Carina Farah Mugal

A Nearly Neutral Model of Molecular Signatures of Natural Selection after Change in Population Size

Müller, Rebekka; Kaj, Ingemar; Mugal, Carina

Ingår i Genome Biology and Evolution, 2022

• DOI för A Nearly Neutral Model of Molecular Signatures of Natural Selection after Change in Population Size
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Positive selection plays a major role in shaping signatures of differentiation across the genomic landscape of two independent Ficedula flycatcher species pairs

Chase, Madeline A.; Ellegren, Hans; Mugal, Carina F.

Ingår i Evolution, s. 2179-2196, 2021

• DOI för Positive selection plays a major role in shaping signatures of differentiation across the genomic landscape of two independent Ficedula flycatcher species pairs
• Ladda ner fulltext (pdf) av Positive selection plays a major role in shaping signatures of differentiation across the genomic landscape of two independent Ficedula flycatcher species pairs

Tissue-specific patterns of regulatory changes underlying gene expression differences among Ficedula flycatchers and their naturally occurring F₁ hybrids

Mugal, Carina; Wang, Mi; Backström, Niclas; Wheatcroft, David et al.

Ingår i Genome Research, s. 1727-1739, 2020

• DOI för Tissue-specific patterns of regulatory changes underlying gene expression differences among Ficedula flycatchers and their naturally occurring F₁ hybrids
• Ladda ner fulltext (pdf) av Tissue-specific patterns of regulatory changes underlying gene expression differences among Ficedula flycatchers and their naturally occurring F₁ hybrids

GC-biased gene conversion conceals the prediction of the nearly neutral theory in avian genomes

Bolivar, Paulina; Gueguen, Laurent; Duret, Laurent; Ellegren, Hans et al.

Ingår i Genome Biology, 2019

• DOI för GC-biased gene conversion conceals the prediction of the nearly neutral theory in avian genomes
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Whole-genome patterns of linkage disequilibrium across flycatcher populations clarify the causes and consequences of fine-scale recombination rate variation in birds

Kawakami, Takeshi; Mugal, Carina; Suh, Alexander; Nater, Alexander et al.

Ingår i Molecular Ecology, s. 4158-4172, 2017

• DOI för Whole-genome patterns of linkage disequilibrium across flycatcher populations clarify the causes and consequences of fine-scale recombination rate variation in birds
• Ladda ner fulltext (pdf) av Whole-genome patterns of linkage disequilibrium across flycatcher populations clarify the causes and consequences of fine-scale recombination rate variation in birds

The non-equilibrium allele frequency spectrum in a Poisson random field framework

Kaj, Ingemar; Mugal, Carina F.

Ingår i Theoretical Population Biology, s. 51-64, 2016

• DOI för The non-equilibrium allele frequency spectrum in a Poisson random field framework

Divergence in expression of a singing-related neuroplasticity gene in the brains of 2 Ficedula flycatchers and their hybrids

Wheatcroft, David; Backström, Niclas; Dutoit, Ludovic; McFarlane, S. Eryn et al.

Ingår i G3, 2025

• DOI för Divergence in expression of a singing-related neuroplasticity gene in the brains of 2 Ficedula flycatchers and their hybrids
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A Wright-Fisher graph model and the impact of directional selection on genetic variation

Kaj, Ingemar; Mugal, Carina F.; Müller-Widmann, Rebekka

Ingår i Theoretical Population Biology, s. 13-24, 2024

• DOI för A Wright-Fisher graph model and the impact of directional selection on genetic variation
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Regulatory and evolutionary impact of DNA methylation in two songbird species and their naturally occurring F₁ hybrids

Boman, Jesper; Qvarnström, Anna; Mugal, Carina

Ingår i BMC Biology, 2024

• DOI för Regulatory and evolutionary impact of DNA methylation in two songbird species and their naturally occurring F₁ hybrids
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The role of recombination dynamics in shaping signatures of direct and indirect selection across the Ficedula flycatcher genome

Chase, Madeline; Vilcot, Maurine; Mugal, Carina

Ingår i Proceedings of the Royal Society of London. Biological Sciences, 2024

• DOI för The role of recombination dynamics in shaping signatures of direct and indirect selection across the Ficedula flycatcher genome

A Nearly Neutral Model of Molecular Signatures of Natural Selection after Change in Population Size

Müller, Rebekka; Kaj, Ingemar; Mugal, Carina

Ingår i Genome Biology and Evolution, 2022

• DOI för A Nearly Neutral Model of Molecular Signatures of Natural Selection after Change in Population Size
• Ladda ner fulltext (pdf) av A Nearly Neutral Model of Molecular Signatures of Natural Selection after Change in Population Size

Divergence in expression of a singing-related neuroplasticity gene in the brains of 2 Ficedula flycatchers and their hybrids

Wheatcroft, David; Backström, Niclas; Dutoit, Ludovic; McFarlane, S. Eryn et al.

Ingår i G3, 2025

• DOI för Divergence in expression of a singing-related neuroplasticity gene in the brains of 2 Ficedula flycatchers and their hybrids
• Ladda ner fulltext (pdf) av Divergence in expression of a singing-related neuroplasticity gene in the brains of 2 Ficedula flycatchers and their hybrids

A Wright-Fisher graph model and the impact of directional selection on genetic variation

Kaj, Ingemar; Mugal, Carina F.; Müller-Widmann, Rebekka

Ingår i Theoretical Population Biology, s. 13-24, 2024

• DOI för A Wright-Fisher graph model and the impact of directional selection on genetic variation
• Ladda ner fulltext (pdf) av A Wright-Fisher graph model and the impact of directional selection on genetic variation

Regulatory and evolutionary impact of DNA methylation in two songbird species and their naturally occurring F₁ hybrids

Boman, Jesper; Qvarnström, Anna; Mugal, Carina

Ingår i BMC Biology, 2024

• DOI för Regulatory and evolutionary impact of DNA methylation in two songbird species and their naturally occurring F₁ hybrids
• Ladda ner fulltext (pdf) av Regulatory and evolutionary impact of DNA methylation in two songbird species and their naturally occurring F₁ hybrids

The role of recombination dynamics in shaping signatures of direct and indirect selection across the Ficedula flycatcher genome

Chase, Madeline; Vilcot, Maurine; Mugal, Carina

Ingår i Proceedings of the Royal Society of London. Biological Sciences, 2024

• DOI för The role of recombination dynamics in shaping signatures of direct and indirect selection across the Ficedula flycatcher genome

A Nearly Neutral Model of Molecular Signatures of Natural Selection after Change in Population Size

Müller, Rebekka; Kaj, Ingemar; Mugal, Carina

Ingår i Genome Biology and Evolution, 2022

• DOI för A Nearly Neutral Model of Molecular Signatures of Natural Selection after Change in Population Size
• Ladda ner fulltext (pdf) av A Nearly Neutral Model of Molecular Signatures of Natural Selection after Change in Population Size

The Effects of GC-Biased Gene Conversion on Patterns of Genetic Diversity among and across Butterfly Genomes

Boman, Jesper; Mugal, Carina F.; Backström, Niclas

Ingår i Genome Biology and Evolution, 2021

• DOI för The Effects of GC-Biased Gene Conversion on Patterns of Genetic Diversity among and across Butterfly Genomes
• Ladda ner fulltext (pdf) av The Effects of GC-Biased Gene Conversion on Patterns of Genetic Diversity among and across Butterfly Genomes

Positive selection plays a major role in shaping signatures of differentiation across the genomic landscape of two independent Ficedula flycatcher species pairs

Chase, Madeline A.; Ellegren, Hans; Mugal, Carina F.

Ingår i Evolution, s. 2179-2196, 2021

• DOI för Positive selection plays a major role in shaping signatures of differentiation across the genomic landscape of two independent Ficedula flycatcher species pairs
• Ladda ner fulltext (pdf) av Positive selection plays a major role in shaping signatures of differentiation across the genomic landscape of two independent Ficedula flycatcher species pairs

Polymorphism Data Assist Estimation of the Nonsynonymous over Synonymous Fixation Rate Ratio omega for Closely Related Species

Mugal, Carina; Kutschera, Verena E.; Botero-Castro, Fidel; Wolf, Jochen B. W. et al.

Ingår i Molecular biology and evolution, s. 260-279, 2020

• DOI för Polymorphism Data Assist Estimation of the Nonsynonymous over Synonymous Fixation Rate Ratio omega for Closely Related Species
• Ladda ner fulltext (pdf) av Polymorphism Data Assist Estimation of the Nonsynonymous over Synonymous Fixation Rate Ratio omega for Closely Related Species

Tissue-specific patterns of regulatory changes underlying gene expression differences among Ficedula flycatchers and their naturally occurring F₁ hybrids

Mugal, Carina; Wang, Mi; Backström, Niclas; Wheatcroft, David et al.

Ingår i Genome Research, s. 1727-1739, 2020

• DOI för Tissue-specific patterns of regulatory changes underlying gene expression differences among Ficedula flycatchers and their naturally occurring F₁ hybrids
• Ladda ner fulltext (pdf) av Tissue-specific patterns of regulatory changes underlying gene expression differences among Ficedula flycatchers and their naturally occurring F₁ hybrids

GC-biased gene conversion conceals the prediction of the nearly neutral theory in avian genomes

Bolivar, Paulina; Gueguen, Laurent; Duret, Laurent; Ellegren, Hans et al.

Ingår i Genome Biology, 2019

• DOI för GC-biased gene conversion conceals the prediction of the nearly neutral theory in avian genomes
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Biased Inference of Selection Due to GC-Biased Gene Conversion and the Rate of Protein Evolution in Flycatchers When Accounting for It

Bolivar, Paulina; Mugal, Carina; Sebastiano, Matteo Rossi; Nater, Alexander et al.

Ingår i Molecular biology and evolution, s. 2475-2486, 2018

• DOI för Biased Inference of Selection Due to GC-Biased Gene Conversion and the Rate of Protein Evolution in Flycatchers When Accounting for It
• Ladda ner fulltext (pdf) av Biased Inference of Selection Due to GC-Biased Gene Conversion and the Rate of Protein Evolution in Flycatchers When Accounting for It

Positive selection on human gamete-recognition genes

Hart, Michael W.; Stover, Daryn A.; Guerra, Vanessa; Mozaffari, Sahar V. et al.

Ingår i PeerJ, 2018

• DOI för Positive selection on human gamete-recognition genes
• Ladda ner fulltext (pdf) av Positive selection on human gamete-recognition genes

Sex-biased gene expression, sexual antagonism and levels of genetic diversity in the collared flycatcher (Ficedula albicollis) genome

Dutoit, Ludovic; Mugal, Carina; Bolivar, Paulina; Wang, Mi et al.

Ingår i Molecular Ecology, s. 3572-3581, 2018

• DOI för Sex-biased gene expression, sexual antagonism and levels of genetic diversity in the collared flycatcher (Ficedula albicollis) genome
• Ladda ner fulltext (pdf) av Sex-biased gene expression, sexual antagonism and levels of genetic diversity in the collared flycatcher (Ficedula albicollis) genome

Whole-genome patterns of linkage disequilibrium across flycatcher populations clarify the causes and consequences of fine-scale recombination rate variation in birds

Kawakami, Takeshi; Mugal, Carina; Suh, Alexander; Nater, Alexander et al.

Ingår i Molecular Ecology, s. 4158-4172, 2017

• DOI för Whole-genome patterns of linkage disequilibrium across flycatcher populations clarify the causes and consequences of fine-scale recombination rate variation in birds
• Ladda ner fulltext (pdf) av Whole-genome patterns of linkage disequilibrium across flycatcher populations clarify the causes and consequences of fine-scale recombination rate variation in birds

Genomic distribution and estimation of nucleotide diversity in natural populations: perspectives from the collared flycatcher (Ficedula albicollis) genome

Dutoit, Ludovic; Burri, Reto; Nater, Alexander; Mugal, Carina F. et al.

Ingår i Molecular Ecology Resources, s. 586-597, 2017

• DOI för Genomic distribution and estimation of nucleotide diversity in natural populations: perspectives from the collared flycatcher (Ficedula albicollis) genome
• Ladda ner fulltext (pdf) av Genomic distribution and estimation of nucleotide diversity in natural populations: perspectives from the collared flycatcher (Ficedula albicollis) genome

Covariation in levels of nucleotide diversity in homologous regions of the avian genome long after completion of lineage sorting

Dutoit, Ludovic; Vijay, Nagarjun; Mugal, Carina F.; Bossu, Christen M. et al.

Ingår i Proceedings of the Royal Society of London. Biological Sciences, 2017

• DOI för Covariation in levels of nucleotide diversity in homologous regions of the avian genome long after completion of lineage sorting

Recombination Rate Variation Modulates Gene Sequence Evolution Mainly via GC-Biased Gene Conversion, Not Hill-Robertson Interference, in an Avian System

Bolívar, Paulina; Mugal, Carina F; Nater, Alexander; Ellegren, Hans

Ingår i Molecular biology and evolution, s. 216-227, 2016

• DOI för Recombination Rate Variation Modulates Gene Sequence Evolution Mainly via GC-Biased Gene Conversion, Not Hill-Robertson Interference, in an Avian System
• Ladda ner fulltext (pdf) av Recombination Rate Variation Modulates Gene Sequence Evolution Mainly via GC-Biased Gene Conversion, Not Hill-Robertson Interference, in an Avian System

High-Resolution Mapping of Crossover and Non-crossover Recombination Events by Whole-Genome Re-sequencing of an Avian Pedigree

Smeds, Linnéa; Mugal, Carina F; Qvarnström, Anna; Ellegren, Hans

Ingår i PLOS Genetics, 2016

• DOI för High-Resolution Mapping of Crossover and Non-crossover Recombination Events by Whole-Genome Re-sequencing of an Avian Pedigree
• Ladda ner fulltext (pdf) av High-Resolution Mapping of Crossover and Non-crossover Recombination Events by Whole-Genome Re-sequencing of an Avian Pedigree

Divergence in gene expression within and between two closely related flycatcher species

Uebbing, Severin; Künstner, Axel; Mäkinen, Hannu; Backström, Niclas et al.

Ingår i Molecular Ecology, s. 2015-2028, 2016

• DOI för Divergence in gene expression within and between two closely related flycatcher species
• Ladda ner fulltext (pdf) av Divergence in gene expression within and between two closely related flycatcher species

Selection on coevolving human gamete recognition genes

Hart, M. W.; Stover, D.; Mozaffari, S. ; Ober, C. et al.

Ingår i Integrative and Comparative Biology, 2016

The non-equilibrium allele frequency spectrum in a Poisson random field framework

Kaj, Ingemar; Mugal, Carina F.

Ingår i Theoretical Population Biology, s. 51-64, 2016

• DOI för The non-equilibrium allele frequency spectrum in a Poisson random field framework

GC-biased gene conversion links the recombination landscape and demography to genomic base composition: GC-biased gene conversion drives genomic base composition across a wide range of species

Mugal, Carina F; Weber, Claudia C; Ellegren, Hans

Ingår i Bioessays, s. 1317-1326, 2015

• DOI för GC-biased gene conversion links the recombination landscape and demography to genomic base composition: GC-biased gene conversion drives genomic base composition across a wide range of species

Evolutionary Consequences of DNA Methylation on the GC Content in Vertebrate Genomes

Mugal, Carina F.; Arndt, Peter F.; Holm, Lena; Ellegren, Hans

Ingår i G3, s. 441-447, 2015

• DOI för Evolutionary Consequences of DNA Methylation on the GC Content in Vertebrate Genomes
• Ladda ner fulltext (pdf) av Evolutionary Consequences of DNA Methylation on the GC Content in Vertebrate Genomes

Linked selection and recombination rate variation drive the evolution of the genomic landscape of differentiation across the speciation continuum of Ficedula flycatchers

Burri, Reto; Nater, Alexander; Kawakami, Takeshi; Mugal, Carina F. et al.

Ingår i Genome Research, s. 1656-1665, 2015

• DOI för Linked selection and recombination rate variation drive the evolution of the genomic landscape of differentiation across the speciation continuum of Ficedula flycatchers
• Ladda ner fulltext (pdf) av Linked selection and recombination rate variation drive the evolution of the genomic landscape of differentiation across the speciation continuum of Ficedula flycatchers

Why Time Matters: Codon Evolution and the Temporal Dynamics of dN/dS

Mugal, Carina F; Wolf, Jochen B W; Kaj, Ingemar

Ingår i Molecular biology and evolution, s. 212-231, 2014

• DOI för Why Time Matters: Codon Evolution and the Temporal Dynamics of dN/dS

Twisted Signatures of GC-Biased Gene Conversion Embedded in an Evolutionary Stable Karyotype

Mugal, Carina F.; Arndt, Peter F.; Ellegren, Hans

Ingår i Molecular biology and evolution, s. 1700-1712, 2013

• DOI för Twisted Signatures of GC-Biased Gene Conversion Embedded in an Evolutionary Stable Karyotype

Genome-wide analysis in chicken reveals that local levels of genetic diversity are mainly governed by the rate of recombination

Mugal, Carina F.; Nabholz, Benoit; Ellegren, Hans

Ingår i BMC Genomics, s. 86, 2013

• DOI för Genome-wide analysis in chicken reveals that local levels of genetic diversity are mainly governed by the rate of recombination
• Ladda ner fulltext (pdf) av Genome-wide analysis in chicken reveals that local levels of genetic diversity are mainly governed by the rate of recombination

Substitution rate variation at human CpG sites correlates with non-CpG divergence, methylation level and GC content

Mugal, Carina F.; Ellegren, Hans

Ingår i Genome Biology, 2011

• DOI för Substitution rate variation at human CpG sites correlates with non-CpG divergence, methylation level and GC content

Conservation of Neutral Substitution Rate and Substitutional Asymmetries in Mammalian Genes

Mugal, Carina F.; Wolf, Jochen; von Gruenberg, H. H.; Ellegren, Hans

Ingår i Genome Biology and Evolution, s. 19-28, 2010

• DOI för Conservation of Neutral Substitution Rate and Substitutional Asymmetries in Mammalian Genes

Molecular evolution of genes in avian genomes

Nam, Kiwoong; Mugal, Carina; Nabholz, Benoit; Schielzeth, Holger et al.

Ingår i Genome Biology, 2010

• DOI för Molecular evolution of genes in avian genomes

Transcription-induced mutational strand bias and its effect on substitution rates in human genes

Mugal, Carina F.; von Grünberg, Hans-Hennig; Peifer, Martin

Ingår i Molecular biology and evolution, s. 131-142, 2009

• DOI för Transcription-induced mutational strand bias and its effect on substitution rates in human genes

The role of recombination dynamics in shaping signatures of direct and indirect selection across the Ficedula flycatcher genome

Chase, Madeline; Mugal, Carina

• DOI för The role of recombination dynamics in shaping signatures of direct and indirect selection across the Ficedula flycatcher genome

A high-density linkage map enables a second-generation collared flycatcher genome assembly and reveals the patterns of avian recombination rate variation and chromosomal evolution

Kawakami, Takeshi; Smeds, Linnea; Backstrom, Niclas; Husby, Arild et al.

Ingår i Molecular Ecology, s. 4035-4058, 2014

• DOI för A high-density linkage map enables a second-generation collared flycatcher genome assembly and reveals the patterns of avian recombination rate variation and chromosomal evolution
• Ladda ner fulltext (pdf) av A high-density linkage map enables a second-generation collared flycatcher genome assembly and reveals the patterns of avian recombination rate variation and chromosomal evolution

Nucleotide Substitution Patterns in Vertebrate Genomes

Mugal, Carina Farah

2013

• Ladda ner fulltext (pdf) av Nucleotide Substitution Patterns in Vertebrate Genomes

Single-Cell Transcriptomics reveals relaxed evolutionary constraint of spermatogenesis in two passerine birds as compared to mammals

Segami, Carolina; Semon, Marie; Cunha, Catarina; Bergin, Claudia et al.

2022

• DOI för Single-Cell Transcriptomics reveals relaxed evolutionary constraint of spermatogenesis in two passerine birds as compared to mammals
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The genomic basis of hybrid male sterility in Ficedula flycatchers

Segami, Carolina; Mugal, Carina; Cunha, Catarina; Bergin, Claudia et al.

The combination of HiFi and HiC sequencing technologies enables the investigation of structural variants in speciation of Ficedula flycatchers

Chase, Madeline; Scofield, Douglas; Kraft, Fanny-Linn; Segami, Carolina et al.

Evidence that genetic drift not adaptation drives fast-Z and large-Z effects in Ficedula flycatchers

Chase, Madeline; Vilcot, Maurine; Mugal, Carina