81-94, 2019

• DOI for Genetic origin and salinity history influence the reproductive success of Atlantic herring
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A missense mutation in TYRP1 causes the chocolate plumage color in chicken and alters melanosome structure

Li, Jingyi; Bed'hom, Bertrand; Marthey, Sylvain; Valade, Mathieu et al.

Part of Pigment Cell & Melanoma Research, p. 381-390, 2019

• DOI for A missense mutation in TYRP1 causes the chocolate plumage color in chicken and alters melanosome structure

Regulatory changes in pterin and carotenoid genes underlie balanced color polymorphisms in the wall lizard

Andrade, Pedro; Pinho, Catarina; Perez i de lanuza, Guillem; Afonso, Sandra et al.

Part of Proceedings of the National Academy of Sciences of the United States of America, p. 5633-5642, 2019

• DOI for Regulatory changes in pterin and carotenoid genes underlie balanced color polymorphisms in the wall lizard

ZBED6 negatively regulates insulin production, neuronal differentiation, and cell aggregation in MIN6 cells

Wang, Xuan; Jiang, Lin; Wallerman, Ola; Younis, Shady et al.

Part of The FASEB Journal, p. 88-100, 2019

• DOI for ZBED6 negatively regulates insulin production, neuronal differentiation, and cell aggregation in MIN6 cells

Elevated proportions of deleterious genetic variation in domestic animals and plants

Makino, Takashi; Rubin, Carl-Johan; Carneiro, Miguel; Axelsson, Erik et al.

Part of Genome Biology and Evolution, p. 276-290, 2018

• DOI for Elevated proportions of deleterious genetic variation in domestic animals and plants
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Comparative omics and feeding manipulations in chicken indicate a shift of the endocrine role of visceral fat towards reproduction

Bornelöv, Susanne; Seroussi, Eyal; Yosefi, Sara; Benjamini, Sharon et al.

Part of BMC Genomics, 2018

• DOI for Comparative omics and feeding manipulations in chicken indicate a shift of the endocrine role of visceral fat towards reproduction
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Fisher's quantitative genetic model and the molecular genetics of multifactorial traits

Andersson, Leif

Part of Journal of Animal Breeding and Genetics, p. 391-392, 2018

• DOI for Fisher's quantitative genetic model and the molecular genetics of multifactorial traits

A genomic map of clinal variation across the European rabbit hybrid zone

Rafati, Nima; Blanco-Aguiar, Jose A.; Rubin, Carl-Johan; Sayyab, Shumaila et al.

Part of Molecular Ecology, p. 1457-1478, 2018

• DOI for A genomic map of clinal variation across the European rabbit hybrid zone

Genomic signatures of 60 years of bidirectional selection for 8-week body weight in chickens

Lillie, Mette; Sheng, Zheya; Honaker, Christa; Andersson, Leif et al.

Part of Poultry Science, p. 781-790, 2018

• DOI for Genomic signatures of 60 years of bidirectional selection for 8-week body weight in chickens
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Genetic factors have a major effect on growth, number of vertebrae and otolith shape in Atlantic herring (Clupea harengus)

Berg, Florian; Almeland, Oda W.; Skadal, Julie; Slotte, Aril et al.

Part of PLOS ONE, 2018

• DOI for Genetic factors have a major effect on growth, number of vertebrae and otolith shape in Atlantic herring (Clupea harengus)
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Rapid hybrid speciation in Darwin's finches

Lamichhaney, Sangeet; Han, Fan; Webster, Matthew Thomas; Andersson, Leif et al.

Part of Science, p. 224-228, 2018

• DOI for Rapid hybrid speciation in Darwin's finches

Growth patterns for three generations of an intercross between red junglefowl and chickens selected for low body weight

Sutherland, Dez-Ann Antoinette Therese; Honaker, Christa Ferst; Dorshorst, Ben; Andersson, Leif et al.

Part of Journal of Animal Breeding and Genetics, p. 300-310, 2018

• DOI for Growth patterns for three generations of an intercross between red junglefowl and chickens selected for low body weight

Changes in brain architecture are consistent with altered fear processing in domestic rabbits

Brusini, Irene; Carneiro, Miguel; Wang, Chunliang; Rubin, Carl-Johan et al.

Part of Proceedings of the National Academy of Sciences of the United States of America, p. 7380-7385, 2018

• DOI for Changes in brain architecture are consistent with altered fear processing in domestic rabbits

A potential regulatory region near the EDN3 gene may control both harness racing performance and coat color variation in horses

Fegraeus, Kim Jaederkvist; Velie, Brandon D.; Axelsson, Jeanette; Ang, Rachel et al.

Part of Physiological Reports, 2018

• DOI for A potential regulatory region near the EDN3 gene may control both harness racing performance and coat color variation in horses
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Asymmetries, heterosis, and phenotypic profiles of red junglefowl, White Plymouth Rocks, and F-1 and F-2 reciprocal crosses

Sutherland, D. A. T.; Honaker, C. F.; Dorshorst, B.; Andersson, Leif et al.

Part of Journal of Applied Genetics, p. 193-201, 2018

• DOI for Asymmetries, heterosis, and phenotypic profiles of red junglefowl, White Plymouth Rocks, and F-1 and F-2 reciprocal crosses

Multiple nuclear-replicating viruses require the stress-induced protein ZC3H11A for efficient growth

Younis, Shady; Kamel, Wael; Falkeborn, Tina; Wang, Hao et al.

Part of Proceedings of the National Academy of Sciences of the United States of America, 2018

• DOI for Multiple nuclear-replicating viruses require the stress-induced protein ZC3H11A for efficient growth

The ZBED6-IGF2 axis has a major effect on growth of skeletal muscle and internal organs in placental mammals

Younis, Shady; Schönke, Milena; Massart, Julie; Hjortebjerg, Rikke et al.

Part of Proceedings of the National Academy of Sciences of the United States of America, 2018

• DOI for The ZBED6-IGF2 axis has a major effect on growth of skeletal muscle and internal organs in placental mammals
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Association analysis of KIT, MITF, and PAX3 variants with white markings in Spanish horses

Negro, S.; Imsland, Freyja; Valera, M.; Molina, A. et al.

Part of Animal Genetics, p. 349-352, 2017

• DOI for Association analysis of KIT, MITF, and PAX3 variants with white markings in Spanish horses

Dwarfism and Altered Craniofacial Development in Rabbits Is Caused by a 12.1 kb Deletion at the HMGA2 Locus

Carneiro, Miguel; Hu, Dou; Archer, John; Feng, Chungang et al.

Part of Genetics, p. 955-965, 2017

• DOI for Dwarfism and Altered Craniofacial Development in Rabbits Is Caused by a 12.1 kb Deletion at the HMGA2 Locus

Gene flow, ancient polymorphism, and ecological adaptation shape the genomic landscape of divergence among Darwin's finches

Han, Fan; Lamichhaney, Sangeet; Grant, B Rosemary; Grant, Peter R et al.

Part of Genome Research, p. 1004-1015, 2017

• DOI for Gene flow, ancient polymorphism, and ecological adaptation shape the genomic landscape of divergence among Darwin's finches
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Mapping of leptin and its syntenic genes to chicken chromosome 1p

Seroussi, Eyal; Pitel, Frederique; Leroux, Sophie; Morisson, Mireille et al.

Part of BMC Genetics, 2017

• DOI for Mapping of leptin and its syntenic genes to chicken chromosome 1p
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To pace or not to pace: a pilot study of four- and five-gaited Icelandic horses homozygous for the DMRT3 'Gait Keeper' mutation

Fegraeus, K. Jaderkvist; Hirschberg, I.; Arnason, T.; Andersson, Leif et al.

Part of Animal Genetics, p. 694-697, 2017

• DOI for To pace or not to pace: a pilot study of four- and five-gaited Icelandic horses homozygous for the DMRT3 'Gait Keeper' mutation

The evolution of Sex-linked barring alleles in chickens involves both regulatory and coding changes in CDKN2A

Thalmann, Doreen Schwochow; Ring, Henrik; Sundström, Elisabeth; Cao, Xiaofang et al.

Part of PLOS Genetics, 2017

• DOI for The evolution of Sex-linked barring alleles in chickens involves both regulatory and coding changes in CDKN2A
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Correspondence on Lovell et al.: identification of chicken genes previously assumed to be evolutionarily lost

Bornelöv, Susanne; Seroussi, Eyal; Yosefi, Sara; Pendavis, Ken et al.

Part of Genome Biology, 2017

• DOI for Correspondence on Lovell et al.: identification of chicken genes previously assumed to be evolutionarily lost
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Moderate nucleotide diversity in the Atlantic herring is associated with a low mutation rate

Feng, Chungang; Pettersson, Mats; Lamichhaney, Sangeet; Rubin, Carl-Johan et al.

Part of eLIFE, 2017

• DOI for Moderate nucleotide diversity in the Atlantic herring is associated with a low mutation rate
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The evolutionary history of the DMRT3 'Gait keeper' haplotype

Staiger, E. A.; Almén, M. S.; Promerova, M.; Brooks, S. et al.

Part of Animal Genetics, p. 551-559, 2017

• DOI for The evolutionary history of the DMRT3 'Gait keeper' haplotype

Lack of significant associations with early career performance suggest no link between the DMRT3 "Gait Keeper" mutation and precocity in Coldblooded trotters

Fegraeus, Kim Jäderkvist; Lawrence, Chameli; Petäjistö, Katrine; Johansson, Maria K. et al.

Part of PLOS ONE, 2017

• DOI for Lack of significant associations with early career performance suggest no link between the DMRT3 "Gait Keeper" mutation and precocity in Coldblooded trotters
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Genetic Basis for Red Coloration in Birds

Hill, G. E.; Lopes, R. J.; Johnson, J. D.; Toomey, M. B. et al.

Part of Integrative and Comparative Biology, 2017

Y Chromosome Uncovers the Recent Oriental Origin of Modern Stallions

Wallner, Barbara; Palmieri, Nicola; Vogl, Claus; Rigler, Doris et al.

Part of Current Biology, p. 2029-2035, 2017

• DOI for Y Chromosome Uncovers the Recent Oriental Origin of Modern Stallions

Parallel adaptive evolution of geographically distant herring populations on both sides of the North Atlantic Ocean

Lamichhaney, Sangeet; Fuentes-Pardo, Angela P.; Rafati, Nima; Ryman, Nils et al.

Part of Proceedings of the National Academy of Sciences of the United States of America, 2017

• DOI for Parallel adaptive evolution of geographically distant herring populations on both sides of the North Atlantic Ocean

The origin of ambling horses

Wutke, Saskia; Andersson, Leif; Benecke, Norbert; Sandoval-Castellanos, Edson et al.

Part of Current Biology, 2016

• DOI for The origin of ambling horses

Adaptive radiation of Darwin's finches revisited using whole genome sequencing

Almén, Markus Sällman; Lamichhaney, Sangeet; Berglund, Jonas; Grant, B. Rosemary et al.

Part of Bioessays, p. 14-20, 2016

• DOI for Adaptive radiation of Darwin's finches revisited using whole genome sequencing

A domestication related mutation in the thyroid stimulating hormone receptor gene (TSHR) modulates photoperiodic response and reproduction in chickens

Karlsson, Anna-Carin; Fallahshahroudi, Amir; Johnsen, Hanna; Hagenblad, Jenny et al.

Part of General and Comparative Endocrinology, p. 69-78, 2016

• DOI for A domestication related mutation in the thyroid stimulating hormone receptor gene (TSHR) modulates photoperiodic response and reproduction in chickens

Genetic Basis for Red Coloration in Birds

Lopes, Ricardo J.; Johnson, James D.; Toomey, Matthew B.; Ferreira, Mafalda S. et al.

Part of Current Biology, p. 1427-1434, 2016

• DOI for Genetic Basis for Red Coloration in Birds

Structural genomic changes underlie alternative reproductive strategies in the ruff (Philomachus pugnax)

Lamichhaney, Sangeet; Fan, Guangyi; Widemo, Fredrik; Gunnarsson, Ulrika et al.

Part of Nature Genetics, p. 84-88, 2016

• DOI for Structural genomic changes underlie alternative reproductive strategies in the ruff (Philomachus pugnax)
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Large Deletions at the SHOX Locus in the Pseudoautosomal Region Are Associated with Skeletal Atavism in Shetland Ponies

Rafati, Nima; Andersson, Lisa S.; Mikko, Sofia; Feng, Chungang et al.

Part of G3, p. 2213-2223, 2016

• DOI for Large Deletions at the SHOX Locus in the Pseudoautosomal Region Are Associated with Skeletal Atavism in Shetland Ponies
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A novel MC1R allele for black coat colour reveals the Polynesian ancestry and hybridization patterns of Hawaiian feral pigs

Linderholm, Anna; Spencer, Daisy; Battista, Vincent; Frantz, Laurent et al.

Part of Royal Society Open Science, 2016

• DOI for A novel MC1R allele for black coat colour reveals the Polynesian ancestry and hybridization patterns of Hawaiian feral pigs
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The domesticated brain: genetics of brain mass and brain structure in an avian species

Henriksen, R.; Johnsson, M.; Andersson, Leif; Jensen, P. et al.

Part of Scientific Reports, 2016

• DOI for The domesticated brain: genetics of brain mass and brain structure in an avian species
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Regulatory mutations in TBX3 disrupt asymmetric hair pigmentation underlying Dun camouflage colour in horses

Imsland, Freyja; McGowan, Kelly; Rubin, Carl-Johan; Henegar, Corneliu et al.

Part of Nature Genetics, p. 152-158, 2016

• DOI for Regulatory mutations in TBX3 disrupt asymmetric hair pigmentation underlying Dun camouflage colour in horses

Duplication of chicken defensin7 gene generated by gene conversion and homologous recombination

Lee, Mi Ok; Bornelöv, Susanne; Andersson, Leif; Lamont, Susan J. et al.

Part of Proceedings of the National Academy of Sciences of the United States of America, p. 13815-13820, 2016

• DOI for Duplication of chicken defensin7 gene generated by gene conversion and homologous recombination

The genetic basis for ecological adaptation of the Atlantic herring revealed by genome sequencing

Martínez Barrio, Álvaro; Lamichhaney, Sangeet; Fan, Guangyi; Rafati, Nima et al.

Part of eLIFE, 2016

• DOI for The genetic basis for ecological adaptation of the Atlantic herring revealed by genome sequencing
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Quantitative Trait Locus and Genetical Genomics Analysis Identifies Putatively Causal Genes for Fecundity and Brooding in the Chicken

Johnsson, Martin; Jonsson, Kenneth B.; Andersson, Leif; Jensen, Per et al.

Part of G3, p. 311-319, 2016

• DOI for Quantitative Trait Locus and Genetical Genomics Analysis Identifies Putatively Causal Genes for Fecundity and Brooding in the Chicken
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Knock-down of ZBED6 in insulin-producing cells promotes N-cadherin junctions between beta-cells and neural crest stem cells in vitro

Wang, Xuan; Xie, Beichen; Qi, Yu; Wallerman, Ola et al.

Part of Scientific Reports, 2016

• DOI for Knock-down of ZBED6 in insulin-producing cells promotes N-cadherin junctions between beta-cells and neural crest stem cells in vitro
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Identification of the Long-Sought Leptin in Chicken and Duck: Expression Pattern of the Highly GC-Rich Avian leptin Fits an Autocrine/Paracrine Rather Than Endocrine Function

Seroussi, Eyal; Cinnamon, Yuval; Yosefi, Sara; Genin, Olga et al.

Part of Endocrinology, p. 737-751, 2016

• DOI for Identification of the Long-Sought Leptin in Chicken and Duck: Expression Pattern of the Highly GC-Rich Avian leptin Fits an Autocrine/Paracrine Rather Than Endocrine Function

A beak size locus in Darwin’s finches facilitated character displacement during a drought

Lamichhaney, Sangeet; Han, Fan; Berglund, Jonas; Wang, Chao et al.

Part of Science, p. 470-474, 2016

• DOI for A beak size locus in Darwin’s finches facilitated character displacement during a drought

ZBED6 negatively regulates insulin content, glucose-stimulated insulin secretion, neuronal differentiation and cell aggregation in MIN6 cells

Wang, Xuan; Jiang, L.; Wallerman, Ola; Yu, Qian et al.

Part of Diabetologia, 2016

Amelanism in the corn snake is associated with the insertion of an LTR-retrotransposon in the OCA2 gene

Saenko, Suzanne V.; Lamichhaney, Sangeet; Barrio, Alvaro Martinez; Rafati, Nima et al.

Part of Scientific Reports, 2015

• DOI for Amelanism in the corn snake is associated with the insertion of an LTR-retrotransposon in the OCA2 gene
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The Effect of a Mutation in the Thyroid Stimulating Hormone Receptor (TSHR) on Development, Behaviour and TH Levels in Domesticated Chickens

Karlsson, Anna-Carin; Svemer, Frida; Eriksson, Jonas; Darras, Veerle M. et al.

Part of PLOS ONE, 2015

• DOI for The Effect of a Mutation in the Thyroid Stimulating Hormone Receptor (TSHR) on Development, Behaviour and TH Levels in Domesticated Chickens
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Evolution of Darwin's finches and their beaks revealed by genome sequencing

Lamichhaney, Sangeet; Berglund, Jonas; Almen, Markus Sällman; Maqbool, Khurram et al.

Part of Nature, 2015

• DOI for Evolution of Darwin's finches and their beaks revealed by genome sequencing

A Genomic Duplication is Associated with Ectopic Eomesodermin Expression in the Embryonic Chicken Comb and Two Duplex-comb Phenotypes

Dorshorst, Ben; Harun-Or-Rashid, Mohammad; Bagherpoor, Alireza Jian; Rubin, Carl-Johan et al.

Part of PLOS Genetics, 2015

• DOI for A Genomic Duplication is Associated with Ectopic Eomesodermin Expression in the Embryonic Chicken Comb and Two Duplex-comb Phenotypes
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Transcriptional modulator ZBED6 affects cell cycle and growth of human colorectal cancer cells

Ali, Muhammad Akhtar; Younis, Shady; Wallerman, Ola; Gupta, Rajesh et al.

Part of Proceedings of the National Academy of Sciences of the United States of America, p. 7743-7748, 2015

• DOI for Transcriptional modulator ZBED6 affects cell cycle and growth of human colorectal cancer cells

Bovine NK-lysin: Copy number variation and functional diversification

Chen, Junfeng; Huddleston, John; Buckley, Reuben M.; Malig, Maika et al.

Part of Proceedings of the National Academy of Sciences of the United States of America, 2015

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Genetic Regulation of Bone Metabolism in the Chicken: Similarities and Differences to Mammalian Systems

Johnsson, Martin; Jonsson, Kenneth B.; Andersson, Leif; Jensen, Per et al.

Part of PLOS Genetics, 2015

• DOI for Genetic Regulation of Bone Metabolism in the Chicken: Similarities and Differences to Mammalian Systems
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Mitogenomic analysis of a 50-generation chicken pedigree reveals a rapid rate of mitochondrial evolution and evidence for paternal mtDNA inheritance

Alexander, Michelle; Ho, Simon Y. W.; Molak, Martyna; Barnett, Ross et al.

Part of Biology Letters, 2015

• DOI for Mitogenomic analysis of a 50-generation chicken pedigree reveals a rapid rate of mitochondrial evolution and evidence for paternal mtDNA inheritance
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Dominant Red Coat Color in Holstein Cattle Is Associated with a Missense Mutation in the Coatomer Protein Complex, Subunit Alpha (COPA) Gene

Dorshorst, Ben; Henegar, Corneliu; Liao, Xiaoping; Almén, Markus Sällman et al.

Part of PLOS ONE, 2015

• DOI for Dominant Red Coat Color in Holstein Cattle Is Associated with a Missense Mutation in the Coatomer Protein Complex, Subunit Alpha (COPA) Gene
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Coordinated international action to accelerate genome-to-phenome with FAANG, the Functional Annotation of Animal Genomes project

Andersson, Leif; Archibald, Alan L.; Bottema, Cynthia D.; Brauning, Rudiger et al.

Part of Genome Biology, 2015

• DOI for Coordinated international action to accelerate genome-to-phenome with FAANG, the Functional Annotation of Animal Genomes project
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Candidate genes underlying heritable differences in reproductive seasonality between wild and domestic rabbits

Carneiro, Miguel; Piorno, Vicente; Rubin, Carl-Johan; Alves, Joel M. et al.

Part of Animal Genetics, p. 418-425, 2015

• DOI for Candidate genes underlying heritable differences in reproductive seasonality between wild and domestic rabbits

The importance of the DMRT3 'Gait keeper' mutation on riding traits and gaits in Standardbred and Icelandic horses

Jäderkvist, Kim; Holm, Niina; Imsland, Freyja; Arnason, Thorvaldur et al.

Part of Livestock Science, p. 33-39, 2015

• DOI for The importance of the DMRT3 'Gait keeper' mutation on riding traits and gaits in Standardbred and Icelandic horses

Microphthalmia-associated transcription factor mutations are associated with white-spotted coat color in swamp buffalo

Yusnizar, Y.; Wilbe, Maria; Herlino, A. O.; Sumantri, C. et al.

Part of Animal Genetics, p. 676-682, 2015

• DOI for Microphthalmia-associated transcription factor mutations are associated with white-spotted coat color in swamp buffalo
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When pigs fly, UCP1 makes heat

Jastroch, Martin; Andersson, Leif

Part of MOLECULAR METABOLISM, p. 359-362, 2015

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The DMRT3 'Gait keeper' mutation affects performance of Nordic and Standardbred trotters

Jäderkvist, K.; Andersson, L. S.; Johansson, A. M.; Árnason, T. et al.

Part of Journal of Animal Science, p. 4279-4286, 2014

• DOI for The DMRT3 'Gait keeper' mutation affects performance of Nordic and Standardbred trotters

The role of pleiotropy and linkage in genes affecting a sexual ornament and bone allocation in the chicken

Johnsson, M.; Rubin, Carl-Johan; Hoglund, A.; Sahlqvist, Anna-Stina et al.

Part of Molecular Ecology, p. 2275-2286, 2014

• DOI for The role of pleiotropy and linkage in genes affecting a sexual ornament and bone allocation in the chicken

A cis-Regulatory Mutation of PDSS2 Causes Silky-Feather in Chickens

Feng, Chungang; Gao, Yu; Dorshorst, Ben; Song, Chi et al.

Part of PLOS Genetics, 2014

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Rabbit genome analysis reveals a polygenic basis for phenotypic change during domestication

Carneiro, Miguel; Rubin, Carl-Johan; Di Palma, Federica; Albert, Frank W. et al.

Part of Science, p. 1074-1079, 2014

• DOI for Rabbit genome analysis reveals a polygenic basis for phenotypic change during domestication

Constitutive activation of the ERK pathway in melanoma and skin melanocytes in Grey horses

Jiang, Lin; Campagne, Cécile; Sundström, Elisabeth; Sousa, Pedro et al.

Part of BMC Cancer, p. 857, 2014

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Establishing the validity of domestication genes using DNA from ancient chickens

Flink, Linus Girdland; Allen, Richard; Barnett, Ross; Malmström, Helena et al.

Part of Proceedings of the National Academy of Sciences of the United States of America, p. 6184-6189, 2014

• DOI for Establishing the validity of domestication genes using DNA from ancient chickens

ZBED6 Modulates the Transcription of Myogenic Genes in Mouse Myoblast Cells

Jiang, Lin; Wallerman, Ola; Younis, Shady; Rubin, Carl-Johan et al.

Part of PLOS ONE, 2014

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Establishment and characterization of a primary and a metastatic melanoma cell line from Grey horses

Seltenhammer, Monika H.; Sundström, Elisabeth; Meisslitzer-Ruppitsch, Claudia; Cejka, Petra et al.

Part of In vitro Cellular & Developmental Biology-Animal, p. 56-65, 2014

• DOI for Establishment and characterization of a primary and a metastatic melanoma cell line from Grey horses

Worldwide frequency distribution of the 'Gait keeper' mutation in the DMRT3 gene

Promerová, Marta; Andersson, L. S.; Juras, R.; Penedo, M. C. T. et al.

Part of Animal Genetics, p. 274-282, 2014

• DOI for Worldwide frequency distribution of the 'Gait keeper' mutation in the DMRT3 gene

Current perspectives and the future of domestication studies

Larson, Greger; Piperno, Dolores R.; Allaby, Robin G.; Purugganan, Michael D. et al.

Part of Proceedings of the National Academy of Sciences of the United States of America, p. 6139-6146, 2014

• DOI for Current perspectives and the future of domestication studies

Transcription factor ZBED6 affects gene expression, proliferation, and cell death in pancreatic beta cells

Wang, Xuan; Jiang, Lin; Wallerman, Ola; Engström, Ulla et al.

Part of Proceedings of the National Academy of Sciences of the United States of America, p. 15997-16002, 2013

• DOI for Transcription factor ZBED6 affects gene expression, proliferation, and cell death in pancreatic beta cells

The expression of carnitine palmitoyl-CoA transferase-1B is influenced by a cis-acting eQTL in two chicken lines selected for high and low body weight

Ka, Sojeong; Markljung, Ellen; Ring, Henrik; Albert, Frank W et al.

Part of Physiological Genomics, p. 367-376, 2013

• DOI for The expression of carnitine palmitoyl-CoA transferase-1B is influenced by a cis-acting eQTL in two chicken lines selected for high and low body weight

ZBED Evolution: Repeated Utilization of DNA Transposons as Regulators of Diverse Host Functions

Hayward, Alexander; Ghazal, Awaisa; Andersson, Göran; Andersson, Leif et al.

Part of PLOS ONE, 2013

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Molecular consequences of animal breeding

Andersson, Leif

Part of Current Opinion in Genetics and Development, p. 295-301, 2013

• DOI for Molecular consequences of animal breeding

Complex Inheritance of Melanoma and Pigmentation of Coat and Skin in Grey Horses

Curik, Ino; Druml, Thomas; Seltenhammer, Monika; Sundström, Elisabeth et al.

Part of PLOS Genetics, 2013

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Evolutionary genomics: Detecting selection

Barsh, Gregory S.; Andersson, Leif

Part of Nature, p. 325-326, 2013

• DOI for Evolutionary genomics: Detecting selection

Recalibrating Equus evolution using the genome sequence of an early Middle Pleistocene horse

Orlando, Ludovic; Ginolhac, Aurelien; Zhang, Guojie; Froese, Duane et al.

Part of Nature, p. 74-+, 2013

• DOI for Recalibrating Equus evolution using the genome sequence of an early Middle Pleistocene horse

Mapping QTL affecting a systemic sclerosis-like disorder in a cross between UCD-200 and red jungle fowl chickens

Ek, Weronica; Sahlqvist, Anna-Stina; Crooks, Lucy; Sgonc, Roswitha et al.

Part of Developmental and Comparative Immunology, p. 352-359, 2012

• DOI for Mapping QTL affecting a systemic sclerosis-like disorder in a cross between UCD-200 and red jungle fowl chickens

Copy number expansion of the STX17 duplication in melanoma tissue from Grey horses

Sundström, Elisabeth; Imsland, Freyja; Mikko, Sofia; Wade, Claire et al.

Part of BMC Genomics, p. 365, 2012

• DOI for Copy number expansion of the STX17 duplication in melanoma tissue from Grey horses
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Heritable genome-wide variation of gene expression and promoter methylation between wild and domesticated chickens

Natt, Daniel; Rubin, Carl-Johan; Wright, Dominic; Johnsson, Martin et al.

Part of BMC Genomics, p. 59, 2012

• DOI for Heritable genome-wide variation of gene expression and promoter methylation between wild and domesticated chickens

Copy number expansion of the STX17 duplication in melanoma tissue from Grey horses

Sundström, Elisabeth; Imsland, Freyja; Mikko, Sofia; Wade, Claire et al.

Part of BMC Genomics, p. 365, 2012

• DOI for Copy number expansion of the STX17 duplication in melanoma tissue from Grey horses

Strong signatures of selection in the domestic pig genome

Rubin, Carl-Johan; Megens, H. -J; Barrio, Alvaro Martinez; Maqbool, K. et al.

Part of Proceedings of the National Academy of Sciences of the United States of America, p. 19529-19536, 2012

• DOI for Strong signatures of selection in the domestic pig genome

Sonic Hedgehog-Signalling Patterns the Developing Chicken Comb as Revealed by Exploration of the Pea-comb Mutation

Boije, Henrik; Harun-Or-Rashid, Mohammad; Lee, Yu-Jen; Imsland, Freyja et al.

Part of PLOS ONE, 2012

• DOI for Sonic Hedgehog-Signalling Patterns the Developing Chicken Comb as Revealed by Exploration of the Pea-comb Mutation
• Download full text (pdf) of Sonic Hedgehog-Signalling Patterns the Developing Chicken Comb as Revealed by Exploration of the Pea-comb Mutation

Onset of Sexual Maturity in Female Chickens is Genetically Linked to Loci Associated with Fecundity and a Sexual Ornament

Wright, D.; Rubin, Carl-Johan; Schutz, K.; Kerje, Susanne et al.

Part of Reproduction in domestic animals, p. 31-36, 2012

• DOI for Onset of Sexual Maturity in Female Chickens is Genetically Linked to Loci Associated with Fecundity and a Sexual Ornament

Population-scale sequencing reveals genetic differentiation due to local adaptation in Atlantic herring

Lamichhaney, Sangeet; Barrio, Alvaro Martinez; Rafati, Nima; Sundström, Görel et al.

Part of Proceedings of the National Academy of Sciences of the United States of America, p. 19345-19350, 2012

• DOI for Population-scale sequencing reveals genetic differentiation due to local adaptation in Atlantic herring

The Rose-comb Mutation in Chickens Constitutes a Structural Rearrangement Causing Both Altered Comb Morphology and Defective Sperm Motility

Imsland, Freyja; Feng, Chungang; Boije, Henrik; Bed'hom, Bertrand et al.

Part of PLOS Genetics, 2012

• DOI for The Rose-comb Mutation in Chickens Constitutes a Structural Rearrangement Causing Both Altered Comb Morphology and Defective Sperm Motility
• Download full text (pdf) of The Rose-comb Mutation in Chickens Constitutes a Structural Rearrangement Causing Both Altered Comb Morphology and Defective Sperm Motility

The Crest Phenotype in Chicken Is Associated with Ectopic Expression of HOXC8 in Cranial Skin

Wang, Yanqiang; Gao, Yu; Imsland, Freyja; Gu, Xiaorong et al.

Part of PLOS ONE, 2012

• DOI for The Crest Phenotype in Chicken Is Associated with Ectopic Expression of HOXC8 in Cranial Skin
• Download full text (pdf) of The Crest Phenotype in Chicken Is Associated with Ectopic Expression of HOXC8 in Cranial Skin

A Sexual Ornament in Chickens Is Affected by Pleiotropic Alleles at HAO1 and BMP2, Selected during Domestication

Johnsson, Martin; Gustafson, Ida; Rubin, Carl-Johan; Sahlqvist, Anna-Stina et al.

Part of PLOS Genetics, 2012

• DOI for A Sexual Ornament in Chickens Is Affected by Pleiotropic Alleles at HAO1 and BMP2, Selected during Domestication
• Download full text (pdf) of A Sexual Ornament in Chickens Is Affected by Pleiotropic Alleles at HAO1 and BMP2, Selected during Domestication

Rethinking dog domestication by integrating genetics, archeology, and biogeography

Larson, Greger; Karlsson, Elinor K; Perri, Angela; Webster, Matthew T et al.

Part of Proceedings of the National Academy of Sciences of the United States of America, p. 8878-8883, 2012

• DOI for Rethinking dog domestication by integrating genetics, archeology, and biogeography

Mutations in DMRT3 affect locomotion in horses and spinal circuit function in mice

Andersson, Lisa S.; Larhammar, Martin; Memic, Fatima; Wootz, Hanna et al.

Part of Nature, p. 642-646, 2012

• DOI for Mutations in DMRT3 affect locomotion in horses and spinal circuit function in mice

Identification of a melanocyte-specific, microphthalmia-associated transcription factor-dependent regulatory element in the intronic duplication causing hair greying and melanoma in horses

Sundström, Elisabeth; Komisarczuk, Anna Z.; Jiang, Lin; Golovko, Anna et al.

Part of Pigment Cell & Melanoma Research, p. 28-36, 2012

• DOI for Identification of a melanocyte-specific, microphthalmia-associated transcription factor-dependent regulatory element in the intronic duplication causing hair greying and melanoma in horses

Modelling of genetic interactions improves prediction of hybrid patterns: a case study in domestic fowl

Alvarez-Castro, José M; Le Rouzic, Arnaud; Andersson, Leif; Siegel, Paul B et al.

Part of Genetical Research, p. 255-266, 2012

• DOI for Modelling of genetic interactions improves prediction of hybrid patterns: a case study in domestic fowl

Fine mapping and replication of QTL in outbred chicken advanced intercross lines

Besnier, Francois; Wahlberg, Per; Rönnegård, Lars; Ek, Weronica et al.

Part of Genetics Selection Evolution, p. 3, 2011

• DOI for Fine mapping and replication of QTL in outbred chicken advanced intercross lines

Characterisation of five candidate genes within the ETEC F4ab/ac candidate region in pigs

Jacobsen, Mette; Cirera, Susanna; Joller, David; Esteso, Gloria et al.

Part of BMC Research Notes, p. 225, 2011

• DOI for Characterisation of five candidate genes within the ETEC F4ab/ac candidate region in pigs

The Dark brown plumage color in chickens is caused by an 8.3-kb deletion upstream of SOX10

Gunnarsson, Ulrika; Kerje, Susanne; Bed'hom, Bertrand; Sahlqvist, Anna-Stina et al.

Part of Pigment Cell & Melanoma Research, p. 268-274, 2011

• DOI for The Dark brown plumage color in chickens is caused by an 8.3-kb deletion upstream of SOX10

A Novel Unstable Duplication Upstream of HAS2 Predisposes to a Breed-Defining Skin Phenotype and a Periodic Fever Syndrome in Chinese Shar-Pei Dogs

Olsson, Mia; Meadows, Jennifer R. S.; Truve, Katarina; Pielberg, Gerli Rosengren et al.

Part of PLoS Genetics, 2011

• DOI for A Novel Unstable Duplication Upstream of HAS2 Predisposes to a Breed-Defining Skin Phenotype and a Periodic Fever Syndrome in Chinese Shar-Pei Dogs

Differentially expressed genes in hypothalamus in relation to genomic regions under selection in two chicken lines resulting from divergent selection for high or low body weight

Ka, Sojeong; Albert, Frank W.; Denbow, D. Michael; Pääbo, Svante et al.

Part of Neurogenetics, p. 211-221, 2011

• DOI for Differentially expressed genes in hypothalamus in relation to genomic regions under selection in two chicken lines resulting from divergent selection for high or low body weight

Are dogs genetically special?

Hedrick, P. W.; Andersson, Leif

Part of Heredity, p. 712-713, 2011

• DOI for Are dogs genetically special?

The receptor locus for Escherichia coli F4ab/F4ac in the pig maps distal to the MUC4-LMLN region

Rampoldi, Antonio; Jacobsen, Mette J.; Bertschinger, Hans U.; Joller, David et al.

Part of Mammalian Genome, p. 122-129, 2011

• DOI for The receptor locus for Escherichia coli F4ab/F4ac in the pig maps distal to the MUC4-LMLN region

A Complex Genomic Rearrangement Involving the Endothelin 3 Locus Causes Dermal Hyperpigmentation in the Chicken

Dorshorst, Ben; Molin, Anna-Maja; Rubin, Carl-Johan; Johansson, Anna M. et al.

Part of PLoS Genetics, 2011

• DOI for A Complex Genomic Rearrangement Involving the Endothelin 3 Locus Causes Dermal Hyperpigmentation in the Chicken

Mutations in or near the Transmembrane Domain Alter PMEL Amyloid Formation from Functional to Pathogenic

Watt, Brenda; Tenza, Danièle; Lemmon, Mark A.; Kerje, Susanne et al.

Part of PLoS Genetics, 2011

• DOI for Mutations in or near the Transmembrane Domain Alter PMEL Amyloid Formation from Functional to Pathogenic

Inactivation of Pmel Alters Melanosome Shape But Has Only a Subtle Effect on Visible Pigmentation

Hellström, Anders R.; Watt, Brenda; Fard, Shahrzad Shirazi; Tenza, Daniele et al.

Part of PLoS Genetics, 2011

• DOI for Inactivation of Pmel Alters Melanosome Shape But Has Only a Subtle Effect on Visible Pigmentation

Whole genome resequencing reveals loci under selection during chicken domestication

Rubin, Carl-Johan; Zody, Michael C.; Eriksson, Jonas; Meadows, Jennifer et al.

Part of Nature, p. 587-591, 2010

• DOI for Whole genome resequencing reveals loci under selection during chicken domestication

Sex-linked barring in chickens is controlled by the CDKN2A/B tumour suppressor locus

Hellström, Anders R.; Sundström, Elisabeth; Gunnarsson, Ulrika; Bed'hom, Bertrand et al.

Part of Pigment Cell and Melanoma Research, p. 521-530, 2010

• DOI for Sex-linked barring in chickens is controlled by the CDKN2A/B tumour suppressor locus

Genotype at the PMEL17 locus affects social and explorative behaviour in chickens

Karlsson, A. -C; Kerje, Susanne; Andersson, Leif; Jensen, P.

Part of British Poultry Science, p. 170-177, 2010

• DOI for Genotype at the PMEL17 locus affects social and explorative behaviour in chickens

Genetic analysis of metabolic traits in an intercross between body weight-selected chicken lines

Ek, Weronica; Strömstedt, Lina; Wahlberg, Per; Siegel, Paul et al.

Part of Physiological Genomics, p. 20-22, 2010

• DOI for Genetic analysis of metabolic traits in an intercross between body weight-selected chicken lines

The genetic architecture of domestication in the chicken: effects of pleiotropy and linkage

Wright, Dominic; Rubin, Carl-Johan; Martinez Barrio, Alvaro; Schütz, K. et al.

Part of Molecular Ecology, p. 5140-5156, 2010

• DOI for The genetic architecture of domestication in the chicken: effects of pleiotropy and linkage

ZBED6: the birth of a new transcription factor in the common ancestor of placental mammals

Andersson, Leif; Andersson, Göran; Hjälm, Göran; Jiang, Lin et al.

Part of Transcription, p. 144-148, 2010

• DOI for ZBED6: the birth of a new transcription factor in the common ancestor of placental mammals

Refined candidate region specified by haplotype sharing for Escherichia coli F4ab/F4ac susceptibility alleles in pigs

Jacobsen, M; Kracht, S S; Esteso, G; Cirera, S et al.

Part of Animal Genetics, p. 21-25, 2010

• DOI for Refined candidate region specified by haplotype sharing for Escherichia coli F4ab/F4ac susceptibility alleles in pigs

Patterns of East Asian pig domestication, migration, and turnover revealed by modern and ancient DNA.

Larson, Greger; Liu, Ranran; Zhao, Xingbo; Yuan, Jing et al.

Part of Proceedings of the National Academy of Sciences of the United States of America, p. 7686-7691, 2010

• DOI for Patterns of East Asian pig domestication, migration, and turnover revealed by modern and ancient DNA.

Proviral integrations and expression of endogenous Avian leucosis virus during long term selection for high and low body weight in two chicken lines

Ka, Sojeong; Kerje, Susanne; Bomold, Lina; Liljegren, Ulrika et al.

Part of Retrovirology, p. 68, 2009

• DOI for Proviral integrations and expression of endogenous Avian leucosis virus during long term selection for high and low body weight in two chicken lines

Genetic analysis of an F2 intercross between two chicken lines divergently selected for body-weight

Wahlberg, Per; Carlborg, Örjan; Foglio, Mario; Tordoir, Xavier et al.

Part of BMC Genomics, p. 248, 2009

• DOI for Genetic analysis of an F2 intercross between two chicken lines divergently selected for body-weight

Extremely different behaviours in high and low body weight lines of chicken are associated with differential expression of genes involved in neuronal plasticity

Ka, Sojeong; Lindberg, J.; Strömstedt, L.; Fitzsimmons, C. et al.

Part of Journal of neuroendocrinology, p. 208-216, 2009

• DOI for Extremely different behaviours in high and low body weight lines of chicken are associated with differential expression of genes involved in neuronal plasticity

Copy number variation in intron 1 of SOX5 causes the Pea-comb phenotype in chickens

Wright, Dominic; Boije, Henrik; Meadows, Jennifer; Bed'hom, Bertrand et al.

Part of PLoS Genetics, 2009

• DOI for Copy number variation in intron 1 of SOX5 causes the Pea-comb phenotype in chickens

A high-density SNP-based linkage map of the chicken genome reveals sequence features correlated with recombination rate

Groenen, Martien; Wahlberg, Per; Foglio, Mario; Cheng, Hans H. et al.

Part of Genome Research, p. 510-519, 2009

• DOI for A high-density SNP-based linkage map of the chicken genome reveals sequence features correlated with recombination rate

ZBED6, a novel transcription factor derived from a domesticated DNA transposon regulates IGF2 expression and muscle growth

Markljung, Ellen; Jiang, Lin; Jaffe, Jacob D.; Mikkelsen, Tarjei S. et al.

Part of PLoS biology, 2009

• DOI for ZBED6, a novel transcription factor derived from a domesticated DNA transposon regulates IGF2 expression and muscle growth

Genome Sequence, Comparative Analysis, and Population Genetics of the Domestic Horse

Wade, C. M.; Giulotto, E.; Sigurdsson, Snaevar; Zoli, M. et al.

Part of Science, p. 865-867, 2009

• DOI for Genome Sequence, Comparative Analysis, and Population Genetics of the Domestic Horse

Sensory ataxic neuropathy in golden retriever dogs is caused by a deletion in the mitochondrial tRNA^Tyr gene

Baranowska, Izabella; Jäderlund, Karin Hultin; Nennesmo, Inger; Holmqvist, Erik et al.

Part of PLoS Genetics, 2009

• DOI for Sensory ataxic neuropathy in golden retriever dogs is caused by a deletion in the mitochondrial tRNA^Tyr gene

Genetic architecture of tameness in a rat model of animal domestication

Albert, Frank W.; Carlborg, Örjan; Plyusnina, Irina; Besnier, Francois et al.

Part of Genetics, p. 541-554, 2009

• DOI for Genetic architecture of tameness in a rat model of animal domestication

Refined localization of the Escherichia coli F4ab/F4ac receptor locus on pig chromosome 13

Joller, D; Jørgensen, C B; Bertschinger, H U; Python, P et al.

Part of Animal Genetics, p. 749-752, 2009

• DOI for Refined localization of the Escherichia coli F4ab/F4ac receptor locus on pig chromosome 13

Domestication-related genetic effects on social behavior in chickens - effects of genotype at a major growth quantitative trait locus

Wirén, A; Gunnarsson, U; Andersson, Leif; Jensen, P

Part of Poultry Science, p. 1162-1166, 2009

• DOI for Domestication-related genetic effects on social behavior in chickens - effects of genotype at a major growth quantitative trait locus

Genome-wide association analysis in domestic animals: a powerful approach for genetic dissection of trait loci

Andersson, Leif

Part of Genetica, p. 341-349, 2009

• DOI for Genome-wide association analysis in domestic animals: a powerful approach for genetic dissection of trait loci

Studying phenotypic evolution in domestic animals: a walk in the footsteps of Charles Darwin.

Andersson, Leif

Part of Cold Spring Harbor Symposia on Quantitative Biology, p. 319-25, 2009

• DOI for Studying phenotypic evolution in domestic animals: a walk in the footsteps of Charles Darwin.

Contrasting mode of evolution at a coat color locus in wild and domestic pigs

Fang, Meiying; Larson, Greger; Ribeiro, Helena Soares; Li, Ning et al.

Part of PLoS Genetics, 2009

• DOI for Contrasting mode of evolution at a coat color locus in wild and domestic pigs

Den vita hästens gåta löst

Andersson, Leif; Sundström, Elisabeth

Part of Forskning & Framsteg, p. 40-43, 2008

Genome-wide identification of quantitative trait loci in a cross between Hampshire and Landrace II: meat quality traits

Markljung, Ellen; Braunschweig, Martin H.; Jørgensen, Claus B.; Fredholm, Merete et al.

Part of BMC Genetics, p. 22, 2008

• DOI for Genome-wide identification of quantitative trait loci in a cross between Hampshire and Landrace II: meat quality traits

Identification of the yellow skin gene reveals a hybrid origin of the domestic chicken

Eriksson, Jonas; Larson, Greger; Gunnarsson, Ulrika; Bed'hom, Bertrand et al.

Part of PLoS Genetics, 2008

• DOI for Identification of the yellow skin gene reveals a hybrid origin of the domestic chicken

A cis-acting regulatory mutation causes premature hair graying and susceptibility to melanoma in the horse

Pielberg, Gerli Rosengren; Golovko, Anna; Sundström, Elisabeth; Curik, Ino et al.

Part of Nature Genetics, p. 1004-1009, 2008

• DOI for A cis-acting regulatory mutation causes premature hair graying and susceptibility to melanoma in the horse

The genetic architecture of a female sexual ornament

Wright, Dominic; Kerje, Susanne; Brändström, Helena; Schütz, Karin et al.

Part of Evolution, p. 86-98, 2008

• DOI for The genetic architecture of a female sexual ornament

Differential gene expression in femoral bone from red junglefowl and domestic chicken, differing for bone phenotypic traits

Rubin, Carl-Johan; Lindberg, Johan; Fitzsimmons, Carolyn; Savolainen, Peter et al.

Part of BMC Genomics, p. 208, 2007

• DOI for Differential gene expression in femoral bone from red junglefowl and domestic chicken, differing for bone phenotypic traits

Duplication of FGF3, FGF4, FGF19 and ORAOV1 causes hair ridge and predisposition to dermoid sinus in Ridgeback dogs

Salmon Hillbertz, Nicolette H. C.; Isaksson, Magnus; Karlsson, Elinor K.; Hellmén, Eva et al.

Part of Nature Genetics, p. 1318-1320, 2007

• DOI for Duplication of FGF3, FGF4, FGF19 and ORAOV1 causes hair ridge and predisposition to dermoid sinus in Ridgeback dogs

Quantitative Trait Loci for BMD and Bone Strength in an Intercross Between Domestic and Wildtype Chickens

Rubin, Carl-Johan; Brändström, Helena; Wright, Dominic; Kerje, Susanne et al.

Part of Journal of Bone and Mineral Research, p. 375-384, 2007

• DOI for Quantitative Trait Loci for BMD and Bone Strength in an Intercross Between Domestic and Wildtype Chickens

A high-resolution linkage map for the Z chromosome in chicken reveals hot spots for recombination

Wahlberg, Per; Strömstedt, Lina; Tordoir, Xavier; Foglio, Mario et al.

Part of Cytogenetic and Genome Research, p. 22-29, 2007

• DOI for A high-resolution linkage map for the Z chromosome in chicken reveals hot spots for recombination

Efficient mapping of mendelian traits in dogs through genome-wide association

Karlsson, Elinor K.; Baranowska, Izabella; Wade, Claire M.; Salmon Hillbertz, Nicolette H. C. et al.

Part of Nature Genetics, p. 1321-1328, 2007

• DOI for Efficient mapping of mendelian traits in dogs through genome-wide association

Gene copy number detection in animal studies

Pielberg, Gerli; Andersson, Leif

Part of Methods in Molecular Biology, p. 147-156, 2007

• DOI for Gene copy number detection in animal studies

Plumage color and feather pecking--behavioral differences associated with PMEL17 genotypes in chicken (Gallus gallus)

Nätt, Daniel; Kerje, Susanne; Andersson, Leif; Jensen, Per

Part of Behavior Genetics, p. 399-407, 2007

• DOI for Plumage color and feather pecking--behavioral differences associated with PMEL17 genotypes in chicken (Gallus gallus)

Mutations in SLC45A2 Cause Plumage Color Variation in Chicken and Japanese Quail

Gunnarsson, Ulrika; Hellström, Anders R.; Tixier-Boichard, Michele; Minvielle, Francis et al.

Part of Genetics, p. 867-877, 2007

• DOI for Mutations in SLC45A2 Cause Plumage Color Variation in Chicken and Japanese Quail

A missense mutation in PMEL17 is associated with the Silver coat color in the horse

Brunberg, Emma; Andersson, Leif; Cothran, Gus; Sandberg, Kaj et al.

Part of BMC Genetics, p. 46, 2006

• DOI for A missense mutation in PMEL17 is associated with the Silver coat color in the horse

Refined localization of the FAT1 quantitative trait locus on pig chromosome 4 by marker-assisted backcrossing.

Berg, Frida; Stern, Susanne; Andersson, Kjell; Andersson, Leif et al.

Part of BMC Genetics, p. 17, 2006

Identification of Antibodies against HAI-1 and Integrin {alpha}6{beta}4 as

Hallikas, Outi K; Aaltonen, Johanna A; von Koskull, Harriet; Lindberg, Lars-Axel et al.

Part of Journal of Histochemistry and Cytochemistry, p. 754-752, 2006

• DOI for Identification of Antibodies against HAI-1 and Integrin {alpha}6{beta}4 as

Genome-wide identification of quantitative trait loci in a cross between Hampshire and Landrace I: carcass traits

Karlskov-Mortensen, Peter; Bruun, Camilla S.; von Seth, Gertrud; Jørgensen, Claus B. et al.

Part of Animal Genetics, p. 156-162, 2006

• DOI for Genome-wide identification of quantitative trait loci in a cross between Hampshire and Landrace I: carcass traits

AMPK-mediated AS160 phosphorylation in skeletal muscle is dependent on AMPK catalytic and regulatory subunits.

Treebak, Jonas T; Glund, Stephan; Deshmukh, Atul; Klein, Ditte K et al.

Part of Diabetes, p. 2051-2058, 2006

• DOI for AMPK-mediated AS160 phosphorylation in skeletal muscle is dependent on AMPK catalytic and regulatory subunits.

Mitochondrial haplotypes of European wild boars with 2n=36 are closely related to those of European domestic pigs with 2n=38

Fang, M.; Berg, Frida; Ducos, A.; Andersson, Leif

Part of Animal Genetics, p. 459-464, 2006

• DOI for Mitochondrial haplotypes of European wild boars with 2n=36 are closely related to those of European domestic pigs with 2n=38

Quantitative trait loci analysis of egg and meat production traits in a red junglefowl x White Leghorn cross

Wright, Dominic; Kerje, Susanne; Lundström, K.; Babol, J. et al.

Part of Animal Genetics, p. 529-534, 2006

• DOI for Quantitative trait loci analysis of egg and meat production traits in a red junglefowl x White Leghorn cross

Epistasis and the release of genetic variation during long-term selection.

Carlborg, Örjan; Jacobsson, Lina; Ahgren, Per; Siegel, Paul et al.

Part of Nat Genet, p. 418-20, 2006

Refined localization of the FAT1 quantitative trait locus on pig chromosome 4 by marker-assisted backcrossing

Berg, Frida; Stern, Susanne; Andersson, Kjell; Andersson, Leif et al.

Part of BMC Genet, p. 17, 2006

The uncoupling protein 1 gene (UCP1) is disrupted in the pig lineage: A genetic explanation for poor thermoregulation in piglets

Berg, Frida; Gustafson, Ulla; Andersson, Leif

Part of PLoS Genetics, p. 1178-1181, 2006

• DOI for The uncoupling protein 1 gene (UCP1) is disrupted in the pig lineage: A genetic explanation for poor thermoregulation in piglets

QTL analysis of body composition and metabolic traits in an intercross between chicken lines divergently selected for growth.

Park, Hee-Bok; Jacobsson, Lina; Wahlberg, Per; Siegel, Paul B et al.

Part of Physiol Genomics, p. 216-23, 2006

Avian models with spontaneous autoimmune diseases.

Wick, Georg; Andersson, Leif; Hala, Karel; Gershwin, M Eric et al.

Part of Adv Immunol, p. 71-117, 2006

Opposite transcriptional regulation in skeletal muscle of AMP-activated protein kinase gamma3 R225Q transgenic versus knock-out mice.

Nilsson, Elisabeth C; Long, Yun Chau; Martinsson, Sofia; Glund, Stephan et al.

Part of J Biol Chem, p. 7244-52, 2006

Evaluation of the porcine melanocortin 4 receptor (MC4R) gene as a positional candidate for a fatness QTL in a cross between Landrace and Hampshire.

Bruun, C S; Jörgensen, C B; Nielsen, V H; Andersson, L et al.

Part of Anim Genet, p. 359-62, 2006

The mutation causing the black-and-tan pigmentation phenotype of Mangalitza pigs maps to the porcine ASIP locus but does not affect its coding sequence.

Drögemüller, Cord; Giese, Alexander; Martins-Wess, Flávia; Wiedemann, Sabine et al.

Part of Mamm Genome, p. 58-66, 2006

Progress from chicken genetics to the chicken genome.

Siegel, P B; Dodgson, J B; Andersson, Leif

Part of Poult Sci, p. 2050-60, 2006

Mitochondrial diversity in European and Chinese pigs is consistent with population expansions that occurred prior to domestication.

Fang, Meiying; Andersson, Leif

Part of Proc Biol Sci, p. 1803-10, 2006

Feather pecking in chickens is genetically related to behavioural and developmental traits

Jensen, Per; Keeling, L.; Schutz, K.; Andersson, L. et al.

Part of Physiology and Behavior, p. 52-60, 2005

• DOI for Feather pecking in chickens is genetically related to behavioural and developmental traits

Polymorphism at the porcine Dominant white/KIT locus influence coat colour and peripheral blood cell measures

Johansson, A; Pielberg, Gerli; Andersson, Leif; Edfors-Lilja, I

Part of Animal Genetics, p. 288-296, 2005

• DOI for Polymorphism at the porcine Dominant white/KIT locus influence coat colour and peripheral blood cell measures

5'-AMP-activated protein kinase regulates skeletal muscle glycogen content and ergogenics

Barnes, Brian R; Glund, Stephan; Long, Yun Chau; Hjälm, Göran et al.

Part of The FASEB Journal, p. 773-779, 2005

• DOI for 5'-AMP-activated protein kinase regulates skeletal muscle glycogen content and ergogenics

Confirmation of QTL on porcine chromosomes 1 and 8 influencing leukocyte numbers, haematological parameters and leukocyte function.

Wattrang, E; Almqvist, M; Johansson, A; Fossum, C et al.

Part of Anim Genet, p. 337-45, 2005

Changes in Exercise-Induced Gene Expression in 5'-AMP-Activated Protein Kinase {gamma}3-Null and {gamma}3 R225Q Transgenic Mice.

Barnes, Brian R; Long, Yun Chau; Steiler, Tatiana L; Leng, Ying et al.

Part of Diabetes, p. 3484-9, 2005

Comparative linkage mapping of the Grey coat colour gene in horses.

Pielberg, G; Mikko, S; Sandberg, K; Andersson, L

Part of Anim Genet, p. 390-5, 2005

Effect of exercise on proglycogen and macroglycogen content in skeletal muscles of pigs with the Rendement Napole mutation.

Essen-Gustavsson, Birgitta; Jensen-Waern, Marianne; Jonasson, Robert; Andersson, Leif

Part of Am J Vet Res, p. 1197-201, 2005

ESTs from brain and testis of White Leghorn and red junglefowl: annotation, bioinformatic classification of unknown transcripts and analysis of expression levels.

Savolainen, P; Fitzsimmons, C; Arvestad, L; Andersson, L et al.

Part of Cytogenet Genome Res, p. 79-87, 2005

Role of AMP-activated protein kinase in the coordinated expression of genes controlling glucose and lipid metabolism in mouse white skeletal muscle.

Long, Y C; Barnes, B R; Mahlapuu, M; Steiler, T L et al.

Part of Diabetologia, p. 2354-64, 2005

Worldwide phylogeography of wild boar reveals multiple centers of pig domestication.

Larson, Greger; Dobney, Keith; Albarella, Umberto; Fang, Meiying et al.

Part of Science, p. 1618-21, 2005

Many QTLs with minor additive effects are associated with a large difference in growth between two selection lines in chickens.

Jacobsson, Lina; Park, Hee-Bok; Wahlberg, Per; Fredriksson, Robert et al.

Part of Genet Res, p. 115-25, 2005

Genetic analysis of anal atresia in pigs: evidence for segregation at two main loci.

Cassini, Pamela; Montironi, Alberto; Botti, Sara; Hori, Tetsuo et al.

Part of Mamm Genome, p. 164-70, 2005

Expression analysis of growth and energy regulation-associated genes in two divergent chicken strains.

Ka, Sojeong; Fitzsimmons, Carolyn; Jacobsson, Lina; Savolainen, Peter et al.

Part of Ann N Y Acad Sci, p. 357-9, 2005

Genomics meets ethology: a new route to understanding domestication, behavior, and sustainability in animal breeding.

Jensen, Per; Andersson, Leif

Part of Ambio, p. 320-4, 2005

Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution

Hillier, Ladeana W; Miller, Webb; Birney, Ewan; Warren, Wesley et al.

Part of Nature, p. 695-716, 2004

A genetic variation map for chicken with 2.8 million single-nucleotide polymorphisms.

Wong, Gane Ka-Shu; Liu, Bin; Wang, Jun; Zhang, Yong et al.

Part of Nature, p. 717-22, 2004

Assignment of fourteen microsatellite markers to the chicken linkage map

Jacobsson, Lina; Park, Hee-Bok; Wahlberg, Per; Jiang, Siwen et al.

Part of Poultry Science, p. 1825-1831, 2004

The 5'-AMP-activated protein kinase gamma3 isoform has a key role in carbohydrate and lipid metabolism in glycolytic skeletal muscle

Barnes, Brian R; Marklund, Stefan; Steiler, Tatiana L; Walter, Mark et al.

Part of Journal of Biological Chemistry, p. 38441-38447, 2004

Chicken genomics: Feather-pecking and victim pigmentation

Keeling, L; Andersson, L; Schütz, EK; Kerje, S et al.

Part of Nature, p. 645-6, 2004

The Dominant white, Dun and Smoky color variants in chicken are associated with insertion/deletion polymorphisms in the PMEL17 gene.

Kerje, Susanne; Sharma, Preety; Gunnarsson, Ulrika; Kim, Hyun et al.

Part of Genetics, p. 1507-18, 2004

High-resolution comparative mapping of pig Chromosome 4, emphasizing the FAT1 region.

Moller, Maria; Berg, Frida; Riquet, Juliette; Pomp, Daniel et al.

Part of Mamm Genome, p. 717-31, 2004

Expression profiling of the gamma-subunit isoforms of AMP-activated protein kinase suggests a major role for gamma3 in white skeletal muscle.

Mahlapuu, Margit; Johansson, Carina; Lindgren, Kerstin; Hjälm, Göran et al.

Part of Am J Physiol Endocrinol Metab, 2004

Detection of sequence polymorphisms in red junglefowl and White Leghorn ESTs.

Fitzsimmons, C J; Savolainen, P; Amini, B; Hjälm, G et al.

Part of Anim Genet, p. 391-6, 2004

Domestic-animal genomics: deciphering the genetics of complex traits.

Andersson, Leif; Georges, Michel

Part of Nat Rev Genet, p. 202-12, 2004

IGF2 antisense transcript expression in porcine postnatal muscle is affected by a quantitative trait nucleotide in intron 3.

Braunschweig, Martin H; Van Laere, Anne-Sophie; Buys, Nadine; Andersson, Leif et al.

Part of Genomics, p. 1021-9, 2004

The IGF2-intron3-G3072A substitution explains a major imprinted QTL effect on backfat thickness in a meishan x european white pig intercross.

Jungerius, Bart J; van Laere, Anne-Sophie; Te Pas, Marinus F W; van Oost, Bernard A et al.

Part of Genet Res, p. 95-101, 2004

The twofold difference in adult size between the red junglefowl and White Leghorn chickens is largely explained by a limited number of QTLs

Kerje, Susanne; Carlborg, Örjan; Jacobsson, Lina; Schütz, Karin et al.

Part of Animal Genetics, p. 264-274, 2003

A Global Search Reveals Epistatic Interaction Between QTL for Early Growth in the Chicken

Carlborg, Örjan; Kerje, Susanne; Schütz, Karin; Jacobsson, Lina et al.

Part of Genome Research, p. 413-421, 2003

Melanocortin 1-receptor (MC1R) mutations are associated with plumage colour in chicken

Kerje, Susanne; Lind, Jenny; Schütz, Karin; Jensen, Per et al.

Part of Animal Genetics, p. 241-248, 2003

Molecular characterization and mutational screening of the PRKAG3 gene in the horse

Park, Hee-Bok; Marklund, Stefan; Jeon, Jin-Tae; Mickelson, James R. et al.

Part of Cytogenetic and Genome Research, p. 211-216, 2003

Linkage and comparative mapping of the locus controlling susceptibility towards E. COLI F4ab/ac diarrhoea in pigs.

Jörgensen, C B; Cirera, S; Anderson, S I; Archibald, A L et al.

Part of Cytogenet Genome Res, p. 157-62, 2003

Full pedigree quantitative trait locus analysis in commercial pigs using variance components.

de Koning, D J; Pong-Wong, R; Varona, L; Evans, G J et al.

Part of J Anim Sci, p. 2155-63, 2003

Positional identification of structural and regulatory quantitative trait nucleotides in domestic animal species.

Georges, M; Andersson, L

Part of Cold Spring Harb Symp Quant Biol, p. 179-87, 2003

QTL analysis of a red junglefowl x White Leghorn intercross reveals trade-off in resource allocation between behavior and production traits

Schutz, Karin; Kerje, Susanne; Carlborg, Örjan; Jacobsson, Lina et al.

Part of Behavior Genetics, p. 423-433, 2002

• DOI for QTL analysis of a red junglefowl x White Leghorn intercross reveals trade-off in resource allocation between behavior and production traits

Melanocortin-4 receptor(MC4R) genotypes have no major effect on fatness in a Large White x Wild boar intercross

Park, Hee-Bok; Carlborg, Örjan; Marklund, Stefan; Andersson, Leif

Part of Animal Genetics, p. 155-157, 2002

[Studies of relationship between the melanocortin-3 receptor gene and body weight in chicken for high and low weight lines' intercross]

Jiang, Si-Wen; Jacobsson, Lina; Kerje, Susanne; Andersson, Leif et al.

Part of Yi Chuan Xue Bao, p. 322-325, 2002

A large duplication associated with dominant white color in pigs originated

Giuffra, Elisabetta; Törnsten, Anna; Marklund, Stefan; Bongcam-Rudloff, Erik et al.

Part of Mamm Genome, p. 569-77, 2002

Comparative analysis of a BAC contig of the porcine RN region and the human: implications for the cloning of trait loci.

Jeon, J T; Amarger, V; Rogel-Gaillard, C; Robic, A et al.

Part of Genomics, p. 297-303, 2001

Expression of different phenotypes in cell lines from canine mammary spindle-cell tumours and osteosarcomas indicating a pluripotent mammary stem cell origin

Hellmen, Eva; Moller, Maria; Blankenstein, Marinus A.; Andersson, Leif et al.

Part of Breast Cancer Research and Treatment, p. 197-210, 2000

• DOI for Expression of different phenotypes in cell lines from canine mammary spindle-cell tumours and osteosarcomas indicating a pluripotent mammary stem cell origin

How Fish Population Genomics Can Promote Sustainable Fisheries: A Road Map

Andersson, Leif; Bekkevold, Dorte; Berg, Florian; Farrell, Edward D. et al.

Part of Annual Review of Animal Biosciences, p. 1-20, 2024

• DOI for How Fish Population Genomics Can Promote Sustainable Fisheries: A Road Map
• Download full text (pdf) of How Fish Population Genomics Can Promote Sustainable Fisheries: A Road Map

The role of G protein-coupled receptors and their ligands in animal domestication

Kleinau, Gunnar; Chini, Bice; Andersson, Leif; Scheerer, Patrick

Part of Animal Genetics, p. 893-906, 2024

• DOI for The role of G protein-coupled receptors and their ligands in animal domestication
• Download full text (pdf) of The role of G protein-coupled receptors and their ligands in animal domestication

White horses - non-coding sequences drive premature hair greying and predisposition to melanoma

Andersson, Leif

Part of Upsala Journal of Medical Sciences, 2024

• DOI for White horses - non-coding sequences drive premature hair greying and predisposition to melanoma
• Download full text (pdf) of White horses - non-coding sequences drive premature hair greying and predisposition to melanoma

Ecological adaptation in cod and herring and possible consequences of future climate change in the Baltic Sea

Andersson, Leif; André, Carl; Johannesson, Kerstin; Pettersson, Mats

Part of Frontiers in Marine Science, 2023

• DOI for Ecological adaptation in cod and herring and possible consequences of future climate change in the Baltic Sea
• Download full text (pdf) of Ecological adaptation in cod and herring and possible consequences of future climate change in the Baltic Sea

Mutations in Domestic Animals Disrupting or Creating Pigmentation Patterns

Andersson, Leif

Part of Frontiers in Ecology and Evolution, 2020

• DOI for Mutations in Domestic Animals Disrupting or Creating Pigmentation Patterns
• Download full text (pdf) of Mutations in Domestic Animals Disrupting or Creating Pigmentation Patterns

Domestic animals as models for biomedical research

Andersson, Leif

Part of Upsala Journal of Medical Sciences, p. 1-11, 2016

• DOI for Domestic animals as models for biomedical research

How selective sweeps in domestic animals provide new insight into biological mechanisms

Andersson, Leif

Part of Journal of Internal Medicine, p. 1-14, 2012

• DOI for How selective sweeps in domestic animals provide new insight into biological mechanisms

LUPA: A European initiative taking advantage of the canine genome architecture for unravelling complex disorders in both human and dogs

Lequarre, Anne-Sophie; Andersson, Leif; Andre, Catherine; Fredholm, Merete et al.

Part of The Veterinary Journal, p. 155-159, 2011

• DOI for LUPA: A European initiative taking advantage of the canine genome architecture for unravelling complex disorders in both human and dogs

The role of ZBED6 in transcriptional regulation studied by transcriptome  analysis after RNAi in mouse myoblasts

Jiang, Lin; Rubin, Carl-Johan; Gilbert, Elizabeth; Sundström, Elisabeth et al.

Domestic Animals: A Treasure Trove for Comparative Genomics

Andersson, Leif

Part of Comparative Genomics, p. 341-362, Taylor & Francis Group, 2007

Farm animals

Andersson, Leif

Part of Encyclopedia of Genetics, Genomics, Proteomics and Bioinformatics, p. 1171-1183, John Wiley & Sons Ltd. Chichester, 2005

Automatic rat brain segmentation from MRI using statistical shape models and random forest

Bendazzoli, Simone; Brusini, Irene; Damberg, Peter; Smedby, Örjan et al.

Part of MEDICAL IMAGING 2019, 2019

• DOI for Automatic rat brain segmentation from MRI using statistical shape models and random forest

Positional identification of structural and regulatory quantative trait nucleotides in livestock

Georges, M; Andersson, Leif

Part of Cold Spring Harbor symposia on quantitative biology., p. 179-187, 2004

Melanocortin Receptor Variants with Phenotypic Effects in Horse, Pig and Chicken

Andersson, Leif

Part of The melanocortin system, p. 313-318, 2003

• DOI for Melanocortin Receptor Variants with Phenotypic Effects in Horse, Pig and Chicken

Multiple viruses rely on the stress-induced protein ZC3H11A for efficient replication

Younis, Shady; Kamel, Wael; Wang, Hao; Yu, Di et al.

2017

Inactivation of the Silver gene alters the shape of eumelanosomes but has only a subtle effect on pigmentation

Hellström, Anders R; Watt, Brenda; Shirazi Fard, Shahrzad; Tenza, Daniéle et al.

The Plumage Colour Dark brown in Chicken is caused by an 8 kb Deletion Upstream of SOX10

Gunnarsson, Ulrika; Kerje, Susanne; Bed’hom, Bertrand; Sahlqvist, Anna-Stina et al.

The Dominant white, Dun and Smoky colour variants in chicken are associated with insertion/deletion polymorphisms in the PMEL17 gene

Kerje, Susanne; Sharma, Pretty; Okimoto, Ron; Gunnarsson, Ulrika et al.

QTL analysis of body composition and metabolic traits in an intercross between chicken lines divergently selected for growth

Park, Hee-Bok; Jacobsson, Lina; Wahlberg, Per; Siegel, Paul B. et al.

Candidate genes for several bone QTL in chicken revealed by gene expression analysis

Rubin, Carl-Johan; Wright, Dominic; Albert, Frank; Jonsson, Kenneth et al.

A high proportion of bone trait QTL coincides in two separate intercrosses between wild-type and domestic chicken – suggestive evidence for domestication effects

Rubin, Carl-Johan; Wright, Dominic; Sahlqvist, Anna-Stina; Kerje, Susanne et al.

Further characterization of the FAT1 locus on pig chromosome 4 – evidence for two quantitative trait loci in the FAT1 region

Berg, Frida; Bourneuf, Emmanuelle; Marklund, Stefan; Andersson, Leif

Changes in myotube development and mitochondrial activity in mouse C2C12 cells after ZBED6 silencing is largely due to increased IGF2 expression

Younis, Shady; Wang, Xuan; Naboulsi, Rakan; Larsson, Mårten et al.

Loss-of-affinity mutations and new interaction motifs underlie a dynamic evolution of the p53/MDM2 interaction in teleosts

Mihalic, Filip; Arcila, Dahiana; Pettersson, Mats; Farkhondehkish, Pouria et al.

A frameshift mutation in COMTD1 specifically dilutes pheomelanin pigmentation in chicken

Eriksson, Jonas; Hellström, Anders; Rubin, Carl-Johan; Wang, Chao et al.