Payam Emami

Fibromyalgia patients have altered lipid concentrations associated with disease symptom severity and anti-satellite glial cell IgG antibodies

Jakobsson, Jenny; Menezes, Joana; Krock, Emerson; Hunt, Matthew A. et al.

Part of Journal of Pain, 2025

• DOI for Fibromyalgia patients have altered lipid concentrations associated with disease symptom severity and anti-satellite glial cell IgG antibodies
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Conformal prediction enables disease course prediction and allows individualized diagnostic uncertainty in multiple sclerosis

Sreenivasan, Akshai Parakkal; Vaivade, Aina; Noui, Yassine; Emami Khoonsari, Payam et al.

Part of npj Digital Medicine, 2025

• DOI for Conformal prediction enables disease course prediction and allows individualized diagnostic uncertainty in multiple sclerosis
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Associations of PFAS and OH-PCBs with risk of multiple sclerosis onset and disability worsening

Vaivade, Aina; Erngren, Ida; Carlsson, Henrik; Freyhult, Eva et al.

Part of Nature Communications, 2025

• DOI for Associations of PFAS and OH-PCBs with risk of multiple sclerosis onset and disability worsening
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MIF-Modulated Spinal Proteins Associated with Persistent Bladder Pain: A Proteomics Study

Ye, Shaojing; Agalave, Nilesh M.; Ma, Fei; Mahmood, Dlovan F. D. et al.

Part of International Journal of Molecular Sciences, 2024

• DOI for MIF-Modulated Spinal Proteins Associated with Persistent Bladder Pain: A Proteomics Study
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Lumbosacral spinal proteomic changes during PAR4-induced persistent bladder pain

Ye, Shaojing; Agalave, Nilesh M.; Ma, Fei; Mahmood, Dlovan F. D. et al.

Part of Neuroscience Letters, 2024

• DOI for Lumbosacral spinal proteomic changes during PAR4-induced persistent bladder pain

Fibromyalgia patients have altered lipid concentrations associated with disease symptom severity and anti-satellite glial cell IgG antibodies

Jakobsson, Jenny; Menezes, Joana; Krock, Emerson; Hunt, Matthew A. et al.

Part of Journal of Pain, 2025

• DOI for Fibromyalgia patients have altered lipid concentrations associated with disease symptom severity and anti-satellite glial cell IgG antibodies
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Conformal prediction enables disease course prediction and allows individualized diagnostic uncertainty in multiple sclerosis

Sreenivasan, Akshai Parakkal; Vaivade, Aina; Noui, Yassine; Emami Khoonsari, Payam et al.

Part of npj Digital Medicine, 2025

• DOI for Conformal prediction enables disease course prediction and allows individualized diagnostic uncertainty in multiple sclerosis
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Associations of PFAS and OH-PCBs with risk of multiple sclerosis onset and disability worsening

Vaivade, Aina; Erngren, Ida; Carlsson, Henrik; Freyhult, Eva et al.

Part of Nature Communications, 2025

• DOI for Associations of PFAS and OH-PCBs with risk of multiple sclerosis onset and disability worsening
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MIF-Modulated Spinal Proteins Associated with Persistent Bladder Pain: A Proteomics Study

Ye, Shaojing; Agalave, Nilesh M.; Ma, Fei; Mahmood, Dlovan F. D. et al.

Part of International Journal of Molecular Sciences, 2024

• DOI for MIF-Modulated Spinal Proteins Associated with Persistent Bladder Pain: A Proteomics Study
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Lumbosacral spinal proteomic changes during PAR4-induced persistent bladder pain

Ye, Shaojing; Agalave, Nilesh M.; Ma, Fei; Mahmood, Dlovan F. D. et al.

Part of Neuroscience Letters, 2024

• DOI for Lumbosacral spinal proteomic changes during PAR4-induced persistent bladder pain

Disease phenotype prediction in multiple sclerosis

Herman, Stephanie; Arvidsson McShane, Staffan; Zhukovsky, Christina; Emami, Payam et al.

Part of iScience, 2023

• DOI for Disease phenotype prediction in multiple sclerosis
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Evaluation of polarity switching for untargeted lipidomics using liquid chromatography coupled to high resolution mass spectrometry

Carlsson, Henrik; Vaivade, Aina; Emami Khoonsari, Payam; Burman, Joachim et al.

Part of Journal of chromatography. B, 2022

• DOI for Evaluation of polarity switching for untargeted lipidomics using liquid chromatography coupled to high resolution mass spectrometry
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Approaches for containerized scientific workflows in cloud environments with applications in life science

Spjuth, Ola; Capuccini, Marco; Carone, Matteo; Larsson, Anders et al.

Part of F1000 Research, p. 513-513, 2021

• DOI for Approaches for containerized scientific workflows in cloud environments with applications in life science

Metabolic drift in the aging nervous system is reflected in human cerebrospinal fluid

Peters, Kristian; Herman, Stephanie; Emami Khoonsari, Payam; Burman, Joachim et al.

Part of Scientific Reports, 2021

• DOI for Metabolic drift in the aging nervous system is reflected in human cerebrospinal fluid
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Sex-dependent role of microglia in disulfide high mobility group box 1 protein-mediated mechanical hypersensitivity

Agalave, Nilesh M.; Rudjito, Resti; Farinotti, Alex Bersellini; Emami Khoonsari, Payam et al.

Part of Pain, p. 446-458, 2021

• DOI for Sex-dependent role of microglia in disulfide high mobility group box 1 protein-mediated mechanical hypersensitivity

Increased CSF Levels of Apolipoproteins and Complement Factors in Trigeminal Neuralgia Patients-In Depth Proteomic Analysis Using Mass Spectrometry

Abu Hamdeh, Sami; Emami Khoonsari, Payam; Shevchenko, Ganna; Gordh, Torsten et al.

Part of Journal of Pain, p. 1075-1084, 2020

• DOI for Increased CSF Levels of Apolipoproteins and Complement Factors in Trigeminal Neuralgia Patients-In Depth Proteomic Analysis Using Mass Spectrometry

Targeted metabolomics of CSF in healthy individuals and patients with secondary progressive multiple sclerosis using high-resolution mass spectrometry

Carlsson, Henrik; Abujrais, Sandy; Herman, Stephanie; Emami Khoonsari, Payam et al.

Part of Metabolomics, 2020

• DOI for Targeted metabolomics of CSF in healthy individuals and patients with secondary progressive multiple sclerosis using high-resolution mass spectrometry
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Systematic Analysis of the Cerebrospinal Fluid Proteome of Fibromyalgia patients

Emami Khoonsari, Payam; Musunri, Sravani; Herman, Stephanie; Svensson, Camilla I et al.

Part of Journal of Proteomics, p. 35-43, 2019

• DOI for Systematic Analysis of the Cerebrospinal Fluid Proteome of Fibromyalgia patients

The human CSF pain proteome

Emami Khoonsari, Payam; Ossipova, Elena; Lengqvist, Johan; Svensson, Camilla et al.

Part of Journal of Proteomics, p. 67-76, 2019

• DOI for The human CSF pain proteome

Container-based bioinformatics with Pachyderm

Novella, Jon Ander; Emami Khoonsari, Payam; Herman, Stephanie; Whitenack, Daniel et al.

Part of Bioinformatics, p. 839-846, 2019

• DOI for Container-based bioinformatics with Pachyderm

PhenoMeNal: Processing and analysis of metabolomics data in the cloud

Peters, Kristian; Bradbury, James; Bergmann, Sven; Capuccini, Marco et al.

Part of GigaScience, 2019

• DOI for PhenoMeNal: Processing and analysis of metabolomics data in the cloud

Inhibition of mPGES-1 or COX-2 Results in Different Proteomic and Lipidomic Profiles in A549 Lung Cancer Cells

Bergqvist, Filip; Ossipova, Elena; Idborg, Helena; Raouf, Joan et al.

Part of Frontiers in Pharmacology, 2019

• DOI for Inhibition of mPGES-1 or COX-2 Results in Different Proteomic and Lipidomic Profiles in A549 Lung Cancer Cells
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Alterations in the tyrosine and phenylalanine pathways revealed by biochemical profiling in cerebrospinal fluid of Huntington's disease subjects

Herman, Stephanie; Niemelä, Valter; Emami Khoonsari, Payam; Sundblom, Jimmy et al.

Part of Scientific Reports, 2019

• DOI for Alterations in the tyrosine and phenylalanine pathways revealed by biochemical profiling in cerebrospinal fluid of Huntington's disease subjects
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Interoperable and scalable data analysis with microservices: Applications in metabolomics

Emami Khoonsari, Payam; Moreno, Pablo; Bergmann, Sven; Burman, Joachim et al.

Part of Bioinformatics, p. 3752-3760, 2019

• DOI for Interoperable and scalable data analysis with microservices: Applications in metabolomics
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Improved Differential Diagnosis of Alzheimer's Disease by Integrating ELISA and Mass Spectrometry-Based Cerebrospinal Fluid Biomarkers

Emami Khoonsari, Payam; Shevchenko, Ganna; Herman, Stephanie; Remnestal, Julia et al.

Part of Journal of Alzheimer's Disease, p. 639-651, 2019

• DOI for Improved Differential Diagnosis of Alzheimer's Disease by Integrating ELISA and Mass Spectrometry-Based Cerebrospinal Fluid Biomarkers
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Exploring cerebrospinal fluid proteome in fibromyalgia

Ossipova, E.; Emami Khoonsari, Payam; Lengqvist, J.; Kosek, Eva et al.

Part of Annals of the Rheumatic Diseases, p. 1643-1644, 2018

• DOI for Exploring cerebrospinal fluid proteome in fibromyalgia

Integration of magnetic resonance imaging and protein and metabolite CSF measurements to enable early diagnosis of secondary progressive multiple sclerosis.

Herman, Stephanie; Emami Khoonsari, Payam; Tolf, Andreas; Steinmetz, Julia et al.

Part of Theranostics, p. 4477-4490, 2018

• DOI for Integration of magnetic resonance imaging and protein and metabolite CSF measurements to enable early diagnosis of secondary progressive multiple sclerosis.
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Spinal injection of newly identified cerebellin-1 and cerebellin-2 peptides induce mechanical hypersensitivity in mice

Sandor, Katalin; Krishnan, Shibu; Agalave, Nilesh Mohan; Krock, Emerson et al.

Part of Neuropeptides, p. 53-59, 2018

• DOI for Spinal injection of newly identified cerebellin-1 and cerebellin-2 peptides induce mechanical hypersensitivity in mice

Low molar excess of 4-oxo-2-nonenal and 4-hydroxy-2-nonenal promote oligomerization of alpha-synuclein through different pathways

Almandoz-Gil, Leire; Welander, Hedvig; Ihse, Elisabet; Khoonsari, Payam Emami et al.

Part of Free Radical Biology & Medicine, p. 421-431, 2017

• DOI for Low molar excess of 4-oxo-2-nonenal and 4-hydroxy-2-nonenal promote oligomerization of alpha-synuclein through different pathways
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Increased Release of Apolipoprotein E in Extracellular Vesicles Following Amyloid-β Protofibril Exposure of Neuroglial Co-Cultures

Nikitidou, Elisabeth; Emami Khoonsari, Payam; Shevchenko, Ganna; Ingelsson, Martin et al.

Part of Journal of Alzheimer's Disease, p. 305-321, 2017

• DOI for Increased Release of Apolipoprotein E in Extracellular Vesicles Following Amyloid-β Protofibril Exposure of Neuroglial Co-Cultures
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Mass spectrometry based metabolomics for in vitro systems pharmacology: pitfalls, challenges, and computational solutions.

Herman, Stephanie; Emami Khoonsari, Payam; Aftab, Obaid; Krishnan, Shibu et al.

Part of Metabolomics, 2017

• DOI for Mass spectrometry based metabolomics for in vitro systems pharmacology: pitfalls, challenges, and computational solutions.
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Spinal Cord Stimulation Alters Protein Levels in the Cerebrospinal Fluid of Neuropathic Pain Patients: A Proteomic Mass Spectrometric Analysis

Lind, Anne-Li; Emami Khoonsari, Payam; Sjödin, Marcus; Katila, Lenka et al.

Part of Neuromodulation, p. 549-562, 2016

• DOI for Spinal Cord Stimulation Alters Protein Levels in the Cerebrospinal Fluid of Neuropathic Pain Patients: A Proteomic Mass Spectrometric Analysis

Analysis of the Cerebrospinal Fluid Proteome in Alzheimer's Disease

Emami Khoonsari, Payam; Haggmark, Anna; Lönnberg, Maria; Mikus, Maria et al.

Part of PLOS ONE, 2016

• DOI for Analysis of the Cerebrospinal Fluid Proteome in Alzheimer's Disease
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Increased levels of extracellular microvesicle markers and decreased levels of endocytic/exocytic proteins in the Alzheimer’s disease brain

Sravani, Musunuri; Emami Khoonsari, Payam; Mikus, Maria; Wetterhall, Magnus et al.

Part of Journal of Alzheimer's Disease, p. 1671-1686, 2016

• DOI for Increased levels of extracellular microvesicle markers and decreased levels of endocytic/exocytic proteins in the Alzheimer’s disease brain

Proteomics Studies of Subjects with Alzheimer’s Disease and Chronic Pain

Emami Khoonsari, Payam

2017

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Chitinase-3-like protein 1 (CH3L1) and Neurosecretory protein VGF (VGF) as two novel CSF biomarker candidates for improved diagnostics in Alzheimer’s disease

Emami Khoonsari, Payam; Shevchenko, Ganna; Herman, Stephanie; Musunuri, Sravani et al.

A biochemical signature of progressive multiple sclerosis

Herman, Stephanie; Emami Khoonsari, Payam; Bergman, Joakim; Svenningsson, Anders et al.