Peter Kasson

Unmasking complex kinetics in viral entry by inferring hypoexponential models

Adenekan, Oyinkansola; Kasson, Peter M.

Part of Biophysical Journal, p. 4356-4367, 2025

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Influenza viral infection at the plasma membrane is restricted by lipid composition

Mannsverk, Steinar; Villamil Giraldo, Ana M.; Kasson, Peter M.

Part of Journal of Virology, p. 1-18, 2025

• DOI for Influenza viral infection at the plasma membrane is restricted by lipid composition
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Structural prediction of chimeric immunogen candidates to elicit targeted antibodies against betacoronaviruses

Simpson, Jamel; Kasson, Peter M.

Part of PloS Computational Biology, 2025

• DOI for Structural prediction of chimeric immunogen candidates to elicit targeted antibodies against betacoronaviruses
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Single-Virus Microscopy of Biochemical Events in Viral Entry

Cervantes, Marcos; Mannsverk, Steinar; Hess, Tobin; Filipe, Diogo et al.

Part of JACS Au, p. 399-407, 2024

• DOI for Single-Virus Microscopy of Biochemical Events in Viral Entry
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Key interaction networks: Identifying evolutionarily conserved non-covalent interaction networks across protein families

Yehorova, Dariia; Crean, Rory M.; Kasson, Peter M.; Kamerlin, Shina C. L.

Part of Protein Science, 2024

• DOI for Key interaction networks: Identifying evolutionarily conserved non-covalent interaction networks across protein families
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Unmasking complex kinetics in viral entry by inferring hypoexponential models

Adenekan, Oyinkansola; Kasson, Peter M.

Part of Biophysical Journal, p. 4356-4367, 2025

• DOI for Unmasking complex kinetics in viral entry by inferring hypoexponential models
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Influenza viral infection at the plasma membrane is restricted by lipid composition

Mannsverk, Steinar; Villamil Giraldo, Ana M.; Kasson, Peter M.

Part of Journal of Virology, p. 1-18, 2025

• DOI for Influenza viral infection at the plasma membrane is restricted by lipid composition
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Structural prediction of chimeric immunogen candidates to elicit targeted antibodies against betacoronaviruses

Simpson, Jamel; Kasson, Peter M.

Part of PloS Computational Biology, 2025

• DOI for Structural prediction of chimeric immunogen candidates to elicit targeted antibodies against betacoronaviruses
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Single-Virus Microscopy of Biochemical Events in Viral Entry

Cervantes, Marcos; Mannsverk, Steinar; Hess, Tobin; Filipe, Diogo et al.

Part of JACS Au, p. 399-407, 2024

• DOI for Single-Virus Microscopy of Biochemical Events in Viral Entry
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Key interaction networks: Identifying evolutionarily conserved non-covalent interaction networks across protein families

Yehorova, Dariia; Crean, Rory M.; Kasson, Peter M.; Kamerlin, Shina C. L.

Part of Protein Science, 2024

• DOI for Key interaction networks: Identifying evolutionarily conserved non-covalent interaction networks across protein families
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Using residue interaction networks to understand protein function and evolution and to engineer new proteins

Yehorova, Dariia; Di Geronimo, Bruno; Robinson, Michael; Kasson, Peter M. et al.

Part of Current opinion in structural biology, 2024

• DOI for Using residue interaction networks to understand protein function and evolution and to engineer new proteins
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Friends and relatives: insight into conformational regulation from orthologues and evolutionary lineages using KIF and KIN

Yehorova, Dariia; Crean, Rory M.; Kasson, Peter M.; Kamerlin, Shina Caroline Lynn

Part of Faraday discussions, p. 341-353, 2024

• DOI for Friends and relatives: insight into conformational regulation from orthologues and evolutionary lineages using KIF and KIN
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KIF-Key Interactions Finder: A program to identify the key molecular interactions that regulate protein conformational changes

Crean, Rory M.; Slusky, Joanna S. G.; Kasson, Peter M.; Kamerlin, Shina C. Lynn

Part of Journal of Chemical Physics, 2023

• DOI for KIF-Key Interactions Finder: A program to identify the key molecular interactions that regulate protein conformational changes
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The ACE2 receptor accelerates but is not biochemically required for SARS-CoV-2 membrane fusion

Cervantes, Marcos; Hess, Tobin; Morbioli, Giorgio G. G.; Sengar, Anjali et al.

Part of Chemical Science, p. 6997-7004, 2023

• DOI for The ACE2 receptor accelerates but is not biochemically required for SARS-CoV-2 membrane fusion
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Single-Virus Fusion Measurements Reveal Multiple Mechanistically Equivalent Pathways for SARS-CoV-2 Entry

Sengar, Anjali; Cervantes, Marcos; Bondalapati, Sai T.; Hess, Tobin et al.

Part of Journal of Virology, 2023

• DOI for Single-Virus Fusion Measurements Reveal Multiple Mechanistically Equivalent Pathways for SARS-CoV-2 Entry

Mechanistic dissection of antibody inhibition of influenza entry yields unexpected heterogeneity

Sengar, Anjali; Cervantes, Marcos; Kasson, Peter M.

Part of Biophysical Journal, p. 1996-2006, 2023

• DOI for Mechanistic dissection of antibody inhibition of influenza entry yields unexpected heterogeneity
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Influenza Virus Membrane Fusion Is Promoted by the Endosome-Resident Phospholipid Bis(monoacylglycero)phosphate

Mannsverk, Steinar; Giraldo, Ana M. Villamil; Kasson, Peter M.

Part of Journal of Physical Chemistry B, p. 10445-10451, 2022

• DOI for Influenza Virus Membrane Fusion Is Promoted by the Endosome-Resident Phospholipid Bis(monoacylglycero)phosphate
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Measuring single-virus fusion kinetics using an assay for nucleic acid exposure

Giraldo, Ana M. Villamil; Mannsverk, Steinar; Kasson, Peter M.

Part of Biophysical Journal, p. 4467-4475, 2022

• DOI for Measuring single-virus fusion kinetics using an assay for nucleic acid exposure
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gmxapi: A GROMACS-native Python interface for molecular dynamics with ensemble and plugin support

Irrgang, M. Eric; Davis, Caroline; Kasson, Peter M.

Part of PloS Computational Biology, 2022

• DOI for gmxapi: A GROMACS-native Python interface for molecular dynamics with ensemble and plugin support
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Inference of Joint Conformational Distributions from Separately Acquired Experimental Measurements

Hays, Jennifer M.; Boland, Emily; Kasson, Peter M.

Part of The Journal of Physical Chemistry Letters, p. 1606-1611, 2021

• DOI for Inference of Joint Conformational Distributions from Separately Acquired Experimental Measurements

The N-terminal Helix-Turn-Helix Motif of Transcription Factors MarA and Rob Drives DNA Recognition

Corbella Morató, Marina; Liao, Qinghua; Moreira, Catia; Parracino, Antonietta et al.

Part of Journal of Physical Chemistry B, p. 6791-6806, 2021

• DOI for The N-terminal Helix-Turn-Helix Motif of Transcription Factors MarA and Rob Drives DNA Recognition
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Precise Triggering and Chemical Control of Single-Virus Fusion within Endosomes

Haldar, Sourav; Okamoto, Kenta; Dunning, Rebecca A.; Kasson, Peter M.

Part of Journal of Virology, 2021

• DOI for Precise Triggering and Chemical Control of Single-Virus Fusion within Endosomes

Influenza hemagglutinin drives viral entry via two sequential intramembrane mechanisms

Pabis, Anna; Rawle, Robert J.; Kasson, Peter. M.

Part of Proceedings of the National Academy of Sciences of the United States of America, p. 7200-7207, 2020

• DOI for Influenza hemagglutinin drives viral entry via two sequential intramembrane mechanisms

Bilayer-Coated Nanoparticles Reveal How Influenza Viral Entry Depends on Membrane Deformability but Not Curvature

Giraldo, Ana M. Villamil; Kasson, P. M.

Part of The Journal of Physical Chemistry Letters, p. 7190-7196, 2020

• DOI for Bilayer-Coated Nanoparticles Reveal How Influenza Viral Entry Depends on Membrane Deformability but Not Curvature

Acquired Functional Capsid Structures in Metazoan Totivirus-like dsRNA Virus

Okamoto, Kenta; Ferreira, Ricardo J.; Larsson, Daniel S D; Maia, Filipe R.N.C. et al.

Part of Structure, p. 888-+, 2020

• DOI for Acquired Functional Capsid Structures in Metazoan Totivirus-like dsRNA Virus

Managing Coronavirus Disease 2019 Spread With Voluntary Public Health Measures: Sweden as a Case Study for Pandemic Control

Kamerlin, Shina C. L.; Kasson, Peter M.

Part of Clinical Infectious Diseases, p. 3174-3181, 2020

• DOI for Managing Coronavirus Disease 2019 Spread With Voluntary Public Health Measures: Sweden as a Case Study for Pandemic Control
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Antibiotic Uptake Across Gram-Negative Outer Membranes: Better Predictions Towards Better Antibiotics

Ferreira, Ricardo J.; Kasson, P. M.

Part of ACS - Infectious Diseases, p. 2096-2104, 2019

• DOI for Antibiotic Uptake Across Gram-Negative Outer Membranes: Better Predictions Towards Better Antibiotics

Detecting and Controlling Dye Effects in Single-Virus Fusion Experiments

Rawle, Robert J.; Giraldo, Ana M. Villamil; Boxer, Steven G.; Kasson, Peter M.

Part of Biophysical Journal, p. 445-452, 2019

• DOI for Detecting and Controlling Dye Effects in Single-Virus Fusion Experiments

Long Time-Scale Atomistic Simulations of the Structure and Dynamics of Transcription Factor-DNA Recognition

Liao, Qinghua; Lüking, Malin; Krueger, Dennis M.; Deindl, Sebastian et al.

Part of Journal of Physical Chemistry B, p. 3576-3590, 2019

• DOI for Long Time-Scale Atomistic Simulations of the Structure and Dynamics of Transcription Factor-DNA Recognition
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Hybrid Refinement of Heterogeneous Conformational Ensembles Using Spectroscopic Data

Hays, Jennifer M.; Cafiso, David S.; Kasson, P. M.

Part of The Journal of Physical Chemistry Letters, p. 3410-3414, 2019

• DOI for Hybrid Refinement of Heterogeneous Conformational Ensembles Using Spectroscopic Data

Simulations and Experiments Show a Mechanistic Role for Influenza Fusion Peptides in Membrane Bending and Fusion Stoichiometry

Kasson, Peter

Part of Biophysical Journal, 2018

Adaptive ensemble simulations of biomolecules

Kasson, Peter; Jha, Shantenu

Part of Current opinion in structural biology, p. 87-94, 2018

• DOI for Adaptive ensemble simulations of biomolecules
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Refinement of highly flexible protein structures using simulation-guided spectroscopy

Hays, Jennifer M.; Kieber, Marissa K.; Li, Jason Z.; Han, Ji In et al.

Part of Angewandte Chemie International Edition, p. 17110-17114, 2018

• DOI for Refinement of highly flexible protein structures using simulation-guided spectroscopy
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gmxapi: a high-level interface for advanced control and extension of molecular dynamics simulations.

Irrgang, M Eric; Hays, Jennifer M; Kasson, Peter M.

Part of Bioinformatics, p. 3945-3947, 2018

• DOI for gmxapi: a high-level interface for advanced control and extension of molecular dynamics simulations.
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Conformational Intermediate That Controls KPC-2 Catalysis and Beta-Lactam Drug Resistance

Cortina, George A.; Hays, Jennifer M.; Kasson, P. M.

Part of ACS Catalysis, p. 2741-2747, 2018

• DOI for Conformational Intermediate That Controls KPC-2 Catalysis and Beta-Lactam Drug Resistance

Cholesterol enhances influenza binding avidity by controlling nanoscale receptor clustering

Goronzy, I. N.; Rawle, R. J.; Boxer, S. G.; Kasson, Peter M.

Part of Chemical Science, p. 2340-2347, 2018

• DOI for Cholesterol enhances influenza binding avidity by controlling nanoscale receptor clustering
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pH Dependence of Zika Membrane Fusion Kinetics Reveals an Off-Pathway State

Rawle, Robert J.; Webster, Elizabeth R.; Jelen, Marta; Kasson, Peter M. et al.

Part of ACS CENTRAL SCIENCE, p. 1503-1510, 2018

• DOI for pH Dependence of Zika Membrane Fusion Kinetics Reveals an Off-Pathway State
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Influenza Hemifusion Phenotype Depends on Membrane Context: Differences in Cell-Cell and Virus-Cell Fusion

Zawada, Katarzyna E.; Okamoto, Kenta; Kasson, Peter M.

Part of Journal of Molecular Biology, p. 594-601, 2018

• DOI for Influenza Hemifusion Phenotype Depends on Membrane Context: Differences in Cell-Cell and Virus-Cell Fusion

Understanding allosteric modulation of beta lactamase function and bacterial drug resistance

Kasson, Peter; Cortina, George; Latallo, Malgorzata

Part of Abstracts of Papers of the American Chemical Society, 2017

Predicting allosteric mutants that increase activity of a major antibiotic resistance enzyme

Latallo, M. J.; Cortina, G. A.; Faham, S.; Nakamoto, R. K. et al.

Part of Chemical Science, p. 6484-6492, 2017

• DOI for Predicting allosteric mutants that increase activity of a major antibiotic resistance enzyme
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Computational methods to study enveloped viral entry

Tuerkova, Alzbeta; Kasson, Peter M.

Part of Biochemical Society Transactions, p. 2527-2537, 2021

• DOI for Computational methods to study enveloped viral entry

Infectious Disease Research in the Era of Big Data

Kasson, Peter M.

Part of ANNUAL REVIEW OF BIOMEDICAL DATA SCIENCE, VOL 3, 2020, p. 43-59, ANNUAL REVIEWS, 2020

• DOI for Infectious Disease Research in the Era of Big Data