Payam Emami

Co-exposure to PFAS and hydroxylated PCBs is associated with increased odds of multiple sclerosis

Vaivade, Aina; Parakkal Sreenivasan, Akshai; Erngren, Ida; Freyhult, Eva et al.

Part of Environment International, 2026

• DOI for Co-exposure to PFAS and hydroxylated PCBs is associated with increased odds of multiple sclerosis
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Conformal prediction enables disease course prediction and allows individualized diagnostic uncertainty in multiple sclerosis

Sreenivasan, Akshai Parakkal; Vaivade, Aina; Noui, Yassine; Emami Khoonsari, Payam et al.

Part of npj Digital Medicine, 2025

• DOI for Conformal prediction enables disease course prediction and allows individualized diagnostic uncertainty in multiple sclerosis
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Associations of PFAS and OH-PCBs with risk of multiple sclerosis onset and disability worsening

Vaivade, Aina; Erngren, Ida; Carlsson, Henrik; Freyhult, Eva et al.

Part of Nature Communications, 2025

• DOI for Associations of PFAS and OH-PCBs with risk of multiple sclerosis onset and disability worsening
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Fibromyalgia patients have altered lipid concentrations associated with disease symptom severity and anti-satellite glial cell IgG antibodies

Jakobsson, Jenny; Menezes, Joana; Krock, Emerson; Hunt, Matthew A. et al.

Part of Journal of Pain, 2025

• DOI for Fibromyalgia patients have altered lipid concentrations associated with disease symptom severity and anti-satellite glial cell IgG antibodies
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Uncemented hip arthroplasty and denosumab: increased postoperative dipeptide concentrations and identification of potential new bone turnover biomarkers

Kultima, Kim; Hosseini Ashtiani, Saman; Erngren, Ida; Emami Khoonsari, Payam et al.

Part of JBMR Plus, 2025

• DOI for Uncemented hip arthroplasty and denosumab: increased postoperative dipeptide concentrations and identification of potential new bone turnover biomarkers
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Co-exposure to PFAS and hydroxylated PCBs is associated with increased odds of multiple sclerosis

Vaivade, Aina; Parakkal Sreenivasan, Akshai; Erngren, Ida; Freyhult, Eva et al.

Part of Environment International, 2026

• DOI for Co-exposure to PFAS and hydroxylated PCBs is associated with increased odds of multiple sclerosis
• Download full text (pdf) of Co-exposure to PFAS and hydroxylated PCBs is associated with increased odds of multiple sclerosis

Conformal prediction enables disease course prediction and allows individualized diagnostic uncertainty in multiple sclerosis

Sreenivasan, Akshai Parakkal; Vaivade, Aina; Noui, Yassine; Emami Khoonsari, Payam et al.

Part of npj Digital Medicine, 2025

• DOI for Conformal prediction enables disease course prediction and allows individualized diagnostic uncertainty in multiple sclerosis
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Associations of PFAS and OH-PCBs with risk of multiple sclerosis onset and disability worsening

Vaivade, Aina; Erngren, Ida; Carlsson, Henrik; Freyhult, Eva et al.

Part of Nature Communications, 2025

• DOI for Associations of PFAS and OH-PCBs with risk of multiple sclerosis onset and disability worsening
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Fibromyalgia patients have altered lipid concentrations associated with disease symptom severity and anti-satellite glial cell IgG antibodies

Jakobsson, Jenny; Menezes, Joana; Krock, Emerson; Hunt, Matthew A. et al.

Part of Journal of Pain, 2025

• DOI for Fibromyalgia patients have altered lipid concentrations associated with disease symptom severity and anti-satellite glial cell IgG antibodies
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Uncemented hip arthroplasty and denosumab: increased postoperative dipeptide concentrations and identification of potential new bone turnover biomarkers

Kultima, Kim; Hosseini Ashtiani, Saman; Erngren, Ida; Emami Khoonsari, Payam et al.

Part of JBMR Plus, 2025

• DOI for Uncemented hip arthroplasty and denosumab: increased postoperative dipeptide concentrations and identification of potential new bone turnover biomarkers
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MIF-Modulated Spinal Proteins Associated with Persistent Bladder Pain: A Proteomics Study

Ye, Shaojing; Agalave, Nilesh M.; Ma, Fei; Mahmood, Dlovan F. D. et al.

Part of International Journal of Molecular Sciences, 2024

• DOI for MIF-Modulated Spinal Proteins Associated with Persistent Bladder Pain: A Proteomics Study
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Lumbosacral spinal proteomic changes during PAR4-induced persistent bladder pain

Ye, Shaojing; Agalave, Nilesh M.; Ma, Fei; Mahmood, Dlovan F. D. et al.

Part of Neuroscience Letters, 2024

• DOI for Lumbosacral spinal proteomic changes during PAR4-induced persistent bladder pain

Disease phenotype prediction in multiple sclerosis

Herman, Stephanie; Arvidsson McShane, Staffan; Zhukovsky, Christina; Emami, Payam et al.

Part of iScience, 2023

• DOI for Disease phenotype prediction in multiple sclerosis
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Evaluation of polarity switching for untargeted lipidomics using liquid chromatography coupled to high resolution mass spectrometry

Carlsson, Henrik; Vaivade, Aina; Emami Khoonsari, Payam; Burman, Joachim et al.

Part of Journal of chromatography. B, 2022

• DOI for Evaluation of polarity switching for untargeted lipidomics using liquid chromatography coupled to high resolution mass spectrometry
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Approaches for containerized scientific workflows in cloud environments with applications in life science

Spjuth, Ola; Capuccini, Marco; Carone, Matteo; Larsson, Anders et al.

Part of F1000 Research, p. 513-513, 2021

• DOI for Approaches for containerized scientific workflows in cloud environments with applications in life science

Metabolic drift in the aging nervous system is reflected in human cerebrospinal fluid

Peters, Kristian; Herman, Stephanie; Emami Khoonsari, Payam; Burman, Joachim et al.

Part of Scientific Reports, 2021

• DOI for Metabolic drift in the aging nervous system is reflected in human cerebrospinal fluid
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Sex-dependent role of microglia in disulfide high mobility group box 1 protein-mediated mechanical hypersensitivity

Agalave, Nilesh M.; Rudjito, Resti; Farinotti, Alex Bersellini; Emami Khoonsari, Payam et al.

Part of Pain, p. 446-458, 2021

• DOI for Sex-dependent role of microglia in disulfide high mobility group box 1 protein-mediated mechanical hypersensitivity

Increased CSF Levels of Apolipoproteins and Complement Factors in Trigeminal Neuralgia Patients-In Depth Proteomic Analysis Using Mass Spectrometry

Abu Hamdeh, Sami; Emami Khoonsari, Payam; Shevchenko, Ganna; Gordh, Torsten et al.

Part of Journal of Pain, p. 1075-1084, 2020

• DOI for Increased CSF Levels of Apolipoproteins and Complement Factors in Trigeminal Neuralgia Patients-In Depth Proteomic Analysis Using Mass Spectrometry

Targeted metabolomics of CSF in healthy individuals and patients with secondary progressive multiple sclerosis using high-resolution mass spectrometry

Carlsson, Henrik; Abujrais, Sandy; Herman, Stephanie; Emami Khoonsari, Payam et al.

Part of Metabolomics, 2020

• DOI for Targeted metabolomics of CSF in healthy individuals and patients with secondary progressive multiple sclerosis using high-resolution mass spectrometry
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Systematic Analysis of the Cerebrospinal Fluid Proteome of Fibromyalgia patients

Emami Khoonsari, Payam; Musunri, Sravani; Herman, Stephanie; Svensson, Camilla I et al.

Part of Journal of Proteomics, p. 35-43, 2019

• DOI for Systematic Analysis of the Cerebrospinal Fluid Proteome of Fibromyalgia patients

The human CSF pain proteome

Emami Khoonsari, Payam; Ossipova, Elena; Lengqvist, Johan; Svensson, Camilla et al.

Part of Journal of Proteomics, p. 67-76, 2019

• DOI for The human CSF pain proteome

Container-based bioinformatics with Pachyderm

Novella, Jon Ander; Emami Khoonsari, Payam; Herman, Stephanie; Whitenack, Daniel et al.

Part of Bioinformatics, p. 839-846, 2019

• DOI for Container-based bioinformatics with Pachyderm

PhenoMeNal: Processing and analysis of metabolomics data in the cloud

Peters, Kristian; Bradbury, James; Bergmann, Sven; Capuccini, Marco et al.

Part of GigaScience, 2019

• DOI for PhenoMeNal: Processing and analysis of metabolomics data in the cloud

Inhibition of mPGES-1 or COX-2 Results in Different Proteomic and Lipidomic Profiles in A549 Lung Cancer Cells

Bergqvist, Filip; Ossipova, Elena; Idborg, Helena; Raouf, Joan et al.

Part of Frontiers in Pharmacology, 2019

• DOI for Inhibition of mPGES-1 or COX-2 Results in Different Proteomic and Lipidomic Profiles in A549 Lung Cancer Cells
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Alterations in the tyrosine and phenylalanine pathways revealed by biochemical profiling in cerebrospinal fluid of Huntington's disease subjects

Herman, Stephanie; Niemelä, Valter; Emami Khoonsari, Payam; Sundblom, Jimmy et al.

Part of Scientific Reports, 2019

• DOI for Alterations in the tyrosine and phenylalanine pathways revealed by biochemical profiling in cerebrospinal fluid of Huntington's disease subjects
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Interoperable and scalable data analysis with microservices: Applications in metabolomics

Emami Khoonsari, Payam; Moreno, Pablo; Bergmann, Sven; Burman, Joachim et al.

Part of Bioinformatics, p. 3752-3760, 2019

• DOI for Interoperable and scalable data analysis with microservices: Applications in metabolomics
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Improved Differential Diagnosis of Alzheimer's Disease by Integrating ELISA and Mass Spectrometry-Based Cerebrospinal Fluid Biomarkers

Emami Khoonsari, Payam; Shevchenko, Ganna; Herman, Stephanie; Remnestal, Julia et al.

Part of Journal of Alzheimer's Disease, p. 639-651, 2019

• DOI for Improved Differential Diagnosis of Alzheimer's Disease by Integrating ELISA and Mass Spectrometry-Based Cerebrospinal Fluid Biomarkers
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Exploring cerebrospinal fluid proteome in fibromyalgia

Ossipova, E.; Emami Khoonsari, Payam; Lengqvist, J.; Kosek, Eva et al.

Part of Annals of the Rheumatic Diseases, p. 1643-1644, 2018

• DOI for Exploring cerebrospinal fluid proteome in fibromyalgia

Integration of magnetic resonance imaging and protein and metabolite CSF measurements to enable early diagnosis of secondary progressive multiple sclerosis.

Herman, Stephanie; Emami Khoonsari, Payam; Tolf, Andreas; Steinmetz, Julia et al.

Part of Theranostics, p. 4477-4490, 2018

• DOI for Integration of magnetic resonance imaging and protein and metabolite CSF measurements to enable early diagnosis of secondary progressive multiple sclerosis.
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Spinal injection of newly identified cerebellin-1 and cerebellin-2 peptides induce mechanical hypersensitivity in mice

Sandor, Katalin; Krishnan, Shibu; Agalave, Nilesh Mohan; Krock, Emerson et al.

Part of Neuropeptides, p. 53-59, 2018

• DOI for Spinal injection of newly identified cerebellin-1 and cerebellin-2 peptides induce mechanical hypersensitivity in mice

Low molar excess of 4-oxo-2-nonenal and 4-hydroxy-2-nonenal promote oligomerization of alpha-synuclein through different pathways

Almandoz-Gil, Leire; Welander, Hedvig; Ihse, Elisabet; Khoonsari, Payam Emami et al.

Part of Free Radical Biology & Medicine, p. 421-431, 2017

• DOI for Low molar excess of 4-oxo-2-nonenal and 4-hydroxy-2-nonenal promote oligomerization of alpha-synuclein through different pathways
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Increased Release of Apolipoprotein E in Extracellular Vesicles Following Amyloid-β Protofibril Exposure of Neuroglial Co-Cultures

Nikitidou, Elisabeth; Emami Khoonsari, Payam; Shevchenko, Ganna; Ingelsson, Martin et al.

Part of Journal of Alzheimer's Disease, p. 305-321, 2017

• DOI for Increased Release of Apolipoprotein E in Extracellular Vesicles Following Amyloid-β Protofibril Exposure of Neuroglial Co-Cultures
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Mass spectrometry based metabolomics for in vitro systems pharmacology: pitfalls, challenges, and computational solutions.

Herman, Stephanie; Emami Khoonsari, Payam; Aftab, Obaid; Krishnan, Shibu et al.

Part of Metabolomics, 2017

• DOI for Mass spectrometry based metabolomics for in vitro systems pharmacology: pitfalls, challenges, and computational solutions.
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Spinal Cord Stimulation Alters Protein Levels in the Cerebrospinal Fluid of Neuropathic Pain Patients: A Proteomic Mass Spectrometric Analysis

Lind, Anne-Li; Emami Khoonsari, Payam; Sjödin, Marcus; Katila, Lenka et al.

Part of Neuromodulation, p. 549-562, 2016

• DOI for Spinal Cord Stimulation Alters Protein Levels in the Cerebrospinal Fluid of Neuropathic Pain Patients: A Proteomic Mass Spectrometric Analysis

Analysis of the Cerebrospinal Fluid Proteome in Alzheimer's Disease

Emami Khoonsari, Payam; Haggmark, Anna; Lönnberg, Maria; Mikus, Maria et al.

Part of PLOS ONE, 2016

• DOI for Analysis of the Cerebrospinal Fluid Proteome in Alzheimer's Disease
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Increased levels of extracellular microvesicle markers and decreased levels of endocytic/exocytic proteins in the Alzheimer’s disease brain

Sravani, Musunuri; Emami Khoonsari, Payam; Mikus, Maria; Wetterhall, Magnus et al.

Part of Journal of Alzheimer's Disease, p. 1671-1686, 2016

• DOI for Increased levels of extracellular microvesicle markers and decreased levels of endocytic/exocytic proteins in the Alzheimer’s disease brain

Proteomics Studies of Subjects with Alzheimer’s Disease and Chronic Pain

Emami Khoonsari, Payam

2017

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Chitinase-3-like protein 1 (CH3L1) and Neurosecretory protein VGF (VGF) as two novel CSF biomarker candidates for improved diagnostics in Alzheimer’s disease

Emami Khoonsari, Payam; Shevchenko, Ganna; Herman, Stephanie; Musunuri, Sravani et al.

A biochemical signature of progressive multiple sclerosis

Herman, Stephanie; Emami Khoonsari, Payam; Bergman, Joakim; Svenningsson, Anders et al.

PFAS and OH-PCB Exposure is Associated with an Altered Bile Acid Homeostasis in Multiple Sclerosis

Vaivade, Aina; Erngren, Ida; Freyhult, Eva; Emami Khoonsari, Payam et al.