Linus Sandegren
Professor vid Institutionen för medicinsk biokemi och mikrobiologi; Infektioner och Immunitet; Linus Sandegren
- Telefon:
- 018-471 43 65
- E-post:
- Linus.Sandegren@imbim.uu.se
- Besöksadress:
- BMC
Husargatan 3
752 37 UPPSALA - Postadress:
- Box 582
751 23 UPPSALA
Projektkoordinator vid Uppsala antibiotikacentrum
- Besöksadress:
- BMC, SciLifeLab Entrance C11, Room E10:4210
752 37 Uppsala - Postadress:
- BMC, Box 582, Husargatan 3
751 23 Uppsala
Ladda ned kontaktuppgifter för Linus Sandegren vid Uppsala antibiotikacentrum
- Akademiska meriter:
- PhD
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Kort presentation
We study fundamental aspects of how resistance plasmids are maintained and disseminated between pathogenic bacteria and how they serve as platforms for evolution of antibiotic resistance. The main focus is to understand how factors such as stability, mobility, positive selection and fitness costs influence the evolutionary success of plasmids.
More info can be found at: https://www.imbim.uu.se/forskargrupper/infektion-och-immunitet/Sandegren_Linus/
Nyckelord
- antibiotic
- antibiotic resistance
- bacterial evolution
- bacterial genetics
- bacteriology
- bioinformatics
- experimental evolution
- infection biology
- microbiology
- molecular evolution
- uppsala antibiotic center
Forskning
Denna text finns inte på svenska, därför visas den engelska versionen.
Dynamics of plasmid-borne antibiotic resistance
We study fundamental aspects of how resistance plasmids are maintained and disseminated between pathogenic bacteria and how they serve as platforms for evolution of antibiotic resistance. The main focus is to understand how factors such as stability, mobility, positive selection and fitness cost influence the evolutionary success of plasmids. The experimental systems used are based on clinically isolated multi-resistance plasmids encoding extended spectrum β-lactamases (ESBLs) in enteric bacteria (Escherichia coli and Klebsiella pneumoniae) that pose an increasing clinical problem by providing bacteria with resistance to the most used antibiotics today, β-lactams such as penicillins and cephalosporins.
Four main themes are of particular interest in these studies:
- What impact do low levels of antibiotics have on spread, selection and maintenance of multi-resistance plasmids?
- What plasmid factors cause a fitness-cost on the host cell and can the fitness-cost of plasmid carriage be alleviated by the bacterium in the absence of antibiotics?
- How common are gene amplifications during treatment, how do they affect the efficacy of antibiotics and does the dynamics of gene amplification on plasmids accelerate evolution of new resistance?
- How is resistance development and plasmid dynamics influenced by bacterial growth in biofilms compared to planktonic growth?
From these studies we gain new knowledge of how bacterial cells and plasmids co-evolve and how selection of new resistance can accelerate through gene amplification at different antibiotic concentrations. Such knowledge can be used to design antibiotic treatment regimens that limit selection of resistance and minimize the potential for new resistance to evolve.
Publikationer
Senaste publikationer
- Reduced amplification by phi29 DNA polymerase in the presence of unbound oligos during reaction in RCA (2024)
- Molecular characteristics, fitness, and virulence of high-risk and non-high-risk clones of carbapenemase-producing Klebsiella pneumoniae (2024)
- Exchange of Carbapenem-Resistant Escherichia coli Sequence Type 38 Intercontinentally and among Wild Bird, Human, and Environmental Niches (2023)
- Strain-level bacterial typing directly from patient samples using optical DNA mapping (2023)
- Genomically diverse carbapenem resistant Enterobacteriaceae fromwild birds provide insight into global patterns of spatiotemporal dissemination (2022)
Alla publikationer
Artiklar
- Reduced amplification by phi29 DNA polymerase in the presence of unbound oligos during reaction in RCA (2024)
- Molecular characteristics, fitness, and virulence of high-risk and non-high-risk clones of carbapenemase-producing Klebsiella pneumoniae (2024)
- Exchange of Carbapenem-Resistant Escherichia coli Sequence Type 38 Intercontinentally and among Wild Bird, Human, and Environmental Niches (2023)
- Strain-level bacterial typing directly from patient samples using optical DNA mapping (2023)
- Genomically diverse carbapenem resistant Enterobacteriaceae fromwild birds provide insight into global patterns of spatiotemporal dissemination (2022)
- Evaluation of In Vitro Activity of Double-Carbapenem Combinations against KPC-2-, OXA-48-and NDM-Producing Escherichia coli and Klebsiella pneumoniae (2022)
- A simple cut and stretch assay to detect antimicrobial resistance genes on bacterial plasmids by single-molecule fluorescence microscopy (2022)
- Metallo-β-Lactamase Inhibitor Phosphonamidate Monoesters (2022)
- Evolutionary Trajectories toward High-Level β-Lactam/β-Lactamase Inhibitor Resistance in the Presence of Multiple β-Lactamases (2022)
- The Role of Antibiotic Resistance Genes in the Fitness Cost of Multiresistance Plasmids (2022)
- Naked-eye detection of antibiotic resistance gene sul1 based on aggregation of magnetic nanoparticles and DNA amplification products (2022)
- Modular 3D-Printed Peg Biofilm Device for Flexible Setup of Surface-Related Biofilm Studies (2022)
- Selection of Resistant Bacteria in Mallards Exposed to Subinhibitory Concentrations of Ciprofloxacin in Their Water Environment (2021)
- Detection of structural variations in densely-labelled optical DNA barcodes: A hidden Markov model approach (2021)
- A Parallelized Nanofluidic Device for High-Throughput Optical DNA Mapping of Bacterial Plasmids (2021)
- Dynamics of Extensive Drug Resistance Evolution of Mycobacterium tuberculosis in a Single Patient During 9 Years of Disease and Treatment (2020)
- Cultivation-Free Typing of Bacteria Using Optical DNA Mapping (2020)
- Efficacy of Antibiotic Combinations against Multidrug-Resistant Pseudomonas aeruginosa in Automated Time-Lapse Microscopy and Static Time-Kill Experiments (2020)
- Optical DNA Mapping Combined with Cas9-Targeted Resistance Gene Identification for Rapid Tracking of Resistance Plasmids in a Neonatal Intensive Care Unit Outbreak (2019)
- Dynamics of Resistance Plasmids in Extended-Spectrum-beta-Lactamase-Producing Enterobacteriaceae during Postinfection Colonization (2019)
- Genome and plasmid diversity of Extended-Spectrum beta-Lactamase-producing Escherichia coli ST131-tracking phylogenetic trajectories with Bayesian inference (2019)
- Low sub-minimal inhibitory concentrations of antibiotics generate new types of resistance (2019)
- Facilitated sequence assembly using densely labeled optical DNA barcodes (2018)
- Long-term carriage and rapid transmission of extended spectrum beta-lactamase-producing E. coli within a flock of Mallards in the absence of antibiotic selection (2018)
- A bla(OXA-181)-harbouring multi-resistant ST147 Klebsiella pneumoniae isolate from Pakistan that represent an intermediate stage towards pan-drug resistance (2017)
- Combinations of mutations in envZ, ftsI, mrdA, acrB and acrR can cause high-level carbapenem resistance in Escherichia coli (2016)
- Characterization of ESBL disseminating plasmids (2016)
- Fitness of Escherichia coli mutants with reduced susceptibility to tigecycline (2016)
- Potential of tetracycline resistance proteins to evolve tigecycline resistance (2016)
- Direct identification of antibiotic resistance genes on single plasmid molecules using CRISPR/Cas9 in combination with optical DNA mapping (2016)
- Rapid identification of intact bacterial resistance plasmids via optical mapping of single DNA molecules (2016)
- A pharmacokinetic-pharmacodynamic model characterizing the emergence of resistant Escherichia coli subpopulations during ertapenem exposure (2016)
- Fast size-determination of intact bacterial plasmids using nanofluidic channels (2015)
- High Fitness Costs and Instability of Gene Duplications Reduce Rates of Evolution of New Genes by Duplication-Divergence Mechanisms (2014)
- Selection of a multidrug resistance plasmid by sublethal levels of antibiotics and heavy metals (2014)
- The Gull (Chroicocephalus brunnicephalus) as an Environmental Bioindicator and Reservoir for Antibiotic Resistance on the Coastlines of the Bay of Bengal (2014)
- Time lapse investigation of antibiotic susceptibility using a microfluidic linear gradient 3D culture device (2014)
- Selection of Orphan Rhs Toxin Expression in Evolved Salmonella enterica Serovar Typhimurium (2014)
- Selection of antibiotic resistance at very low antibiotic concentrations (2014)
- Silver resistance genes are overrepresented among Escherichia coli isolates with CTX-M production (2014)
- Influence of acquired β-lactamases on the evolution of spontaneous carbapenem resistance in Escherichia coli (2013)
- Plasmidome-Analysis of ESBL-Producing Escherichia coli Using Conventional Typing and High-Throughput Sequencing (2013)
- Pathoadaptive Mutations in Salmonella enterica Isolated after Serial Passage in Mice (2013)
- Mechanisms and fitness costs of tigecycline resistance in Escherichia coli (2013)
- Frequent emergence of porin-deficient subpopulations with reduced carbapenem susceptibility in ESBL-producing Escherichia coli during exposure to ertapenem in an in vitro pharmacokinetic model (2013)
- Antimicrobial Drug-Resistant Escherichia coli in Wild Birds and Free-range Poultry, Bangladesh (2012)
- Transfer of an Escherichia coli ST131 multiresistance cassette has created a Klebsiella pneumoniae-specific plasmid associated with a major nosocomial outbreak (2012)
- Selection of Resistant Bacteria at Very Low Antibiotic Concentrations (2011)
- Genomic Stability over 9 Years of an Isoniazid Resistant Mycobacterium tuberculosis Outbreak Strain in Sweden (2011)
- Bacterial gene amplification (2009)
- The first major extended-spectrum beta-lactamase outbreak in Scandinavia was caused by clonal spread of a multiresistant Klebsiella pneumoniae producing CTX-M-15 (2008)
- Nitrofurantoin resistance mechanism and fitness cost in Escherichia coli (2008)
- Mutation in the Copper-Induced sil Operon Enables High-Level Silver Resistance and Silver Facilitated Co-Selection of Multidrug Resistance Plasmid
- Spread of resistance plasmids and selection of resistant bacteria among Mallards exposed to sub-inhibitory concentrations of antibiotics in their water environment
- Evolutionary trajectories towards high-level β-lactam/β-lactamase inhibitor resistance of a multi-resistance plasmid carrying multiple β-lactamases
Konferenser
- Circle to circle amplification for detection of antibiotic resistance genes (2022)
- A microfluidic approach for dynamic investigation of the antibiotic susceptibility of bacteria (2013)