Marcin Kierczak

Bayesian mixed model analysis uncovered 21 risk loci for chronic kidney disease in boxer dogs

Lingaas, Frode; Tengvall, Katarina; Jansen, Johan Hogset; Pelander, Lena et al.

Part of PLOS Genetics, 2023

• DOI for Bayesian mixed model analysis uncovered 21 risk loci for chronic kidney disease in boxer dogs
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Linked-read whole-genome sequencing resolves common and private structural variants in multiple myeloma

Pena-Perez, Lucia; Frengen, Nicolai; Hauenstein, Julia; Gran, Charlotte et al.

Part of Blood Advances, p. 5009-5023, 2022

• DOI for Linked-read whole-genome sequencing resolves common and private structural variants in multiple myeloma

Contribution of rare whole-genome sequencing variants to plasma protein levels and the missing heritability

Kierczak, Marcin; Rafati, Nima; Höglund, Julia; Gourlé, Hadrien et al.

Part of Nature Communications, 2022

• DOI for Contribution of rare whole-genome sequencing variants to plasma protein levels and the missing heritability
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GenErode: a bioinformatics pipeline to investigate genome erosion in endangered and extinct species

Kutschera, Verena E.; Kierczak, Marcin; van der Valk, Tom; von Seth, Johanna et al.

Part of BMC Bioinformatics, 2022

• DOI for GenErode: a bioinformatics pipeline to investigate genome erosion in endangered and extinct species
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A genomic and morphometric analysis of alpine bumblebees: Ongoing reductions in tongue length but no clear genetic component

Christmas, Matthew; Jones, Julia; Olsson, Anna; Wallerman, Ola et al.

Part of Molecular Ecology, p. 1111-1127, 2022

• DOI for A genomic and morphometric analysis of alpine bumblebees: Ongoing reductions in tongue length but no clear genetic component
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Bayesian mixed model analysis uncovered 21 risk loci for chronic kidney disease in boxer dogs

Lingaas, Frode; Tengvall, Katarina; Jansen, Johan Hogset; Pelander, Lena et al.

Part of PLOS Genetics, 2023

• DOI for Bayesian mixed model analysis uncovered 21 risk loci for chronic kidney disease in boxer dogs
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Linked-read whole-genome sequencing resolves common and private structural variants in multiple myeloma

Pena-Perez, Lucia; Frengen, Nicolai; Hauenstein, Julia; Gran, Charlotte et al.

Part of Blood Advances, p. 5009-5023, 2022

• DOI for Linked-read whole-genome sequencing resolves common and private structural variants in multiple myeloma

Contribution of rare whole-genome sequencing variants to plasma protein levels and the missing heritability

Kierczak, Marcin; Rafati, Nima; Höglund, Julia; Gourlé, Hadrien et al.

Part of Nature Communications, 2022

• DOI for Contribution of rare whole-genome sequencing variants to plasma protein levels and the missing heritability
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GenErode: a bioinformatics pipeline to investigate genome erosion in endangered and extinct species

Kutschera, Verena E.; Kierczak, Marcin; van der Valk, Tom; von Seth, Johanna et al.

Part of BMC Bioinformatics, 2022

• DOI for GenErode: a bioinformatics pipeline to investigate genome erosion in endangered and extinct species
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A genomic and morphometric analysis of alpine bumblebees: Ongoing reductions in tongue length but no clear genetic component

Christmas, Matthew; Jones, Julia; Olsson, Anna; Wallerman, Ola et al.

Part of Molecular Ecology, p. 1111-1127, 2022

• DOI for A genomic and morphometric analysis of alpine bumblebees: Ongoing reductions in tongue length but no clear genetic component
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FOXO Dictates Initiation of B Cell Development and Myeloid Restriction in Common Lymphoid Progenitors

Pena-Perez, Lucia; Kharazi, Shabnam; Frengen, Nicolai; Krstic, Aleksandra et al.

Part of Frontiers in Immunology, 2022

• DOI for FOXO Dictates Initiation of B Cell Development and Myeloid Restriction in Common Lymphoid Progenitors
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FOXO1 and FOXO3 Cooperatively Regulate Innate Lymphoid Cell Development

Luu, Thuy T.; Sondergaard, Jonas Norskov; Pena-Perez, Lucia; Kharazi, Shabnam et al.

Part of Frontiers in Immunology, 2022

• DOI for FOXO1 and FOXO3 Cooperatively Regulate Innate Lymphoid Cell Development
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The ABCC4 gene is associated with pyometra in golden retriever dogs

Arendt, Maja Louise; Ambrosen, Aime; Fall, Tove; Kierczak, Marcin et al.

Part of Scientific Reports, 2021

• DOI for The ABCC4 gene is associated with pyometra in golden retriever dogs
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Genetic Barriers to Historical Gene Flow between Cryptic Species of Alpine Bumblebees Revealed by Comparative Population Genomics

Christmas, Matthew; Jones, Julia C.; Olsson, Anna; Wallerman, Ola et al.

Part of Molecular biology and evolution, p. 3126-3143, 2021

• DOI for Genetic Barriers to Historical Gene Flow between Cryptic Species of Alpine Bumblebees Revealed by Comparative Population Genomics
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Genomic insights into the conservation status of the world's last remaining Sumatran rhinoceros populations

von Seth, Johanna; Dussex, Nicolas; Díez-del-Molino, David; van der Valk, Tom et al.

Part of Nature Communications, 2021

• DOI for Genomic insights into the conservation status of the world's last remaining Sumatran rhinoceros populations
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Transcriptomes from German shepherd dogs reveal differences in immune activity between atopic dermatitis affected and control skin

Tengvall, Katarina; Bergvall, K; Olsson, M; Ardesjö-Lundgren, Brita et al.

Part of Immunogenetics, p. 315-323, 2020

• DOI for Transcriptomes from German shepherd dogs reveal differences in immune activity between atopic dermatitis affected and control skin
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Building de novo reference genome assemblies of complex eukaryotic microorganisms from single nuclei

Montoliu-Nerin, Merce; Sanchez-Garcia, Marisol; Bergin, Claudia; Grabherr, Manfred et al.

Part of Scientific Reports, 2020

• DOI for Building de novo reference genome assemblies of complex eukaryotic microorganisms from single nuclei
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Pre-extinction Demographic Stability and Genomic Signatures of Adaptation in the Woolly Rhinoceros

Lord, Edana; Dussex, Nicolas; Kierczak, Marcin; Diez-del-Molino, David et al.

Part of Current Biology, p. 3871-3879, 2020

• DOI for Pre-extinction Demographic Stability and Genomic Signatures of Adaptation in the Woolly Rhinoceros
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SETD2 Is Recurrently Mutated in Whole-Exome Sequenced Canine Osteosarcoma

Sakthikumar, Sharadha; Elvers, Ingegerd; Kim, Jaegil; Arendt, Maja Louise et al.

Part of Cancer Research, p. 3421-3431, 2018

• DOI for SETD2 Is Recurrently Mutated in Whole-Exome Sequenced Canine Osteosarcoma

Absolute quantification reveals the stable transmission of a high copy number variant linked to autoinflammatory disease

Olsson, M.; Kierczak, Marcin; Karlsson, Åsa; Jablonska, Jagoda et al.

Part of BMC Genomics, 2016

• DOI for Absolute quantification reveals the stable transmission of a high copy number variant linked to autoinflammatory disease
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Multiple regulatory variants located in cell type-specific enhancers within the PKP2 locus form major risk and protective haplotypes for canine atopic dermatitis in German shepherd dogs

Tengvall, Katarina; Kozyrev, Sergey; Kierczak, Marcin; Bergvall, Kerstin et al.

Part of BMC Genetics, 2016

• DOI for Multiple regulatory variants located in cell type-specific enhancers within the PKP2 locus form major risk and protective haplotypes for canine atopic dermatitis in German shepherd dogs
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Effect of Breed on Plasma Endothelin-1 Concentration, Plasma Renin Activity, and Serum Cortisol Concentration in Healthy Dogs

Höglund, K.; Lequarre, A. -S; Ljungvall, I.; Mc Entee, K. et al.

Part of Journal of Veterinary Internal Medicine, p. 566-573, 2016

• DOI for Effect of Breed on Plasma Endothelin-1 Concentration, Plasma Renin Activity, and Serum Cortisol Concentration in Healthy Dogs
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Genome-Wide Analyses Suggest Mechanisms Involving Early B-cell Development in Canine IgA Deficiency

Olsson, Mia; Tengvall, Katarina; Frankowiack, Marcel; Kierczak, Marcin et al.

Part of PLOS ONE, 2015

• DOI for Genome-Wide Analyses Suggest Mechanisms Involving Early B-cell Development in Canine IgA Deficiency
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A Multi-Breed Genome-Wide Association Analysis for Canine Hypothyroidism Identifies a Shared Major Risk Locus on CFA12

Bianchi, Matteo; Dahlgren, Stina; Massey, Jonathan; Dietschi, Elisabeth et al.

Part of PLOS ONE, 2015

• DOI for A Multi-Breed Genome-Wide Association Analysis for Canine Hypothyroidism Identifies a Shared Major Risk Locus on CFA12
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cgmisc: Enhanced Genome-wide Association Analyses and Visualisation

Kierczak, Marcin; Jablonska, Jagoda; Forsberg, S. K.; Bianchi, Matteo et al.

Part of Bioinformatics, p. 3830-3831, 2015

• DOI for cgmisc: Enhanced Genome-wide Association Analyses and Visualisation
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The Shepherds' Tale: A Genome-Wide Study across 9 Dog Breeds Implicates Two Loci in the Regulation of Fructosamine Serum Concentration in Belgian Shepherds

Forsberg, Simon K. G.; Kierczak, Marcin; Ljungvall, Ingrid; Merveille, Anne-Christine et al.

Part of PLOS ONE, 2015

• DOI for The Shepherds' Tale: A Genome-Wide Study across 9 Dog Breeds Implicates Two Loci in the Regulation of Fructosamine Serum Concentration in Belgian Shepherds
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A Rough Set-Based Model of HIV-1 Reverse Transcriptase Resistome

Kierczak, Marcin; Ginalski, Krzysztof; Dramiński, Michal; Koronacki, Jacek et al.

Part of Bioinformatics and Biology Insights, p. 109-127, 2009

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Monte Carlo feature selection and interdependency discovery in supervised classification

Dramiński, Michał; Kierczak, Marcin; Koronacki, Jacek; Komorowski, Jan

Part of Advances in Machine Learning, Springer, 2010

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From Physicochemical Features to Interdependency Networks: A Monte Carlo Approach to Modeling HIV-1 Resistome and Post-translational Modifications

Kierczak, Marcin

2009

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Construction of Rough Set-Based Classifiers for Predicting HIV Resistance to Nucleoside Reverse Transcriptase Inhibitors

Kierczak, Marcin; Rudnicki, Witold; Komorowski, Jan

Part of GRANULAR COMPUTING, p. 249-258, 2008

• DOI for Construction of Rough Set-Based Classifiers for Predicting HIV Resistance to Nucleoside Reverse Transcriptase Inhibitors

A Statistical Method for Determining Importance of Variables in an Information System

Rudnicki, Witold R.; Kierczak, Marcin M.; Koronacki, Jacek; Komorowski, Jan

Part of Rough Sets and Current Trends in Computing, p. 557-566, 2006

• DOI for A Statistical Method for Determining Importance of Variables in an Information System

Analysis of local molecular interaction networks underlying HIV-1 resistance to reverse transcriptase inhibitors.

Kierczak, Marcin; Dramiński, Michał; Koronacki, Jacek; Komorowski, Jan

A Monte Carlo approach to modeling post-translational modification sites using local physicochemical properties.

Kierczak, Marcin; Plewczyński, Dariusz; Andersson, Gunnar; Samuel, Lampa et al.