Publikationer

An intronic copy number variation in Syntaxin 17 determines speed of greying and melanoma incidence in Grey horses

Rubin, Carl-Johan; Hodge, McKaela; Naboulsi, Rakan; Beckman, Madeleine et al.

Ingår i Nature Communications, 2024

• DOI för An intronic copy number variation in Syntaxin 17 determines speed of greying and melanoma incidence in Grey horses
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Complex genetic architecture of the chicken Growth1 QTL region

Ou, Jen-Hsiang; Rönneburg, Tilman; Carlborg, Örjan; Honaker, Christa F. et al.

Ingår i PLOS ONE, 2024

• DOI för Complex genetic architecture of the chicken Growth1 QTL region
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Orthopteran Neo-Sex Chromosomes Reveal Dynamics of Recombination Suppression and Evolution of Supergenes

Jayaprasad, Suvratha; Peona, Valentina; Ellerstrand, Simon J.; Rossini, Roberto et al.

Ingår i Molecular Ecology, 2024

• DOI för Orthopteran Neo-Sex Chromosomes Reveal Dynamics of Recombination Suppression and Evolution of Supergenes
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Selection against domestication alleles in introduced rabbit populations

Andrade, Pedro; Alves, Joel M.; Pereira, Paulo; Rubin, Carl-Johan et al.

Ingår i Nature Ecology & Evolution, 2024

• DOI för Selection against domestication alleles in introduced rabbit populations

Whole-genome selective sweep analyses identifies the region and candidate gene associated with white earlobe color in Mediterranean chickens

Guo, Ying; Rubin, Carl-Johan; Rönneburg, Tilman; Wang, Shouzhi et al.

Ingår i Poultry Science, 2024

• DOI för Whole-genome selective sweep analyses identifies the region and candidate gene associated with white earlobe color in Mediterranean chickens
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A frame-shift mutation in COMTD1 is associated with impaired pheomelanin pigmentation in chicken

Bi, Huijuan; Tranell, Jonas; Harper, Dawn C.; Lin, Weifeng et al.

Ingår i PLOS Genetics, 2023

• DOI för A frame-shift mutation in COMTD1 is associated with impaired pheomelanin pigmentation in chicken
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Community-wide genome sequencing reveals 30 years of Darwin's finch evolution

Enbody, Erik D.; Sendell-Price, Ashley T.; Sprehn, C. Grace; Rubin, Carl-Johan et al.

Ingår i Science, s. 1427-+, 2023

• DOI för Community-wide genome sequencing reveals 30 years of Darwin's finch evolution

Long-read whole-genome analysis of human single cells

Hård, Joanna; Mold, Jeff E; Eisfeldt, Jesper; Tellgren-Roth, Christian et al.

Ingår i Nature Communications, 2023

• DOI för Long-read whole-genome analysis of human single cells
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Heterochiasmy and the establishment of gsdf as a novel sex determining gene in Atlantic halibut

Edvardsen, Rolf Brudvik; Wallerman, Ola; Furmanek, Tomasz; Kleppe, Lene et al.

Ingår i PLOS Genetics, 2022

• DOI för Heterochiasmy and the establishment of gsdf as a novel sex determining gene in Atlantic halibut
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Rapid adaptive radiation of Darwin's finches depends on ancestral genetic modules

Rubin, Carl-Johan; Enbody, Erik D.; Dobreva, Mariya P.; Abzhanov, Arhat et al.

Ingår i Science Advances, 2022

• DOI för Rapid adaptive radiation of Darwin's finches depends on ancestral genetic modules
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Spatiotemporal variations in retrovirus-host interactions among Darwin’s finches

Hill, Jason; Lillie, Mette; Pettersson, Mats; Rubin, Carl-Johan et al.

Ingår i Nature Communications, 2022

• DOI för Spatiotemporal variations in retrovirus-host interactions among Darwin’s finches
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A multispecies BCO2 beak color polymorphism in the Darwin's finch radiation

Enbody, Erik D.; Sprehn, Charlotte Grace; Abzhanov, Arhat; Bi, Huijuan et al.

Ingår i Current Biology, s. 5597-56040000000, 2021

• DOI för A multispecies BCO2 beak color polymorphism in the Darwin's finch radiation
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Comparison of anadromous and landlocked Atlantic salmon genomes reveals signatures of parallel and relaxed selection across the Northern Hemisphere

Kjaerner-Semb, Erik; Edvardsen, Rolf B.; Ayllon, Fernando; Vogelsang, Petra et al.

Ingår i Evolutionary Applications, s. 446-461, 2021

• DOI för Comparison of anadromous and landlocked Atlantic salmon genomes reveals signatures of parallel and relaxed selection across the Northern Hemisphere

The Human Adenovirus 2 Transcriptome: An Amazing Complexity of Alternatively Spliced mRNAs

Westergren Jakobsson, Amanda; Segerman, Bo; Wallerman, Ola; Bergström Lind, Sara et al.

Ingår i Journal of Virology, 2021

• DOI för The Human Adenovirus 2 Transcriptome: An Amazing Complexity of Alternatively Spliced mRNAs
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The nedd-8 activating enzyme gene underlies genetic resistance to infectious pancreatic necrosis virus in Atlantic salmon

Pavelin, Jon; Jin, Ye Hwa; Gratacap, Remi L.; Taggart, John B. et al.

Ingår i Genomics, s. 3842-3850, 2021

• DOI för The nedd-8 activating enzyme gene underlies genetic resistance to infectious pancreatic necrosis virus in Atlantic salmon

The polarity protein Par3 coordinates positively self-renewal and negatively invasiveness in glioblastoma

Dadras, Mahsa Shahidi; Caja, Laia; Mezheyeuski, Artur; Liu, Sijia et al.

Ingår i Cell Death and Disease, 2021

• DOI för The polarity protein Par3 coordinates positively self-renewal and negatively invasiveness in glioblastoma
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Ultralow amounts of DNA from long-term archived serum samples produce high-quality methylomes

Wojewodzic, Marcin W.; Leithaug, Magnus; Lauritzen, Marianne; Lyle, Robert et al.

Ingår i Clinical Epigenetics, 2021

• DOI för Ultralow amounts of DNA from long-term archived serum samples produce high-quality methylomes
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Brain Transcriptomics of Wild and Domestic Rabbits Suggests That Changes in Dopamine Signaling and Ciliary Function Contributed to Evolution of Tameness

Sato, Daiki X.; Rafati, Nima; Ring, Henrik; Younis, Shady et al.

Ingår i Genome Biology and Evolution, s. 1918-1928, 2020

• DOI för Brain Transcriptomics of Wild and Domestic Rabbits Suggests That Changes in Dopamine Signaling and Ciliary Function Contributed to Evolution of Tameness

Reconstruction of the birth of a male sex chromosome present in Atlantic herring

Rafati, Nima; Chen, Junfeng; Herpin, Amaury; Pettersson, Mats et al.

Ingår i Proceedings of the National Academy of Sciences of the United States of America, s. 24359-24368, 2020

• DOI för Reconstruction of the birth of a male sex chromosome present in Atlantic herring
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Whole-genome genotyping and resequencing reveal the association of a deletion in the complex interferon alpha gene cluster with hypothyroidism in dogs

Bianchi, Matteo; Rafati, Nima; Karlsson, Åsa; Murén, Eva et al.

Ingår i BMC Genomics, 2020

• DOI för Whole-genome genotyping and resequencing reveal the association of a deletion in the complex interferon alpha gene cluster with hypothyroidism in dogs
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Exploring a Pool-seq-only approach for gaining population genomic insights in nonmodel species

Kurland, Sara; Wheat, Christopher W.; Mancera, Maria de la Paz Celorio; Kutschera, Verena E. et al.

Ingår i Ecology and Evolution, s. 11448-11463, 2019

• DOI för Exploring a Pool-seq-only approach for gaining population genomic insights in nonmodel species
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Genetics of adaptation in modern chicken

Qanbari, Saber; Rubin, Carl-Johan; Maqbool, Khurram; Weigend, Steffen et al.

Ingår i PLOS Genetics, 2019

• DOI för Genetics of adaptation in modern chicken
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Identification and validation of genetic variants predictive of gait in standardbred horses

McCoy, Annette M.; Beeson, Samantha K.; Rubin, Carl-Johan; Andersson, Leif et al.

Ingår i PLOS Genetics, 2019

• DOI för Identification and validation of genetic variants predictive of gait in standardbred horses
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Regulatory changes in pterin and carotenoid genes underlie balanced color polymorphisms in the wall lizard

Andrade, Pedro; Pinho, Catarina; Perez i de lanuza, Guillem; Afonso, Sandra et al.

Ingår i Proceedings of the National Academy of Sciences of the United States of America, s. 5633-5642, 2019

• DOI för Regulatory changes in pterin and carotenoid genes underlie balanced color polymorphisms in the wall lizard

The horse Y chromosome as an informative marker for tracing sire lines

Felkel, Sabine; Vogl, Claus; Rigler, Doris; Dobretsberger, Viktoria et al.

Ingår i Scientific Reports, 2019

• DOI för The horse Y chromosome as an informative marker for tracing sire lines
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A genomic map of clinal variation across the European rabbit hybrid zone

Rafati, Nima; Blanco-Aguiar, Jose A.; Rubin, Carl-Johan; Sayyab, Shumaila et al.

Ingår i Molecular Ecology, s. 1457-1478, 2018

• DOI för A genomic map of clinal variation across the European rabbit hybrid zone

Analysis of porcine body size variation using re-sequencing data of miniature and large pigs

Reimer, C.; Rubin, Carl-Johan; Sharifi, A. R.; Ha, N. -T et al.

Ingår i BMC Genomics, 2018

• DOI för Analysis of porcine body size variation using re-sequencing data of miniature and large pigs
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Asian horses deepen the MSY phylogeny

Felkel, S.; Vogl, C.; Rigler, D.; Jagannathan, V. et al.

Ingår i Animal Genetics, s. 90-93, 2018

• DOI för Asian horses deepen the MSY phylogeny

Changes in brain architecture are consistent with altered fear processing in domestic rabbits

Brusini, Irene; Carneiro, Miguel; Wang, Chunliang; Rubin, Carl-Johan et al.

Ingår i Proceedings of the National Academy of Sciences of the United States of America, s. 7380-7385, 2018

• DOI för Changes in brain architecture are consistent with altered fear processing in domestic rabbits

Elevated proportions of deleterious genetic variation in domestic animals and plants

Makino, Takashi; Rubin, Carl-Johan; Carneiro, Miguel; Axelsson, Erik et al.

Ingår i Genome Biology and Evolution, s. 276-290, 2018

• DOI för Elevated proportions of deleterious genetic variation in domestic animals and plants
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Whole-genome comparison of endogenous retrovirus segregation across wild and domestic host species populations

Rivas-Carrillo, Salvador Daniel; Pettersson, Mats; Rubin, Carl-Johan; Jern, Patric

Ingår i Proceedings of the National Academy of Sciences of the United States of America, s. 11012-11017, 2018

• DOI för Whole-genome comparison of endogenous retrovirus segregation across wild and domestic host species populations
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Dwarfism and Altered Craniofacial Development in Rabbits Is Caused by a 12.1 kb Deletion at the HMGA2 Locus

Carneiro, Miguel; Hu, Dou; Archer, John; Feng, Chungang et al.

Ingår i Genetics, s. 955-965, 2017

• DOI för Dwarfism and Altered Craniofacial Development in Rabbits Is Caused by a 12.1 kb Deletion at the HMGA2 Locus

Moderate nucleotide diversity in the Atlantic herring is associated with a low mutation rate

Feng, Chungang; Pettersson, Mats; Lamichhaney, Sangeet; Rubin, Carl-Johan et al.

Ingår i eLIFE, 2017

• DOI för Moderate nucleotide diversity in the Atlantic herring is associated with a low mutation rate
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The evolutionary history of the DMRT3 'Gait keeper' haplotype

Staiger, E. A.; Almén, M. S.; Promerova, M.; Brooks, S. et al.

Ingår i Animal Genetics, s. 551-559, 2017

• DOI för The evolutionary history of the DMRT3 'Gait keeper' haplotype

Y Chromosome Uncovers the Recent Oriental Origin of Modern Stallions

Wallner, Barbara; Palmieri, Nicola; Vogl, Claus; Rigler, Doris et al.

Ingår i Current Biology, s. 2029-2035, 2017

• DOI för Y Chromosome Uncovers the Recent Oriental Origin of Modern Stallions

Atlantic salmon populations reveal adaptive divergence of immune related genes - a duplicated genome under selection

Kjaerner-Semb, Erik; Ayllon, Fernando; Furmanek, Tomasz; Wennevik, Vidar et al.

Ingår i BMC Genomics, 2016

• DOI för Atlantic salmon populations reveal adaptive divergence of immune related genes - a duplicated genome under selection
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Decreased fracture rate, pharmacogenetics and BMD response in 79 Swedish children with osteogenesis imperfecta types I, III and IV treated with Pamidronate

Lindahl, Katarina; Kindmark, Andreas; Rubin, Carl-Johan; Malmgren, B. et al.

Ingår i Bone, s. 11-18, 2016

• DOI för Decreased fracture rate, pharmacogenetics and BMD response in 79 Swedish children with osteogenesis imperfecta types I, III and IV treated with Pamidronate

Large Deletions at the SHOX Locus in the Pseudoautosomal Region Are Associated with Skeletal Atavism in Shetland Ponies

Rafati, Nima; Andersson, Lisa S.; Mikko, Sofia; Feng, Chungang et al.

Ingår i G3, s. 2213-2223, 2016

• DOI för Large Deletions at the SHOX Locus in the Pseudoautosomal Region Are Associated with Skeletal Atavism in Shetland Ponies
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Regulatory mutations in TBX3 disrupt asymmetric hair pigmentation underlying Dun camouflage colour in horses

Imsland, Freyja; McGowan, Kelly; Rubin, Carl-Johan; Henegar, Corneliu et al.

Ingår i Nature Genetics, s. 152-158, 2016

• DOI för Regulatory mutations in TBX3 disrupt asymmetric hair pigmentation underlying Dun camouflage colour in horses

Second generation sequencing of microRNA in Human Bone Cells treated with Parathyroid Hormone or Dexamethasone

Laxman, Navya; Rubin, Carl-Johan; Mallmin, Hans; Nilsson, Olle et al.

Ingår i Bone, s. 181-188, 2016

• DOI för Second generation sequencing of microRNA in Human Bone Cells treated with Parathyroid Hormone or Dexamethasone

The genetic basis for ecological adaptation of the Atlantic herring revealed by genome sequencing

Martínez Barrio, Álvaro; Lamichhaney, Sangeet; Fan, Guangyi; Rafati, Nima et al.

Ingår i eLIFE, 2016

• DOI för The genetic basis for ecological adaptation of the Atlantic herring revealed by genome sequencing
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A Genomic Duplication is Associated with Ectopic Eomesodermin Expression in the Embryonic Chicken Comb and Two Duplex-comb Phenotypes

Dorshorst, Ben; Harun-Or-Rashid, Mohammad; Bagherpoor, Alireza Jian; Rubin, Carl-Johan et al.

Ingår i PLOS Genetics, 2015

• DOI för A Genomic Duplication is Associated with Ectopic Eomesodermin Expression in the Embryonic Chicken Comb and Two Duplex-comb Phenotypes
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Candidate genes underlying heritable differences in reproductive seasonality between wild and domestic rabbits

Carneiro, Miguel; Piorno, Vicente; Rubin, Carl-Johan; Alves, Joel M. et al.

Ingår i Animal Genetics, s. 418-425, 2015

• DOI för Candidate genes underlying heritable differences in reproductive seasonality between wild and domestic rabbits

Dominant Red Coat Color in Holstein Cattle Is Associated with a Missense Mutation in the Coatomer Protein Complex, Subunit Alpha (COPA) Gene

Dorshorst, Ben; Henegar, Corneliu; Liao, Xiaoping; Almén, Markus Sällman et al.

Ingår i PLOS ONE, 2015

• DOI för Dominant Red Coat Color in Holstein Cattle Is Associated with a Missense Mutation in the Coatomer Protein Complex, Subunit Alpha (COPA) Gene
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Evolution of Darwin's finches and their beaks revealed by genome sequencing

Lamichhaney, Sangeet; Berglund, Jonas; Almen, Markus Sällman; Maqbool, Khurram et al.

Ingår i Nature, 2015

• DOI för Evolution of Darwin's finches and their beaks revealed by genome sequencing

Genetic epidemiology, prevalence, and genotype-phenotype correlations in the Swedish population with osteogenesis imperfecta

Lindahl, Katarina; Astrom, Eva; Rubin, Carl-Johan; Grigelioniene, Giedre et al.

Ingår i European Journal of Human Genetics, s. 1042-1050, 2015

• DOI för Genetic epidemiology, prevalence, and genotype-phenotype correlations in the Swedish population with osteogenesis imperfecta

Global miRNA expression and correlation with mRNA levels in primary human bone cells

Laxman, Navya; Rubin, Carl-Johan; Mallmin, Hans; Nilsson, Olle et al.

Ingår i RNA, s. 1433-1443, 2015

• DOI för Global miRNA expression and correlation with mRNA levels in primary human bone cells
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The vgll3 Locus Controls Age at Maturity in Wild and Domesticated Atlantic Salmon (Salmo salar L.) Males

Ayllon, Fernando; Kjaerner-Semb, Erik; Furmanek, Tomasz; Wennevik, Vidar et al.

Ingår i PLOS Genetics, 2015

• DOI för The vgll3 Locus Controls Age at Maturity in Wild and Domesticated Atlantic Salmon (Salmo salar L.) Males
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A cis-Regulatory Mutation of PDSS2 Causes Silky-Feather in Chickens

Feng, Chungang; Gao, Yu; Dorshorst, Ben; Song, Chi et al.

Ingår i PLOS Genetics, 2014

• DOI för A cis-Regulatory Mutation of PDSS2 Causes Silky-Feather in Chickens
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Differentiation and Phylogenetic Relationships in Mycobacterium spp with Special Reference to the RNase P RNA Gene rnpB

Herrmann, Björn; Stolt, Pelle; Abdeldaim, Guma; Rubin, Carl-Johan et al.

Ingår i Current Microbiology, s. 634-639, 2014

• DOI för Differentiation and Phylogenetic Relationships in Mycobacterium spp with Special Reference to the RNase P RNA Gene rnpB