Biosafety

Information about infectious agents, genetic modifications, containment measures, risk assessments, permits and legal requirements

Biologiska risker

Biological risks can be infectious substances, genetically modified microorganisms (GMM), blood & tissue, research animals, invasive species, or waste thereof, which can have a detrimental impact on human health or the environment at large.

When working with infectious agents and genetically modified microorganisms (GMM) there legal requirements in the provisions ”smittrisk” and "Innesluten användning av genetiskt modifierade mikroorganismer", which specify the containment measures required for work with infectious agents and GMM in different risk classes. For example, when gloves and lab coat is required and when the sign ”Biological Hazard” must be placed on the door to the lab.

Warningsign for Biological Hazard docx, 359 kB.

Apart from these general safety instructions, it is important that all those who participate in the work preform a risk assessment so that all the individual risks which may occur during the project can be identified, and safety measures implemented. The risk assessment should be kept in the laboratory, readily available to everyone, including government agencies during inspections. Some government agencies include a risk assessment form in the report form, if not here is a general risk assessment form for biorisks.

General risk assessment form

Risk assessment form specifically for biological risks docx, 681 kB.

A part of the risk assessment is to write instructions for handling an infections spill. Download these general instructions, adapt them to the risks in your laboratory, print them, and keep them in the groups’ spill-kit together with personal protective equipment and warning sign for biological spill.

Genneral instructions for a spill-kit docx, 15 kB.

Barricade sign docx, 123 kB.

According the provisions governing work with infectious agents (Smittrisk AFS 2023:10, 11 kap), human samples should in general be handled at containment level-2, but exactly which containment measures that are necessary can vary. For human samples with higher risk, e.g. COVID-19 patient samples, it could be prudent with additional containment measures. Propagation of SARS-CoV-2 samples should be handled at containment level-3. Se information from The Public Health Agency of Sweden for details.

There is always a risk of infection when working with tissue, bodily fluids, or pure infectious agents, especially so during aerosol formation, and work with needles and scalpels. Vaccination can be a good complement to the regular protective measures taken. It is however important to remember that vaccination does not have 100% efficacy.

The general guideline is that all those how work with human tissue or bodily fluids should be vaccinated against Hepatitis A & B. The need for vaccination is however always determined by the employee and closest supervisor through a risk assessment.

The following aspects should be included in the risk assessment:

  • The infectious substance
  • The type of work
  • The health status of the employee
  • The efficacy of the vaccine
  • The side effects of the vaccine

If the risk assessment indicates that vaccination is suitable, then send the risk assessment to the prefect/equivalent, how in turn books vaccination according to the institutions routines.

The employer pays for the vaccination, not the employee.

In case of an accident, it is important to have a written routine, which dictates what to do in different situations; e.g. how to handle contact with blood or infectious agents. If you suspect a laboratory related infection, contact your supervisor and if needed the hospitals infection ward 018-611 56 08. Furthermore, the employer is required to document when exposure to infectious substances in risk class 3 or 4 has been ascertained in connection to incidents, accidents or other undesirable events. See infection risk regulation AFS2023:10, 11 kap, 8§ for details.

Information on what to do in case of contact with blood pdf, 5 MB.

 

Work involving human pathogens and the contained use of genetically modified microorganisms (GMMs) is primarily regulated by the Swedish Work Environment Authority and must be notified or authorized before use begins. The processing time at the Swedish Work Environment Authority varies between 0 and 90 days depending on the type of notification. Contact the university’s biosafety coordinator for assistance with these notifications and permits.

Minor updates and changes to existing notifications concerning work with GMMs and pathogens are submitted via the head of department to the university’s biosafety coordinator during the month of April each year. What constitutes a minor update or change is defined in Section 18 of the regulation on the contained use of genetically modified microorganisms, AFS 2023:13, Chapter 9 (see the section on the right).

Contained use of other genetically modified organisms (GMOs), such as plants or laboratory animals, is regulated by other authorities; see information from the Swedish Gene Technology Advisory Board on the right. For questions regarding GMOs, please contact the university’s biosafety coordinator.

Animal by-products¹ (often abbreviated ABP) are materials of animal origin that are not food and that have not yet been processed or treated in a way that would classify them as derived products. In research activities, this includes, for example, proteins, certain antibodies², cell cultures, blood, plasma, and serum of animal origin. It also includes other tissues as well as whole or parts of dead animals. It does not include living animals.

Several authorities are responsible for ensuring that those handling animal by-products and derived products comply with Swedish and EU legislation. The use of animal by-products in research requires a permit from the Swedish Board of Agriculture (Jordbruksverket). The purpose includes preventing the spread of disease and ensuring traceability, which entails requirements for record-keeping.

Uppsala University holds a permit from the Swedish Board of Agriculture for the import and use of animal by-products for research and teaching. To make use of this permit, complete form3 below and email them to the biosafety coordinator before each import. The user will then receive a time-limited copy and the permit number, which suppliers may require before dispatching the order. Please note, however, that the user and the head of department remain responsible for ensuring that transport, operations, and waste management are carried out in accordance with applicable legislation. Furthermore, by means of this application, the user and the head of department assume “operational responsibility” (“driftsansvar”) as defined in EU Regulation 142/2011.

A number of conditions are associated with the permit and must be complied with by the user, for example:

  • The carrier must be approved to transport animal by-products.
  • A requirement to keep records in accordance with Section 1, Chapter 1 of Annex VI to Regulation (EU) No 142/2011, including material covered by Chapter 3, Section 1 of the Swedish Board of Agriculture’s regulations (SJVFS 2026:2). The records must be well compiled and easily presented to the competent authority (the Swedish Board of Agriculture) upon inspection.
  • A requirement that the material be transferred directly to the permit holder’s facility.
  • A prohibition against the product coming into contact with animals, other than those specified in the permit.
  • A prohibition against any subsequent use of the products for purposes other than those stated in the application.
  • An obligation to:
    • handle the material in a manner that is safe from an infection control perspective and in accordance with good laboratory practice;
    • after use, dispose of the products safely or return them to the place of origin.
  • For all types of import, an original commercial document³ issued by the sender must accompany the transport. The purpose of the commercial document is, among other things, to ensure traceability and to provide you as the recipient with certification of the contents of the consignment. Commercial documents and copies must be retained for two years. This applies to both national and international transports. A copy of the commercial document must be emailed to henrik.gradstedt@uu.se.

¹ Regulated by Regulation (EC) No 1069/2009 and the Swedish Board of Agriculture's regulation SJVFS 2011:21.
² Affinity-purified antibodies are not considered animal by-products.
³ Form for requesting a copy of the general permit for import and use of certain biological samples for research and teaching from the Swedish Board of Agriculture. docx, 23 kB.

To support institutions working with materials that may pose a biological hazard, Uppsala University has established the University’s Biorisk Committee in accordance with a decision by the Vice-Chancellor (UFV 2018/2180). The Committee consists of experts from relevant fields of expertise. Researchers, research group leaders, biosafety officers, and heads of department are encouraged to contact the Biorisk Committee with questions relating to biological risks, such as the handling of infectious agents, genetically modified organisms, invasive species, and matters concerning regulatory or definitional boundaries.

Members of the Biorisk Committee:

  • Magnus Essand, Professor at the Department of Immunology, Genetics and Pathology
  • Henrik Gradstedt (secretary, contact-person), Biosafety coordinator at the Buildings Division
  • Joakim Holmdahl, Centrumchef CFVUU
  • Josef Järhult, Professor at the Department of Medical Sciences
  • Peter Lindblad, Professor vid institutionen för kemi - Ångström
  • Anna Maria Näslund, Arbetsmiljöingenjör vid enheten för miljö och fysisk arbetsmiljö
  • Joëlle Rüegg, Professor at the Department of Organismal Biology
  • Stefan Schwartz, Professor at the Department of Medical Biochemistry and Microbiology
  • Mikael Sellin, Docent at the Department of Medical Biochemistry and Microbiology
  • Staffan Svärd (Chairman), Professor at the Department of Cell and Molecular Biology

Riktlinje för bioriskkommittén vid Uppsala universitet 2018pdf, 32 kB.

Beslut om Bioriskkommitte och ledamöter 20250218

At departments/equivalents that handle materials that may pose a biological hazard (e.g. infectious agents and genetically modified organisms), the head of department/equivalent shall appoint at least one biosafety officer.

The overall purpose of the biosafety officer role is to support the head of department/equivalent in the department's/equivalent's work with materials that may pose a biological hazard. The role of biosafety officer generally corresponds to what is aslo internationally known as a Biosafety Officer (BSO), however, the overall responsibility for work with materials that may pose a biological hazard still lies with the head of department/equivalent.

Rector's decision on the introduction of a biosafety officer pdf, 912 kB.

Job description biosafety officer docx, 64 kB.

Delegation from the head of department/equivalent to the biosafety officer docx, 81 kB.

Inform henrik.gradstedt@uu.se when you have appointed a new Biosafety Officer.

Bilder från biosäkerhetskurs

For those who do not have the experience or are not acquainted with the Swedish laws and regulations governing work with infectious substances or GMM, the course “Working with Biorisks: Infectious Substances and Genetically Modified Microorganisms” is held several times each semester, 09:00-16:45 at BMC C6:109a

The course is free of charge for those who work at Uppsala University (2.000:- for external participants), and is primarily aimed at bachelor/master students, Ph.D. students, post-docs, laboratory assistants, and new group leaders. During the course we discuss the organization of Uppsala University, Swedish laws and ordinances, work with infectious substances, waste management, incidents and accidents, practical risk assessments, containment and clean-up of a simulated biological spill, how to handle sharps, and biosecurity. The course is held in English, and comes with complementary “fika” and lunch.

For Uppsala University Ph.D. students the course can often yield ”Ph.D. points”, ask your course administrator if this is the case at your institution. The course is not aimed at students in basic education as it does not yield credits ”högskolepoäng”

Sign-up closes the day before the course date, or when fully booked.

If this course date is under-booked (minimum 4 participants, maximum 10) it will be cancelled and you will be offered another date.

Follow this link to the course dates.

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