Tom van der Valk

Whole-genome resequencing facilitates the development of a 50K single nucleotide polymorphism genotyping array for Scots pine (Pinus sylvestris L.) and its transferability to other pine species

Barcala, Maximiliano Estravis; van der Valk, Tom; Chen, Zhiqiang; Funda, Tomas et al.

Part of The Plant Journal, p. 944-955, 2024

• DOI for Whole-genome resequencing facilitates the development of a 50K single nucleotide polymorphism genotyping array for Scots pine (Pinus sylvestris L.) and its transferability to other pine species
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Inbreeding and genetic load in a pair of sibling grouse species: Tetrastes sewersowi and T. bonasia

Song, Kai; van der Valk, Tom; Gao, Bin; Halvarsson, Peter et al.

Part of Avian Research, 2024

• DOI for Inbreeding and genetic load in a pair of sibling grouse species: Tetrastes sewersowi and T. bonasia
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GenErode: a bioinformatics pipeline to investigate genome erosion in endangered and extinct species

Kutschera, Verena E.; Kierczak, Marcin; van der Valk, Tom; von Seth, Johanna et al.

Part of BMC Bioinformatics, 2022

• DOI for GenErode: a bioinformatics pipeline to investigate genome erosion in endangered and extinct species
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Mammuthus sp. (Early and Middle Pleistocene Mammoths)

Pecnerová, Patrícia; Díez-del-Molino, David; van der Valk, Tom; Dehasque, Marianne et al.

Part of Trends in Genetics, p. 682-683, 2021

• DOI for Mammuthus sp. (Early and Middle Pleistocene Mammoths)
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Ancient and modem genomes unravel the evolutionary history of the rhinoceros family

Liu, Shanlin; Westbury, Michael; Dussex, Nicolas; Mitchell, Kieren J. et al.

Part of Cell, p. 4874-48850000000000000000, 2021

• DOI for Ancient and modem genomes unravel the evolutionary history of the rhinoceros family
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Whole-genome resequencing facilitates the development of a 50K single nucleotide polymorphism genotyping array for Scots pine (Pinus sylvestris L.) and its transferability to other pine species

Barcala, Maximiliano Estravis; van der Valk, Tom; Chen, Zhiqiang; Funda, Tomas et al.

Part of The Plant Journal, p. 944-955, 2024

• DOI for Whole-genome resequencing facilitates the development of a 50K single nucleotide polymorphism genotyping array for Scots pine (Pinus sylvestris L.) and its transferability to other pine species
• Download full text (pdf) of Whole-genome resequencing facilitates the development of a 50K single nucleotide polymorphism genotyping array for Scots pine (Pinus sylvestris L.) and its transferability to other pine species

Inbreeding and genetic load in a pair of sibling grouse species: Tetrastes sewersowi and T. bonasia

Song, Kai; van der Valk, Tom; Gao, Bin; Halvarsson, Peter et al.

Part of Avian Research, 2024

• DOI for Inbreeding and genetic load in a pair of sibling grouse species: Tetrastes sewersowi and T. bonasia
• Download full text (pdf) of Inbreeding and genetic load in a pair of sibling grouse species: Tetrastes sewersowi and T. bonasia

GenErode: a bioinformatics pipeline to investigate genome erosion in endangered and extinct species

Kutschera, Verena E.; Kierczak, Marcin; van der Valk, Tom; von Seth, Johanna et al.

Part of BMC Bioinformatics, 2022

• DOI for GenErode: a bioinformatics pipeline to investigate genome erosion in endangered and extinct species
• Download full text (pdf) of GenErode: a bioinformatics pipeline to investigate genome erosion in endangered and extinct species

Mammuthus sp. (Early and Middle Pleistocene Mammoths)

Pecnerová, Patrícia; Díez-del-Molino, David; van der Valk, Tom; Dehasque, Marianne et al.

Part of Trends in Genetics, p. 682-683, 2021

• DOI for Mammuthus sp. (Early and Middle Pleistocene Mammoths)
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Ancient and modem genomes unravel the evolutionary history of the rhinoceros family

Liu, Shanlin; Westbury, Michael; Dussex, Nicolas; Mitchell, Kieren J. et al.

Part of Cell, p. 4874-48850000000000000000, 2021

• DOI for Ancient and modem genomes unravel the evolutionary history of the rhinoceros family
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Million-year-old DNA sheds light on the genomic history of mammoths

van der Valk, Tom; Pecnerova, Patricia; Diez-del-Molino, David; Bergström, Anders et al.

Part of Nature, p. 265-269, 2021

• DOI for Million-year-old DNA sheds light on the genomic history of mammoths

Genomic insights into the conservation status of the world's last remaining Sumatran rhinoceros populations

von Seth, Johanna; Dussex, Nicolas; Díez-del-Molino, David; van der Valk, Tom et al.

Part of Nature Communications, 2021

• DOI for Genomic insights into the conservation status of the world's last remaining Sumatran rhinoceros populations
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The genome of the endangered dryas monkey provides new insights into the evolutionary history of the vervets

van der Valk, Tom; Gonda, Catalina M.; Silegowa, Henri; Almanza, Sandra et al.

Part of Molecular biology and evolution, p. 183-194, 2020

• DOI for The genome of the endangered dryas monkey provides new insights into the evolutionary history of the vervets
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Antimicrobial peptide and sequence variation along a latitudinal gradient in two anurans

Cortazar-Chinarro, Maria; Meyer-Lucht, Yvonne; van der Valk, Tom; Richter Boix, Alex et al.

Part of BMC Genetics, 2020

• DOI for Antimicrobial peptide and sequence variation along a latitudinal gradient in two anurans
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Dental Calculus as a Tool to Study the Evolution of the Mammalian Oral Microbiome

Brealey, Jaelle C.; Leitao, Henrique G.; van der Valk, Tom; Xu, Wenbo et al.

Part of Molecular biology and evolution, p. 3003-3022, 2020

• DOI for Dental Calculus as a Tool to Study the Evolution of the Mammalian Oral Microbiome
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Index hopping on the Illumina HiseqX platform and its consequences for ancient DNA studies

van der Valk, Tom; Vezzi, Francesco; Ormestad, Mattias; Dalen, Love et al.

Part of Molecular Ecology Resources, p. 1171-1181, 2020

• DOI for Index hopping on the Illumina HiseqX platform and its consequences for ancient DNA studies

Host-derived population genomics data provides insights into bacterial and diatom composition of the killer whale skin

Hooper, Rebecca; Brealey, Jaelle C.; van der Valk, Tom; Alberdi, Antton et al.

Part of Molecular Ecology, p. 484-502, 2019

• DOI for Host-derived population genomics data provides insights into bacterial and diatom composition of the killer whale skin
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Historical Genomes Reveal the Genomic Consequences of Recent Population Decline in Eastern Gorillas

van der Valk, Tom; Díez-Del-Molino, David; Marques-Bonet, Tomas; Guschanski, Katerina et al.

Part of Current Biology, p. 165-170000000, 2019

• DOI for Historical Genomes Reveal the Genomic Consequences of Recent Population Decline in Eastern Gorillas

Significant loss of mitochondrial diversity within the last century due to extinction of peripheral populations in eastern gorillas

van der Valk, Tom; Sandoval-Castellanos, Edson; Caillaud, Damien; Ngobobo, Urbain et al.

Part of Scientific Reports, 2018

• DOI for Significant loss of mitochondrial diversity within the last century due to extinction of peripheral populations in eastern gorillas
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Population-level assessment of genetic diversity and habitat fragmentation in critically endangered Grauer's gorillas

Baas, Pauline; van der Valk, Tom; Vigilant, Linda; Ngobobo, Urbain et al.

Part of American Journal of Physical Anthropology, p. 565-575, 2018

• DOI for Population-level assessment of genetic diversity and habitat fragmentation in critically endangered Grauer's gorillas

Target-Specificity in Scorpions: Comparing Lethality of Scorpion Venoms across Arthropods and Vertebrates

van der Meijden, Arie; Koch, Bjørn; van der Valk, Tom; Vargas-Muñoz, Leidy J. et al.

Part of Toxins, 2017

• DOI for Target-Specificity in Scorpions: Comparing Lethality of Scorpion Venoms across Arthropods and Vertebrates
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Whole mitochondrial genome capture from faecal samples and museum-preserved specimens

van der Valk, Tom; Durazo, Frida Lona; Dalen, Love; Guschanski, Katerina

Part of Molecular Ecology Resources, 2017

• DOI for Whole mitochondrial genome capture from faecal samples and museum-preserved specimens

Genomics of population decline

van der Valk, Tom

2019

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Purifying selection in Grouse is more efficient in large populations

Song, Kai; van der Valk, Tom; Gao, Bin; Halvarsson, Peter et al.

Genetic purging in mammalian populations

van der Valk, Tom; de Manuel, Marc; Marques-Bonet, Tomas; Guschanski, Katerina

Divergence of mitochondrial aerobic metabolism and its molecular basis in two closely related birds adapted to different climates

Zhu, Yishu; van der Heijden, Eva; Chase, Madeline; Boël, Mélanie et al.

From conservation genetics to conservation genomics using minimal-invasive sampling methods

van der Valk, Tom

2018

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