Shakhawath Hossain
Researcher at Department of Pharmacy; Molecular Pharmaceutics
- E-mail:
- shakhawath.hossain@uu.se
- Visiting address:
- Biomedicinskt Centrum BMC, Husargatan 3
- Postal address:
- Box 580
751 23 UPPSALA
Keywords
- molecular dynamics
- in silico modelling

Publications
Recent publications
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Part of Physical Chemistry, Chemical Physics - PCCP, p. 13514-13525, 2026
- DOI for Aggregation behavior of sodium caprate under different pH, concentration, and intestinal fluid conditions: a coarse-grained molecular dynamics study comparing Martini 2 and Martini 3
- Download full text (pdf) of Aggregation behavior of sodium caprate under different pH, concentration, and intestinal fluid conditions: a coarse-grained molecular dynamics study comparing Martini 2 and Martini 3
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Part of Journal of Colloid and Interface Science, 2026
- DOI for Double emulsions enable in situ generation of permeation enhancers for oral delivery of macromolecules
- Download full text (pdf) of Double emulsions enable in situ generation of permeation enhancers for oral delivery of macromolecules
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Part of Polymer Chemistry, p. 655-669, 2026
- DOI for Designing jasmine lactone copolymer micelles for drug delivery: influence of ionic group density and chain length
- Download full text (pdf) of Designing jasmine lactone copolymer micelles for drug delivery: influence of ionic group density and chain length
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Part of Drug Delivery, 2026
- DOI for Mechanics of small intestine motility for oral macromolecular delivery: modelling segmentation versus peristalsis
- Download full text (pdf) of Mechanics of small intestine motility for oral macromolecular delivery: modelling segmentation versus peristalsis
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Part of Colloids and Surfaces B, 2026
- DOI for Molecular dynamics simulations of a hexagonal liquid crystal phase to study drug partitioning and release mechanisms
- Download full text (pdf) of Molecular dynamics simulations of a hexagonal liquid crystal phase to study drug partitioning and release mechanisms
All publications
Articles in journal
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Part of Physical Chemistry, Chemical Physics - PCCP, p. 13514-13525, 2026
- DOI for Aggregation behavior of sodium caprate under different pH, concentration, and intestinal fluid conditions: a coarse-grained molecular dynamics study comparing Martini 2 and Martini 3
- Download full text (pdf) of Aggregation behavior of sodium caprate under different pH, concentration, and intestinal fluid conditions: a coarse-grained molecular dynamics study comparing Martini 2 and Martini 3
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Part of Journal of Colloid and Interface Science, 2026
- DOI for Double emulsions enable in situ generation of permeation enhancers for oral delivery of macromolecules
- Download full text (pdf) of Double emulsions enable in situ generation of permeation enhancers for oral delivery of macromolecules
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Part of Polymer Chemistry, p. 655-669, 2026
- DOI for Designing jasmine lactone copolymer micelles for drug delivery: influence of ionic group density and chain length
- Download full text (pdf) of Designing jasmine lactone copolymer micelles for drug delivery: influence of ionic group density and chain length
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Part of Drug Delivery, 2026
- DOI for Mechanics of small intestine motility for oral macromolecular delivery: modelling segmentation versus peristalsis
- Download full text (pdf) of Mechanics of small intestine motility for oral macromolecular delivery: modelling segmentation versus peristalsis
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Part of Colloids and Surfaces B, 2026
- DOI for Molecular dynamics simulations of a hexagonal liquid crystal phase to study drug partitioning and release mechanisms
- Download full text (pdf) of Molecular dynamics simulations of a hexagonal liquid crystal phase to study drug partitioning and release mechanisms
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Part of Journal of Nanobiotechnology, 2025
- DOI for Machine learning framework for investigating nano- and micro-scale particle diffusion in colonic mucus
- Download full text (pdf) of Machine learning framework for investigating nano- and micro-scale particle diffusion in colonic mucus
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Part of Chemistry and Physics of Lipids, 2024
- DOI for Molecular dynamics simulations of lipid composition and its impact on structural and dynamic properties of skin membrane
- Download full text (pdf) of Molecular dynamics simulations of lipid composition and its impact on structural and dynamic properties of skin membrane
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Part of International Journal of Biological Macromolecules, 2023
- DOI for Numerical simulation of peristalsis to study co-localization and intestinal distribution of a macromolecular drug and permeation enhancer
- Download full text (pdf) of Numerical simulation of peristalsis to study co-localization and intestinal distribution of a macromolecular drug and permeation enhancer
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Part of Nanoscale, p. 19180-19195, 2023
- DOI for Revealing the interaction between peptide drugs and permeation enhancers in the presence of intestinal bile salts
- Download full text (pdf) of Revealing the interaction between peptide drugs and permeation enhancers in the presence of intestinal bile salts
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Part of Molecular Pharmaceutics, p. 4800-4801, 2023
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Part of Molecular Pharmaceutics, p. 124-137, 2022
- DOI for In Silico-Based Experiments on Mechanistic Interactions between Several Intestinal Permeation Enhancers with a Lipid Bilayer Model
- Download full text (pdf) of In Silico-Based Experiments on Mechanistic Interactions between Several Intestinal Permeation Enhancers with a Lipid Bilayer Model
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Part of Processes, p. 29, 2022
- DOI for Explicit-pH Coarse-Grained Molecular Dynamics Simulations Enable Insights into Restructuring of Intestinal Colloidal Aggregates with Permeation Enhancers
- Download full text (pdf) of Explicit-pH Coarse-Grained Molecular Dynamics Simulations Enable Insights into Restructuring of Intestinal Colloidal Aggregates with Permeation Enhancers
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Membrane insertion mechanism of the caveola coat protein Cavin1
Part of Proceedings of the National Academy of Sciences of the United States of America, 2022
- DOI for Membrane insertion mechanism of the caveola coat protein Cavin1
- Download full text (pdf) of Membrane insertion mechanism of the caveola coat protein Cavin1
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Part of Molecular Pharmaceutics, p. 904-917, 2022
- DOI for Aggregation Behavior of Structurally Similar Therapeutic Peptides Investigated by H-1 NMR and All-Atom Molecular Dynamics Simulations
- Download full text (pdf) of Aggregation Behavior of Structurally Similar Therapeutic Peptides Investigated by H-1 NMR and All-Atom Molecular Dynamics Simulations
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Part of Journal of Pharmaceutical Sciences, p. 176-185, 2021
- DOI for Molecular dynamics simulations reveal membrane interactions for poorly water-soluble drugs: impact of bile solubilization and drug aggregation
- Download full text (pdf) of Molecular dynamics simulations reveal membrane interactions for poorly water-soluble drugs: impact of bile solubilization and drug aggregation
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Part of Angewandte Chemie International Edition, p. 2069-2073, 2021
- DOI for TIRF Microscopy‐Based Monitoring of Drug Permeation Across a Lipid Membrane Supported on Mesoporous Silica
- Download full text (pdf) of TIRF Microscopy‐Based Monitoring of Drug Permeation Across a Lipid Membrane Supported on Mesoporous Silica
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Influence of Bile Composition on Membrane Incorporation of Transient Permeability Enhancers
Part of Molecular Pharmaceutics, p. 4226-4240, 2020
- DOI for Influence of Bile Composition on Membrane Incorporation of Transient Permeability Enhancers
- Download full text (pdf) of Influence of Bile Composition on Membrane Incorporation of Transient Permeability Enhancers
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Uniaxial compression of three-dimensional entangled fibre networks: impacts of contact interactions
Part of Modelling and Simulation in Materials Science and Engineering, 2019
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Part of AAPS PharmSciTech, 2019
- DOI for Aggregation Behavior of Medium Chain Fatty Acids Studied by Coarse-Grained Molecular Dynamics Simulation
- Download full text (pdf) of Aggregation Behavior of Medium Chain Fatty Acids Studied by Coarse-Grained Molecular Dynamics Simulation
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Scaling behaviour of strength of 3D-, semi-flexible-, cross-linked fibre network
Part of International Journal of Solids and Structures, p. 68-74, 2019
Articles, review/survey
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Molecular Dynamics Simulations in Drug Discovery and Pharmaceutical Development
Part of Processes, 2021
- DOI for Molecular Dynamics Simulations in Drug Discovery and Pharmaceutical Development
- Download full text (pdf) of Molecular Dynamics Simulations in Drug Discovery and Pharmaceutical Development
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Part of European journal of pharmaceutics and biopharmaceutics, p. 46-55, 2019
- DOI for Molecular simulation as a computational pharmaceutics tool to predict drug solubility, solubilization processes and partitioning
- Download full text (pdf) of Molecular simulation as a computational pharmaceutics tool to predict drug solubility, solubilization processes and partitioning
Chapters in book
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Molecular Dynamics Simulations as a Tool to Understand Drug Solubilization in Pharmaceutical Systems
Part of Comprehensive Computational Chemistry, Elsevier, 2023