Alexey Siretskiy

The fallacy of the closest antenna: Towards an adequate view of device location in the mobile network

Ogulenko, Aleksey; Benenson, Itzhak; Toger, Marina; Östh, John et al.

Part of Computers, Environment and Urban Systems, 2022

• DOI for The fallacy of the closest antenna: Towards an adequate view of device location in the mobile network

GPCR-ModSim: A comprehensive web based solution for modeling G-protein coupled receptors

Esguerra, Mauricio; Siretskiy, Alexey; Bello, Xabier; Sallander, Jessica et al.

Part of Nucleic Acids Research, 2016

• DOI for GPCR-ModSim: A comprehensive web based solution for modeling G-protein coupled receptors
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Experiences with workflows for automating data-intensive bioinformatics

Spjuth, Ola; Bongcam-Rudloff, Erik; Carrasco Hernández, Guillermo; Forer, Lukas et al.

Part of Biology Direct, 2015

• DOI for Experiences with workflows for automating data-intensive bioinformatics

A quantitative assessment of the Hadoop framework for analyzing massively parallel DNA sequencing data

Siretskiy, Alexey; Sundqvist, Tore; Voznesenskiy, Mikhail; Spjuth, Ola

Part of GigaScience, 2015

• DOI for A quantitative assessment of the Hadoop framework for analyzing massively parallel DNA sequencing data
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Arabidopsis replacement histone variant H3.3 occupies promoters of regulated genes

Shu, Huan; Nakamura, Miyuki; Siretskiy, Alexey; Borghi, Lorenzo et al.

Part of Genome Biology, 2014

• DOI for Arabidopsis replacement histone variant H3.3 occupies promoters of regulated genes

The fallacy of the closest antenna: Towards an adequate view of device location in the mobile network

Ogulenko, Aleksey; Benenson, Itzhak; Toger, Marina; Östh, John et al.

Part of Computers, Environment and Urban Systems, 2022

• DOI for The fallacy of the closest antenna: Towards an adequate view of device location in the mobile network

GPCR-ModSim: A comprehensive web based solution for modeling G-protein coupled receptors

Esguerra, Mauricio; Siretskiy, Alexey; Bello, Xabier; Sallander, Jessica et al.

Part of Nucleic Acids Research, 2016

• DOI for GPCR-ModSim: A comprehensive web based solution for modeling G-protein coupled receptors
• Download full text (pdf) of GPCR-ModSim: A comprehensive web based solution for modeling G-protein coupled receptors

A quantitative assessment of the Hadoop framework for analyzing massively parallel DNA sequencing data

Siretskiy, Alexey; Sundqvist, Tore; Voznesenskiy, Mikhail; Spjuth, Ola

Part of GigaScience, 2015

• DOI for A quantitative assessment of the Hadoop framework for analyzing massively parallel DNA sequencing data
• Download full text (pdf) of A quantitative assessment of the Hadoop framework for analyzing massively parallel DNA sequencing data

Arabidopsis replacement histone variant H3.3 occupies promoters of regulated genes

Shu, Huan; Nakamura, Miyuki; Siretskiy, Alexey; Borghi, Lorenzo et al.

Part of Genome Biology, 2014

• DOI for Arabidopsis replacement histone variant H3.3 occupies promoters of regulated genes

An imprinted gene underlies postzygotic reproductive isolation in Arabidopsis thaliana

Kradolfer, David; Wolff, Philip; Jiang, Hua; Siretskiy, Alexey et al.

Part of Developmental Cell, p. 525-35, 2013

• DOI for An imprinted gene underlies postzygotic reproductive isolation in Arabidopsis thaliana

Role of non-uniform confinement in shape transitions of semi-stiff polymers

Siretskiy, Alexey; Elvingson, Christer

Part of Molecular Physics, p. 101-109, 2013

• DOI for Role of non-uniform confinement in shape transitions of semi-stiff polymers

Stepwise conformation transitions for a semi-stiff ring polymer confined in a conical trap induced by the increasing external field or by cone's opening angle variation

Siretskiy, Alexey; Elvingson, Christer; Vorontsov-Velyaminov, Pavel

Part of Nanosystems: Physics, Chemistry, Mathematics, p. 225-235, 2013

Distinct modes of DNA accessibility in plant chromatin.

Shu, Huan; Wildhaber, Thomas; Siretskiy, Alexey; Gruissem, Wilhelm et al.

Part of Nature communications, p. 1281, 2012

• DOI for Distinct modes of DNA accessibility in plant chromatin.

Determination of the equilibrium charge distribution for polyampholytes of different compactness in a single computer experiment

Siretskiy, Alexey; Elvingson, Christer; Khan, Malek O.

Part of Journal of Physics, p. 375102, 2011

• DOI for Determination of the equilibrium charge distribution for polyampholytes of different compactness in a single computer experiment

Method for sampling compact configurations for semistiff  polymers

Siretskiy, Alexey; Elvingson, Christer; Vorontsov-Velyaminov, Pavel; Khan, Malek

Part of Physical Review E. Statistical, Nonlinear, and Soft Matter Physics, 2011

• DOI for Method for sampling compact configurations for semistiff  polymers

Number fluctuations of the condensing agent affects the coil-toroid coexistence for semi-stiff polyelectrolytes

Siretskiy, Alexey; Khan, Malek

Part of Journal of Physics, 2010

• DOI for Number fluctuations of the condensing agent affects the coil-toroid coexistence for semi-stiff polyelectrolytes

Polymer shape transition by nonuniform confinement

Siretskiy, Alexey; Elvingson, Christer

Part of Journal of Physics

Experiences with workflows for automating data-intensive bioinformatics

Spjuth, Ola; Bongcam-Rudloff, Erik; Carrasco Hernández, Guillermo; Forer, Lukas et al.

Part of Biology Direct, 2015

• DOI for Experiences with workflows for automating data-intensive bioinformatics

Monte Carlo Simulations of the Equilibrium Properties of Semi-stiff Polymer Chains: Efficient Sampling from Compact to Extended Structures

Siretskiy, Alexey

2011

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HTSeq-Hadoop: Extending HTSeq for Massively Parallel Sequencing Data Analysis using Hadoop

Siretskiy, Alexey; Spjuth, Ola

Part of Proc. 10th International Conference on e-Science, p. 317-323, 2014

• DOI for HTSeq-Hadoop: Extending HTSeq for Massively Parallel Sequencing Data Analysis using Hadoop

Free Energy Monte Carlo Simulations on a Distributed Network

Czapla, Luke; Siretskiy, Alexey; Grime, John; Khan, Malek

Part of Applied Parallel and Scientific Computing, p. 1-2, 2012

• DOI for Free Energy Monte Carlo Simulations on a Distributed Network

Effects of the COVID-19 pandemic on population mobility under mild policies: Causal evidence from Sweden

Dahlberg, Matz; Edin, Per-Anders; Grönqvist, Erik; Lyhagen, Johan et al.