Douglas Scofield

Genetic structure and diversity of the declining orchid Gymnadenia conopsea in Scandinavia: implications for conservation and management

Söderquist, Linus; Joffard, Nina; Scofield, Douglas; Milesi, Pascal et al.

Part of Ecography, 2025

• DOI for Genetic structure and diversity of the declining orchid Gymnadenia conopsea in Scandinavia: implications for conservation and management
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Calling Structural Variants with Confidence from Short-Read Data in Wild Bird Populations

David, Gabriel; Bertolotti, Alicia; Layer, Ryan; Scofield, Douglas et al.

Part of Genome Biology and Evolution, 2024

• DOI for Calling Structural Variants with Confidence from Short-Read Data in Wild Bird Populations
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A chromosome-level assembly of the seed beetle Callosobruchus maculatus genome with annotation of its repetitive elements

Arnqvist, Göran; Westerberg, Ivar; Galbraith, James; Sayadi, Ahmed et al.

Part of G3, 2024

• DOI for A chromosome-level assembly of the seed beetle Callosobruchus maculatus genome with annotation of its repetitive elements
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Y-Linked Copy Number Polymorphism of Target of Rapamycin Is Associated with Sexual Size Dimorphism in Seed Beetles

Kaufmann, Philipp; Wiberg, R. Axel W.; Papachristos, Konstantinos; Scofield, Douglas et al.

Part of Molecular biology and evolution, 2023

• DOI for Y-Linked Copy Number Polymorphism of Target of Rapamycin Is Associated with Sexual Size Dimorphism in Seed Beetles
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QTL mapping of the narrow-branch "Pendula" phenotype in Norway spruce (Picea abies L. Karst.)

Gil-Munoz, Francisco; Bernhardsson, Carolina; Ranade, Sonali Sachin; Scofield, Douglas et al.

Part of Tree Genetics & Genomes, 2023

• DOI for QTL mapping of the narrow-branch "Pendula" phenotype in Norway spruce (Picea abies L. Karst.)
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Genetic structure and diversity of the declining orchid Gymnadenia conopsea in Scandinavia: implications for conservation and management

Söderquist, Linus; Joffard, Nina; Scofield, Douglas; Milesi, Pascal et al.

Part of Ecography, 2025

• DOI for Genetic structure and diversity of the declining orchid Gymnadenia conopsea in Scandinavia: implications for conservation and management
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Calling Structural Variants with Confidence from Short-Read Data in Wild Bird Populations

David, Gabriel; Bertolotti, Alicia; Layer, Ryan; Scofield, Douglas et al.

Part of Genome Biology and Evolution, 2024

• DOI for Calling Structural Variants with Confidence from Short-Read Data in Wild Bird Populations
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A chromosome-level assembly of the seed beetle Callosobruchus maculatus genome with annotation of its repetitive elements

Arnqvist, Göran; Westerberg, Ivar; Galbraith, James; Sayadi, Ahmed et al.

Part of G3, 2024

• DOI for A chromosome-level assembly of the seed beetle Callosobruchus maculatus genome with annotation of its repetitive elements
• Download full text (pdf) of A chromosome-level assembly of the seed beetle Callosobruchus maculatus genome with annotation of its repetitive elements

Y-Linked Copy Number Polymorphism of Target of Rapamycin Is Associated with Sexual Size Dimorphism in Seed Beetles

Kaufmann, Philipp; Wiberg, R. Axel W.; Papachristos, Konstantinos; Scofield, Douglas et al.

Part of Molecular biology and evolution, 2023

• DOI for Y-Linked Copy Number Polymorphism of Target of Rapamycin Is Associated with Sexual Size Dimorphism in Seed Beetles
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QTL mapping of the narrow-branch "Pendula" phenotype in Norway spruce (Picea abies L. Karst.)

Gil-Munoz, Francisco; Bernhardsson, Carolina; Ranade, Sonali Sachin; Scofield, Douglas et al.

Part of Tree Genetics & Genomes, 2023

• DOI for QTL mapping of the narrow-branch "Pendula" phenotype in Norway spruce (Picea abies L. Karst.)
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Germline mutation rate is elevated in young and old parents in Caenorhabditis remanei

Chen, Hwei-yen; Krieg, Therese; Mautz, Brian; Jolly, Cecile et al.

Part of Evolution Letters, p. 478-489, 2023

• DOI for Germline mutation rate is elevated in young and old parents in Caenorhabditis remanei
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Selection on Accessible Chromatin Regions in Capsella grandiflora

Horvath, Robert; Josephs, Emily B.; Pesquet, Edouard; Stinchcombe, John R. et al.

Part of Molecular biology and evolution, p. 5563-5575, 2021

• DOI for Selection on Accessible Chromatin Regions in Capsella grandiflora
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Khoe-San Genomes Reveal Unique Variation and Confirm the Deepest Population Divergence in Homo sapiens

Schlebusch, Carina; Sjödin, Per; Breton, Gwenna; Günther, Torsten et al.

Part of Molecular biology and evolution, p. 2944-2954, 2020

• DOI for Khoe-San Genomes Reveal Unique Variation and Confirm the Deepest Population Divergence in Homo sapiens
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An Ultra-Dense Haploid Genetic Map for Evaluating the Highly Fragmented Genome Assembly of Norway Spruce (Picea abies)

Bernhardsson, Carolina; Vidalis, Amaryllis; Wang, Xi; Scofield, Douglas et al.

Part of G3, p. 1623-1632, 2019

• DOI for An Ultra-Dense Haploid Genetic Map for Evaluating the Highly Fragmented Genome Assembly of Norway Spruce (Picea abies)

Genome-wide association study identified novel candidate loci affecting wood formation in Norway spruce

Baison, John; Vidalis, Amaryllis; Zhou, Linghua; Chen, Zhi-Qiang et al.

Part of The Plant Journal, p. 83-100, 2019

• DOI for Genome-wide association study identified novel candidate loci affecting wood formation in Norway spruce

Summer comes to the Southern Ocean: How phytoplankton shape bacterioplankton communities far into the deep dark sea

Richert, Inga; Yager, Patricia L.; Dinasquet, Julie; Logares, Ramiro et al.

Part of Ecosphere, 2019

• DOI for Summer comes to the Southern Ocean: How phytoplankton shape bacterioplankton communities far into the deep dark sea

Functional and evolutionary genomic inferences in Populus through genome and population sequencing of American and European aspen

Lin, Yao-Cheng; Wang, Jing; Delhomme, Nicolas; Schiffthaler, Bastian et al.

Part of Proceedings of the National Academy of Sciences of the United States of America, 2018

• DOI for Functional and evolutionary genomic inferences in Populus through genome and population sequencing of American and European aspen
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A major locus controls local adaptation and adaptive life history variation in a perennial plant

Wang, Jing; Ding, Jihua; Tan, Biyue; Robinson, Kathryn M. et al.

Part of Genome Biology, 2018

• DOI for A major locus controls local adaptation and adaptive life history variation in a perennial plant

Sharing of photobionts in sympatric populations of Thamnolia and Cetraria lichens: evidence from high-throughput sequencing

Onuţ-Brännström, Ioana; Benjamin, Mitchell; Scofield, Douglas G.; Starri, Heiðmarsson et al.

Part of Scientific Reports, 2018

• DOI for Sharing of photobionts in sympatric populations of Thamnolia and Cetraria lichens: evidence from high-throughput sequencing
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Tracking the NGS revolution: managing life science research on shared high-performance computing clusters

Dahlö, Martin; Scofield, Douglas; Schaal, Wesley; Spjuth, Ola

Part of GigaScience, 2018

• DOI for Tracking the NGS revolution: managing life science research on shared high-performance computing clusters
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Bacteria colonising Penstemon digitalis show volatile and tissue-specific responses to a natural concentration range of the floral volatile linalool

Burdon, Rosalie C. F.; Junker, Robert R.; Scofield, Douglas; Parachnowitsch, Amy L.

Part of Chemoecology, p. 11-19, 2018

• DOI for Bacteria colonising Penstemon digitalis show volatile and tissue-specific responses to a natural concentration range of the floral volatile linalool

RPASE: Individual-based allele-specific expression detection without prior knowledge of haplotype phase

Wang, Mi; Uebbing, Severin; Pawitan, Yudi; Scofield, Douglas G.

Part of Molecular Ecology Resources, p. 1247-1262, 2018

• DOI for RPASE: Individual-based allele-specific expression detection without prior knowledge of haplotype phase

Genomic analysis reveals major determinants of cis-regulatory variation in Capsella grandiflora

Steige, Kim A.; Laenen, Benjamin; Reimegård, Johan; Scofield, Douglas G. et al.

Part of Proceedings of the National Academy of Sciences of the United States of America, p. 1087-1092, 2017

• DOI for Genomic analysis reveals major determinants of cis-regulatory variation in Capsella grandiflora

LTR Retrotransposons Show Low Levels of Unequal Recombination and High Rates of Intraelement Gene Conversion in Large Plant Genomes

Cossu, Rosa Maria; Casola, Claudio; Giacomello, Stefania; Vidalis, Amaryllis et al.

Part of Genome Biology and Evolution, p. 3449-3462, 2017

• DOI for LTR Retrotransposons Show Low Levels of Unequal Recombination and High Rates of Intraelement Gene Conversion in Large Plant Genomes

Haploid selection within a single ejaculate increases offspring fitness

Alavioon, Ghazal; Hotzy, Cosima; Nakhro, Khriezhanuo; Rudolf, Sandra et al.

Part of Proceedings of the National Academy of Sciences of the United States of America, p. 8053-8058, 2017

• DOI for Haploid selection within a single ejaculate increases offspring fitness

Variation in Linked Selection and Recombination Drive Genomic Divergence during Allopatric Speciation of European and American Aspens

Wang, Jing; Street, Nathaniel R.; Scofield, Douglas G.; Ingvarsson, Par K.

Part of Molecular biology and evolution, p. 1754-1767, 2016

• DOI for Variation in Linked Selection and Recombination Drive Genomic Divergence during Allopatric Speciation of European and American Aspens
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Tuning fresh: radiation through rewiring of central metabolism in streamlined bacteria

Eiler, Alexander; Mondav, Rhiannon; Sinclair, Lucas; Fernandez-Vidal, Leyden et al.

Part of The ISME Journal, p. 1902-1914, 2016

• DOI for Tuning fresh: radiation through rewiring of central metabolism in streamlined bacteria

DNA-metabarcoding uncovers the diversity of soil-inhabiting fungi in the tropical island of Puerto Rico

Urbina, Hector; Scofield, Douglas G.; Cafaro, Matias; Rosling, Anna

Part of Mycoscience, p. 217-227, 2016

• DOI for DNA-metabarcoding uncovers the diversity of soil-inhabiting fungi in the tropical island of Puerto Rico

Natural Selection and Recombination Rate Variation Shape Nucleotide Polymorphism Across the Genomes of Three Related Populus Species

Wang, Jing; Street, Nathaniel R.; Scofield, Douglas G.; Ingvarsson, Par K.

Part of Genetics, p. 1185-1200, 2016

• DOI for Natural Selection and Recombination Rate Variation Shape Nucleotide Polymorphism Across the Genomes of Three Related Populus Species
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The Ty1-copia LTR retroelement family PARTC is highly conserved in conifers over 200 MY of evolution

Zuccolo, Andrea; Scofield, Douglas G.; De Paoli, Emanuele; Morgante, Michele

Part of Gene, p. 89-99, 2015

• DOI for The Ty1-copia LTR retroelement family PARTC is highly conserved in conifers over 200 MY of evolution

Cis-Regulatory Changes Associated with a Recent Mating System Shift and Floral Adaptation in Capsella

Steige, Kim A.; Reimegård, Johan; Koenig, Daniel; Scofield, Douglas G. et al.

Part of Molecular biology and evolution, p. 2501-2514, 2015

• DOI for Cis-Regulatory Changes Associated with a Recent Mating System Shift and Floral Adaptation in Capsella
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Impact of asymmetric male and female gamete dispersal on allelic diversity and spatial genetic structure in valley oak (Quercus lobata Nee)

Sork, Victoria L.; Smouse, Peter E.; Grivet, Delphine; Scofield, Douglas G.

Part of Evolutionary Ecology, p. 927-945, 2015

• DOI for Impact of asymmetric male and female gamete dispersal on allelic diversity and spatial genetic structure in valley oak (Quercus lobata Nee)

A definitive demonstration of fitness effects due to somatic mutation in a plant

Scofield, Douglas G.

Part of Heredity, p. 361-362, 2014

• DOI for A definitive demonstration of fitness effects due to somatic mutation in a plant

What seeds tell us about birds: A multi-year analysis of acorn woodpecker foraging movements

Thompson, Pamela G.; Scofield, Douglas; Sork, Victoria

Part of Movement Ecology, p. 12, 2014

• DOI for What seeds tell us about birds: A multi-year analysis of acorn woodpecker foraging movements
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Using Seedling and Pericarp Tissues to Determine Maternal Parentage of Dispersed Valley Oak Recruits

Smouse, Peter E.; Sork, Victoria L.; Scofield, Douglas G.; Grivet, Delphine

Part of Journal of Heredity, p. 250-259, 2012

• DOI for Using Seedling and Pericarp Tissues to Determine Maternal Parentage of Dispersed Valley Oak Recruits

Coefficients of Conservatism Values and the Floristic Quality Index for the vascular plants of south Florida

Mortellaro, Steve; Barry, Mike; Gann, George; Zahina, John et al.

Part of Southeastern naturalist (Steuben, Me.), p. 1-62, 2012

• DOI for Coefficients of Conservatism Values and the Floristic Quality Index for the vascular plants of south Florida

Use of Alpha, Beta, and Gamma Diversity Measures to Characterize Seed Dispersal by Animals

Scofield, Douglas; Smouse, Peter E.; Karubian, Jordan; Sork, Victoria L.

Part of American Naturalist, p. 719-732, 2012

• DOI for Use of Alpha, Beta, and Gamma Diversity Measures to Characterize Seed Dispersal by Animals

When sounds collide: the effect of anthropogenic noise on a breeding assemblage of frogs in Belize, Central America

Kaiser, Kristine; Scofield, Douglas G.; Alloush, Menemsha; Jones, Robin M. et al.

Part of Behaviour, p. 215-232, 2011

• DOI for When sounds collide: the effect of anthropogenic noise on a breeding assemblage of frogs in Belize, Central America

Foraging patterns of acorn woodpeckers (Melanerpes formicivorus) on valley oak (Quercus lobata N,e) in two California oak savanna-woodlands

Scofield, Douglas G.; Alfaro, Victor Ryan; Sork, Victoria L.; Grivet, Delphine et al.

Part of Oecologia, p. 187-196, 2011

• DOI for Foraging patterns of acorn woodpeckers (Melanerpes formicivorus) on valley oak (Quercus lobata N,e) in two California oak savanna-woodlands
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Influence of acorn woodpecker social behaviour on transport of coast live oak (Quercus agrifolia) acorns in a southern California oak savanna

Scofield, Douglas G.; Sork, Victoria L.; Smouse, Peter E.

Part of Journal of Ecology, p. 561-572, 2010

• DOI for Influence of acorn woodpecker social behaviour on transport of coast live oak (Quercus agrifolia) acorns in a southern California oak savanna

Endogenous Mechanisms for the Origins of Spliceosomal Introns

Catania, Francesco; Gao, Xiang; Scofield, Douglas

Part of Journal of Heredity, p. 591-596, 2009

• DOI for Endogenous Mechanisms for the Origins of Spliceosomal Introns

Intron presence-absence polymorphisms in Daphnia

Omilian, Angela; Scofield, Douglas; Lynch, Michael

Part of Molecular biology and evolution, p. 2129-2139, 2008

• DOI for Intron presence-absence polymorphisms in Daphnia

Evolutionary Diversification of the Sm Family of RNA-Associated Proteins

Scofield, Douglas; Lynch, Michael

Part of Molecular biology and evolution, p. 2255-2267, 2008

• DOI for Evolutionary Diversification of the Sm Family of RNA-Associated Proteins

Position of the final intron in full-length transcripts: Determined by NMD?

Scofield, Douglas; Hong, Xin; Lynch, Michael

Part of Molecular biology and evolution, p. 896-899, 2007

• DOI for Position of the final intron in full-length transcripts: Determined by NMD?

Medial pith cells per meter in twigs as a proxy for mitotic growth rate (Phi/m) in the apical meristem

Scofield, Douglas

Part of American Journal of Botany, p. 1740-1747, 2006

• DOI for Medial pith cells per meter in twigs as a proxy for mitotic growth rate (Phi/m) in the apical meristem

Intron size, abundance, and distribution within untranslated regions of genes

Hong, Xin; Scofield, Douglas; Lynch, Michael

Part of Molecular biology and evolution, p. 2392-2404, 2006

• DOI for Intron size, abundance, and distribution within untranslated regions of genes

Mitosis, stature and evolution of plant mating systems: low-Phi and high-Phi plants

Scofield, Douglas; Schultz, Stewart

Part of Proceedings of the Royal Society of London. Biological Sciences, p. 275-282, 2006

• DOI for Mitosis, stature and evolution of plant mating systems: low-Phi and high-Phi plants

The evolution of transcription-initiation sites

Lynch, Michael; Scofield, Douglas; Hong, Xin

Part of Molecular biology and evolution, p. 1137-1146, 2005

• DOI for The evolution of transcription-initiation sites

Variant calling using NGS data in European aspen (Populus tremula)

Wang, Jing; Scofield, Douglas G.; Street, Nathaniel R.; Ingvarsson, Pär K.

Part of Advances in the Understanding of Biological Sciences using Next Generation Sequencing (NGS) Approaches, Springer, 2015

NMD and the evolution of eukaryotic gene structure

Lynch, Michael; Hong, Xin; Scofield, Douglas G.

Part of Nonsense-Mediated mRNA Decay, p. 197-211, Landes Bioscience/Eurekah.com, 2006

Contribution of ecdysone signaling to photoperiodic wing polyphenism in the water strider Gerris buenoi

Gudmunds, Erik; Armisen, David; Mesilaakso, Lauri; Scofield, Douglas et al.

The combination of HiFi and HiC sequencing technologies enables the investigation of structural variants in speciation of Ficedula flycatchers

Chase, Madeline; Scofield, Douglas; Kraft, Fanny-Linn; Segami, Carolina et al.

Genetic structure and diversity of the declining orchid Gymnadenia conopsea in Scandinavia: implications for conservation and management

Söderquist, Linus; Joffard, Nina; Scofield, Douglas; Milesi, Pascal et al.

Assembly of polymorphic Y chromosomes reveals molecular basis of variation in male body size

Kaufmann, Philipp; Wiberg, R. Axel. W.; Paida, Varvara; Papachristos, Konstantinos et al.