Douglas Huseby
Researcher at Department of Medical Biochemistry and Microbiology; Infection and Immunity; Diarmaid Hughes
- E-mail:
- douglas.huseby@imbim.uu.se
- Visiting address:
- BMC
Husargatan 3
752 37 UPPSALA - Postal address:
- Box 582
751 23 UPPSALA
Short presentation
My primary research area is the evolution of antibiotic resistance in bacterial populations. I investigate this by evolving bacteria in the presence of antibiotics and then using whole genome sequencing and genetic techniques to reconstruct the evolutionary steps that occurred during the development of resistance. I do this using both existing antibiotics and novel compounds under development. Through this I hope to understand the mechanisms by which bacterial populations develop resistance.
Keywords
- evolution
- genetics
- antibiotic
- bacterial genetics
- whole-genome sequencing
Biography
Also find me at: Linkedin
Complete publication list: Pubmed

Publications
Selection of publications
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Part of Proceedings of the National Academy of Sciences of the United States of America, 2024
- DOI for Antibiotic class with potent in vivo activity targeting lipopolysaccharide synthesis in Gram-negative bacteria
- Download full text (pdf) of Antibiotic class with potent in vivo activity targeting lipopolysaccharide synthesis in Gram-negative bacteria
Recent publications
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Part of Microbiology Spectrum, 2026
- DOI for The COMBINE pneumonia model: a multicenter study to standardize a mouse pneumonia model with Pseudomonas aeruginosa and Klebsiella pneumoniae for antibiotic development
- Download full text (pdf) of The COMBINE pneumonia model: a multicenter study to standardize a mouse pneumonia model with Pseudomonas aeruginosa and Klebsiella pneumoniae for antibiotic development
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Part of Molecular biology and evolution, 2026
- DOI for Integrated conjugative elements drive the formation of pandemic clones of Escherichia coli with hybrid chromosomes
- Download full text (pdf) of Integrated conjugative elements drive the formation of pandemic clones of Escherichia coli with hybrid chromosomes
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Part of Proceedings of the National Academy of Sciences of the United States of America, 2024
- DOI for Antibiotic class with potent in vivo activity targeting lipopolysaccharide synthesis in Gram-negative bacteria
- Download full text (pdf) of Antibiotic class with potent in vivo activity targeting lipopolysaccharide synthesis in Gram-negative bacteria
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Part of International Journal of Antimicrobial Agents, 2024
- DOI for Apramycin efficacy against carbapenem- and aminoglycoside-resistant Escherichia coli and Klebsiella pneumoniae in murine bloodstream infection models
- Download full text (pdf) of Apramycin efficacy against carbapenem- and aminoglycoside-resistant Escherichia coli and Klebsiella pneumoniae in murine bloodstream infection models
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Part of Journal of Medicinal Chemistry, p. 1380-1425, 2023
- DOI for Discovery and Hit-to-Lead Optimization of Benzothiazole Scaffold- Based DNA Gyrase Inhibitors with Potent Activity against Acinetobacter baumannii and Pseudomonas aeruginosa
- Download full text (pdf) of Discovery and Hit-to-Lead Optimization of Benzothiazole Scaffold- Based DNA Gyrase Inhibitors with Potent Activity against Acinetobacter baumannii and Pseudomonas aeruginosa
All publications
Articles in journal
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Part of Microbiology Spectrum, 2026
- DOI for The COMBINE pneumonia model: a multicenter study to standardize a mouse pneumonia model with Pseudomonas aeruginosa and Klebsiella pneumoniae for antibiotic development
- Download full text (pdf) of The COMBINE pneumonia model: a multicenter study to standardize a mouse pneumonia model with Pseudomonas aeruginosa and Klebsiella pneumoniae for antibiotic development
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Part of Molecular biology and evolution, 2026
- DOI for Integrated conjugative elements drive the formation of pandemic clones of Escherichia coli with hybrid chromosomes
- Download full text (pdf) of Integrated conjugative elements drive the formation of pandemic clones of Escherichia coli with hybrid chromosomes
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Part of Proceedings of the National Academy of Sciences of the United States of America, 2024
- DOI for Antibiotic class with potent in vivo activity targeting lipopolysaccharide synthesis in Gram-negative bacteria
- Download full text (pdf) of Antibiotic class with potent in vivo activity targeting lipopolysaccharide synthesis in Gram-negative bacteria
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Part of International Journal of Antimicrobial Agents, 2024
- DOI for Apramycin efficacy against carbapenem- and aminoglycoside-resistant Escherichia coli and Klebsiella pneumoniae in murine bloodstream infection models
- Download full text (pdf) of Apramycin efficacy against carbapenem- and aminoglycoside-resistant Escherichia coli and Klebsiella pneumoniae in murine bloodstream infection models
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Part of Journal of Medicinal Chemistry, p. 1380-1425, 2023
- DOI for Discovery and Hit-to-Lead Optimization of Benzothiazole Scaffold- Based DNA Gyrase Inhibitors with Potent Activity against Acinetobacter baumannii and Pseudomonas aeruginosa
- Download full text (pdf) of Discovery and Hit-to-Lead Optimization of Benzothiazole Scaffold- Based DNA Gyrase Inhibitors with Potent Activity against Acinetobacter baumannii and Pseudomonas aeruginosa
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Part of Journal of Medicinal Chemistry, p. 3968-3994, 2023
- DOI for New Dual Inhibitors of Bacterial Topoisomerases with Broad-Spectrum Antibacterial Activity and In Vivo Efficacy against Vancomycin-Intermediate Staphylococcus aureus
- Download full text (pdf) of New Dual Inhibitors of Bacterial Topoisomerases with Broad-Spectrum Antibacterial Activity and In Vivo Efficacy against Vancomycin-Intermediate Staphylococcus aureus
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Part of Molecular biology and evolution, 2022
- DOI for Positive Selection during Niche Adaptation Results in Large-Scale and Irreversible Rearrangement of Chromosomal Gene Order in Bacteria
- Download full text (pdf) of Positive Selection during Niche Adaptation Results in Large-Scale and Irreversible Rearrangement of Chromosomal Gene Order in Bacteria
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Evolution of Bacterial Interspecies Hybrids with Enlarged Chromosomes
Part of Genome Biology and Evolution, 2022
- DOI for Evolution of Bacterial Interspecies Hybrids with Enlarged Chromosomes
- Download full text (pdf) of Evolution of Bacterial Interspecies Hybrids with Enlarged Chromosomes
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Part of Journal of Antimicrobial Chemotherapy, p. 77-83, 2021
- DOI for Resistance/fitness trade-off is a barrier to the evolution of MarR inactivation mutants in Escherichia coli
- Download full text (pdf) of Resistance/fitness trade-off is a barrier to the evolution of MarR inactivation mutants in Escherichia coli
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Part of Journal of Antimicrobial Chemotherapy, p. 1441-1447, 2021
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Genetic Architecture and Fitness of Bacterial Interspecies Hybrids
Part of Molecular biology and evolution, p. 1472-1481, 2021
- DOI for Genetic Architecture and Fitness of Bacterial Interspecies Hybrids
- Download full text (pdf) of Genetic Architecture and Fitness of Bacterial Interspecies Hybrids
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Part of EBioMedicine, 2021
- DOI for Antibacterial activity of apramycin at acidic pH warrants wide therapeutic window in the treatment of complicated urinary tract infections and acute pyelonephritis
- Download full text (pdf) of Antibacterial activity of apramycin at acidic pH warrants wide therapeutic window in the treatment of complicated urinary tract infections and acute pyelonephritis
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Part of Proceedings of the National Academy of Sciences of the United States of America, 2021
- DOI for Evaluating the potential efficacy and limitations of a phage for joint antibiotic and phage therapy of Staphylococcus aureus infections
- Download full text (pdf) of Evaluating the potential efficacy and limitations of a phage for joint antibiotic and phage therapy of Staphylococcus aureus infections
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Part of Journal of Antimicrobial Chemotherapy, p. 606-615, 2021
- DOI for Mutant RNA polymerase can reduce susceptibility to antibiotics via ppGpp-independent induction of a stringent-like response
- Download full text (pdf) of Mutant RNA polymerase can reduce susceptibility to antibiotics via ppGpp-independent induction of a stringent-like response
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Part of Molecular biology and evolution, p. 1637-1646, 2020
- DOI for Population Bottlenecks Strongly Influence the Evolutionary Trajectory to Fluoroquinolone Resistance in Escherichia coli
- Download full text (pdf) of Population Bottlenecks Strongly Influence the Evolutionary Trajectory to Fluoroquinolone Resistance in Escherichia coli
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Part of Bioorganic & Medicinal Chemistry, 2020
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Part of Proceedings of the National Academy of Sciences of the United States of America, p. 3185-3191, 2020
- DOI for Antibiotic resistance by high-level intrinsic suppression of a frameshift mutation in an essential gene
- Download full text (pdf) of Antibiotic resistance by high-level intrinsic suppression of a frameshift mutation in an essential gene
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Part of Journal of Antimicrobial Chemotherapy, p. 944-952, 2019
- DOI for In vitro activity of apramycin against multidrug-, carbapenem- and aminoglycoside-resistant Enterobacteriaceae and Acinetobacter baumannii
- Download full text (pdf) of In vitro activity of apramycin against multidrug-, carbapenem- and aminoglycoside-resistant Enterobacteriaceae and Acinetobacter baumannii
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Odilorhabdins, Antibacterial Agents that Cause Miscoding by Binding at a New Ribosomal Site
Part of Molecular Cell, p. 83-94, 2018
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Part of Frontiers in Microbiology, 2018
- DOI for Muramyl Endopeptidase Spr Contributes to Intrinsic Vancomycin Resistance in Salmonella enterica Serovar Typhimurium
- Download full text (pdf) of Muramyl Endopeptidase Spr Contributes to Intrinsic Vancomycin Resistance in Salmonella enterica Serovar Typhimurium
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Methods to determine mutational trajectories after experimental evolution of antibiotic resistance.
Part of Methods in Molecular Biology, p. 95-103, 2018
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Effect of aminoacyl-tRNA synthetase mutations on susceptibility to ciprofloxacin in Escherichia coli
Part of Journal of Antimicrobial Chemotherapy, p. 3285-3292, 2018
- DOI for Effect of aminoacyl-tRNA synthetase mutations on susceptibility to ciprofloxacin in Escherichia coli
- Download full text (pdf) of Effect of aminoacyl-tRNA synthetase mutations on susceptibility to ciprofloxacin in Escherichia coli
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Part of Journal of Medicinal Chemistry, p. 3565-3581, 2018
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Mutation supply and relative fitness shape the genotypes of ciprofloxacin-resistant Escherichia coli
Part of Molecular biology and evolution, p. 1029-1039, 2017
- DOI for Mutation supply and relative fitness shape the genotypes of ciprofloxacin-resistant Escherichia coli
- Download full text (pdf) of Mutation supply and relative fitness shape the genotypes of ciprofloxacin-resistant Escherichia coli
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Early-Life Human Microbiota Associated With Childhood Allergy Promotes the T Helper 17 Axis in Mice
Part of Frontiers in Immunology, 2017
- DOI for Early-Life Human Microbiota Associated With Childhood Allergy Promotes the T Helper 17 Axis in Mice
- Download full text (pdf) of Early-Life Human Microbiota Associated With Childhood Allergy Promotes the T Helper 17 Axis in Mice
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Ciprofloxacin selects for RNA polymerase mutations with pleiotropic antibiotic resistance effects
Part of Journal of Antimicrobial Chemotherapy, p. 75-84, 2017
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Part of Bioorganic & Medicinal Chemistry, p. 897-911, 2017
- DOI for Design, synthesis and in vitro biological evaluation of oligopeptides targeting E. coli type I signal peptidase (LepB)
- Download full text (pdf) of Design, synthesis and in vitro biological evaluation of oligopeptides targeting E. coli type I signal peptidase (LepB)
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Part of Journal of Antimicrobial Chemotherapy, p. 3016-3024, 2017
- DOI for Fitness cost constrains the spectrum of marR mutations in ciprofloxacin-resistant Escherichia coli: Multiple Antibiotic-Resistance, Gram-Negative Bacteria, Multidrug Efflux Pump, Urinary-Tract-Infections, Fluoroquinolone Resistance, Quinolone Resistance, Mechanisms, Expression, Sequence, Soxs
- Download full text (pdf) of Fitness cost constrains the spectrum of marR mutations in ciprofloxacin-resistant Escherichia coli: Multiple Antibiotic-Resistance, Gram-Negative Bacteria, Multidrug Efflux Pump, Urinary-Tract-Infections, Fluoroquinolone Resistance, Quinolone Resistance, Mechanisms, Expression, Sequence, Soxs
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Part of MICROBIAL CELL, p. 275-277, 2017
- DOI for Having your cake and eating it - Staphylococcus aureus small colony variants can evolve faster growth rate without losing their antibiotic resistance
- Download full text (pdf) of Having your cake and eating it - Staphylococcus aureus small colony variants can evolve faster growth rate without losing their antibiotic resistance
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Part of mBio, 2017
- DOI for Alternative Evolutionary Pathways for Drug-Resistant Small Colony Variant Mutants in Staphylococcus aureus
- Download full text (pdf) of Alternative Evolutionary Pathways for Drug-Resistant Small Colony Variant Mutants in Staphylococcus aureus