Douglas Scofield
Bioinformatician at Department of Ecology and Genetics; Evolutionary Biology
- Telephone:
- +46 18 471 64 62
- E-mail:
- Douglas.Scofield@ebc.uu.se
- Visiting address:
- Evolutionsbiologiskt Centrum
Norbyvägen 18D
752 36 UPPSALA - Postal address:
- Evolutionsbiologiskt centrum
Norbyvägen 18D
752 36 UPPSALA
Application expert at Department of Information Technology; Uppsala Multidisciplinary Centre for Advanced Computational Science
- Telephone:
- +46 18 471 64 62
- E-mail:
- douglas.scofield@uppmax.uu.se
- Visiting address:
- Hus 10, Lägerhyddsvägen 1
- Postal address:
- Box 337
751 05 Uppsala
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Publications
Recent publications
- A chromosome-level assembly of the seed beetle Callosobruchus maculatus genome with annotation of its repetitive elements (2024)
- Calling Structural Variants with Confidence from Short-Read Data in Wild Bird Populations (2024)
- Germline mutation rate is elevated in young and old parents in Caenorhabditis remanei (2023)
- QTL mapping of the narrow-branch "Pendula" phenotype in Norway spruce (Picea abies L. Karst.) (2023)
- Y-Linked Copy Number Polymorphism of Target of Rapamycin Is Associated with Sexual Size Dimorphism in Seed Beetles (2023)
All publications
Articles
- A chromosome-level assembly of the seed beetle Callosobruchus maculatus genome with annotation of its repetitive elements (2024)
- Calling Structural Variants with Confidence from Short-Read Data in Wild Bird Populations (2024)
- Germline mutation rate is elevated in young and old parents in Caenorhabditis remanei (2023)
- QTL mapping of the narrow-branch "Pendula" phenotype in Norway spruce (Picea abies L. Karst.) (2023)
- Y-Linked Copy Number Polymorphism of Target of Rapamycin Is Associated with Sexual Size Dimorphism in Seed Beetles (2023)
- Selection on Accessible Chromatin Regions in Capsella grandiflora (2021)
- Khoe-San Genomes Reveal Unique Variation and Confirm the Deepest Population Divergence in Homo sapiens (2020)
- Genome-wide association study identified novel candidate loci affecting wood formation in Norway spruce (2019)
- An Ultra-Dense Haploid Genetic Map for Evaluating the Highly Fragmented Genome Assembly of Norway Spruce (Picea abies) (2019)
- Summer comes to the Southern Ocean (2019)
- Bacteria colonising Penstemon digitalis show volatile and tissue-specific responses to a natural concentration range of the floral volatile linalool (2018)
- Tracking the NGS revolution (2018)
- Functional and evolutionary genomic inferences in Populus through genome and population sequencing of American and European aspen (2018)
- Sharing of photobionts in sympatric populations of Thamnolia and Cetraria lichens (2018)
- A major locus controls local adaptation and adaptive life history variation in a perennial plant (2018)
- RPASE (2018)
- Haploid selection within a single ejaculate increases offspring fitness (2017)
- LTR Retrotransposons Show Low Levels of Unequal Recombination and High Rates of Intraelement Gene Conversion in Large Plant Genomes (2017)
- Genomic analysis reveals major determinants of cis-regulatory variation in Capsella grandiflora (2017)
- Tuning fresh (2016)
- DNA-metabarcoding uncovers the diversity of soil-inhabiting fungi in the tropical island of Puerto Rico (2016)
- Natural Selection and Recombination Rate Variation Shape Nucleotide Polymorphism Across the Genomes of Three Related Populus Species (2016)
- Variation in Linked Selection and Recombination Drive Genomic Divergence during Allopatric Speciation of European and American Aspens (2016)
- Impact of asymmetric male and female gamete dispersal on allelic diversity and spatial genetic structure in valley oak (Quercus lobata Nee) (2015)
- Cis-Regulatory Changes Associated with a Recent Mating System Shift and Floral Adaptation in Capsella (2015)
- The Ty1-copia LTR retroelement family PARTC is highly conserved in conifers over 200 MY of evolution (2015)
- A definitive demonstration of fitness effects due to somatic mutation in a plant (2014)
- What seeds tell us about birds (2014)
- Coefficients of Conservatism Values and the Floristic Quality Index for the vascular plants of south Florida (2012)
- Use of Alpha, Beta, and Gamma Diversity Measures to Characterize Seed Dispersal by Animals (2012)
- Using Seedling and Pericarp Tissues to Determine Maternal Parentage of Dispersed Valley Oak Recruits (2012)
- When sounds collide (2011)
- Foraging patterns of acorn woodpeckers (Melanerpes formicivorus) on valley oak (Quercus lobata N,e) in two California oak savanna-woodlands (2011)
- Influence of acorn woodpecker social behaviour on transport of coast live oak (Quercus agrifolia) acorns in a southern California oak savanna (2010)
- Endogenous Mechanisms for the Origins of Spliceosomal Introns (2009)
- Intron presence-absence polymorphisms in Daphnia (2008)
- Evolutionary Diversification of the Sm Family of RNA-Associated Proteins (2008)
- Position of the final intron in full-length transcripts (2007)
- Intron size, abundance, and distribution within untranslated regions of genes (2006)
- Medial pith cells per meter in twigs as a proxy for mitotic growth rate (Phi/m) in the apical meristem (2006)
- Mitosis, stature and evolution of plant mating systems (2006)
- The evolution of transcription-initiation sites (2005)
- The combination of HiFi and HiC sequencing technologies enables the investigation of structural variants in speciation of Ficedula flycatchers
- Contribution of ecdysone signaling to photoperiodic wing polyphenism in the water strider Gerris buenoi
- Assembly of polymorphic Y chromosomes reveals molecular basis of variation in male body size
- Genetic structure and diversity of the declining orchid Gymnadenia conopsea in Scandinavia: implications for conservation and management
Chapters
