Tanel Punga
Senior Lecturer/Associate Professor at Department of Medical Biochemistry and Microbiology; Infection and Immunity; Tanel Punga
- Mobile phone:
- +46 73 320 30 95
- E-mail:
- tanel.punga@imbim.uu.se
- Visiting address:
- BMC
Husargatan 3
752 37 UPPSALA - Postal address:
- Box 582
751 23 UPPSALA
- CV:
- Download CV
Keywords
- epigenetics
- adenovirus
- rnai
Biography
CURRICULUM VITAE
TANEL PUNGA
Date of birth: July 9, 1974
1. Higher education qualification
September 1999-January 2004
Molecular Virology, Institute of Medical Biochemistry and Microbiology, Uppsala
University, Sweden
2. Doctoral degree
January 30, 2004
Ph.D. in Molecular Virology, Faculty of Medicine, Institute of Medical Biochemistry and
Microbiology, Uppsala University, Sweden.
Thesis title: “The Interaction of the Adenovirus E1B-55K Protein with a Histone Deacetylase
Complex:Its Importance in Regulation of P53 Protein Functions”. Supervisor: Prof Göran
Akusjärvi.
3. Postdoctoral positions
September 2008-August 2010
Friedrich Miescher Institute for Biomedical Research, Basel, Switzerland.
April 2004-March 2006
Ludwig Institute for Cancer Research, Uppsala, Sweden.
4. Qualification required for appointment as a docent
Docent in Molecular Virology at Uppsala University from May 2015
5. Current position
September 2014-present
Researcher, Institute of Medical Biochemistry and Microbiology, Uppsala University
6. Previous positions and periods of appointment
September 2010-August 2014
Assistant Professor (Forskarassistent), Institute of Medical Biochemistry and Microbiology,
Uppsala University
7. Interruption in research
Reason From To Extent Total
Parental leave 2006-04-01 2006-10-01 100% 6 months
Parental leave 2008-06-01 2008-09-01 100% 3 months
8. Supervision
PhD student: Sibel Ciftci 2012-2016
PhD student: Raviteja Inturi 2013-2017
PhD student: Kwangchol Kwang 2015-2019
Postdoc: Helen Bergquist 2014-2016
9. Other merits
A) Competitive grants
2015
Åke Wiberg Foundation grant at Uppsala University, Sweden
2014
Marcus Borgströms Foundation grant at Uppsala University, Sweden
Swedish Cancer Society (Cancerfonden) grant at Uppsala University, Sweden
2012
Swedish Research Council (Vetenskapsrådet) grant (VR-Unga Forskare) at Uppsala
University, Sweden
Swedish Cancer Society (Cancerfonden) grant at Uppsala University, Sweden
Åke Wiberg Foundation grant at Uppsala University, Sweden
2011
Swedish Society of Medicine grant at Uppsala University, Sweden
2010
P.O. Zetterlings Stiftelse grant at Uppsala University, Sweden
Forskarassistent position and grant via VR-supported Uppsala RNA Research Centre
(URRC), Uppsala University, Sweden
2008
Swedish Society for Medical Research (SSMF) Postdoctoral stipend at FMI, Switzerland
B) Awards and merits
2011
Research rating “Internationally High Standard” by the International Research Evaluation
Committee (KoF2011) at Uppsala University, Sweden
1996
Estonian Ministry of Education first prize for the B.Sc. Thesis.
Research
EPIGENETIC CONTROL DURING ADENOVIRUS INFECTION
The role of infectious agents in the pathogenesis of human disease has received an increased awareness over the past decades. In particular, virus infections appear to be associated with a number of malignant and metabolic disorders.
Epigenetics is a rapidly growing research field that investigates alterations in gene expression caused by mechanisms other than changes in DNA sequence. Virus infections usually induce various epigenetic modifications to ensure optimal viral replication in the recipient cells. Therefore, our group is interested in understanding how a virus infection alters cellular gene expression patterns by introducing epigenetic changes. We use human adenovirus as a model system for our studies. Using this model system we aim to understand what kind of epigenetic changes associate with lytic and persistent virus infections both in the virus genome as well as in the host cell genome. Our special interest is there concentrated on adenovirus “histone-like” protein named as pVII. At present we are characterizing the biochemical properties and functions of the pVII protein. In addition we study the epigenetic mechanisms involved in the onset of a devastating neurological disease Friedreich ataxia.
Characterization of the causative disruption or dysregulation of normal epigenetic signaling pathways involved in disease development will broaden the general understanding disease pathogenesis and may also lead to the innovation of novel therapeutic applications.

Publications
Recent publications
Part of iScience, p. 110564, 2024
- DOI for Serum protein biomarker profile distinguishes acetylcholine receptor antibody seropositive myasthenia gravis patients from healthy controls.
- Download full text (pdf) of Serum protein biomarker profile distinguishes acetylcholine receptor antibody seropositive myasthenia gravis patients from healthy controls.
Complex regulation of mitochondrial signaling by human adenovirus minor capsid protein VI
Part of Journal of Virology, 2024
Part of Journal of Biological Chemistry, 2023
- DOI for The RNA-binding protein ZC3H11A interacts with the nuclear poly(A)-binding protein PABPN1 and alters polyadenylation of viral transcripts
- Download full text (pdf) of The RNA-binding protein ZC3H11A interacts with the nuclear poly(A)-binding protein PABPN1 and alters polyadenylation of viral transcripts
Fragile X-Related Protein FXR1 Controls Human Adenovirus Capsid mRNA Metabolism
Part of Journal of Virology, 2023
Structural Insights into Human Adenovirus Type 4 Virus-Associated RNA I
Part of International Journal of Molecular Sciences, 2022
- DOI for Structural Insights into Human Adenovirus Type 4 Virus-Associated RNA I
- Download full text (pdf) of Structural Insights into Human Adenovirus Type 4 Virus-Associated RNA I
All publications
Articles in journal
Part of iScience, p. 110564, 2024
- DOI for Serum protein biomarker profile distinguishes acetylcholine receptor antibody seropositive myasthenia gravis patients from healthy controls.
- Download full text (pdf) of Serum protein biomarker profile distinguishes acetylcholine receptor antibody seropositive myasthenia gravis patients from healthy controls.
Complex regulation of mitochondrial signaling by human adenovirus minor capsid protein VI
Part of Journal of Virology, 2024
Part of Journal of Biological Chemistry, 2023
- DOI for The RNA-binding protein ZC3H11A interacts with the nuclear poly(A)-binding protein PABPN1 and alters polyadenylation of viral transcripts
- Download full text (pdf) of The RNA-binding protein ZC3H11A interacts with the nuclear poly(A)-binding protein PABPN1 and alters polyadenylation of viral transcripts
Fragile X-Related Protein FXR1 Controls Human Adenovirus Capsid mRNA Metabolism
Part of Journal of Virology, 2023
Structural Insights into Human Adenovirus Type 4 Virus-Associated RNA I
Part of International Journal of Molecular Sciences, 2022
- DOI for Structural Insights into Human Adenovirus Type 4 Virus-Associated RNA I
- Download full text (pdf) of Structural Insights into Human Adenovirus Type 4 Virus-Associated RNA I
Part of Viruses, 2022
- DOI for Next-Generation Sequencing Analysis of CpG Methylation of a Tumor Suppressor Gene SHP-1 Promoter in Stable Cell Lines and HCV-Positive Patients
- Download full text (pdf) of Next-Generation Sequencing Analysis of CpG Methylation of a Tumor Suppressor Gene SHP-1 Promoter in Stable Cell Lines and HCV-Positive Patients
ZC3H11A loss of function enhances NF-κB signaling through defective IκBα protein expression
Part of Frontiers in Immunology, 2022
- DOI for ZC3H11A loss of function enhances NF-κB signaling through defective IκBα protein expression
- Download full text (pdf) of ZC3H11A loss of function enhances NF-κB signaling through defective IκBα protein expression
Part of Viruses, 2022
- DOI for Activation of the Ca2+/NFAT pathway by assembly of hepatitis C virus core protein into nucleocapsid-like particles
- Download full text (pdf) of Activation of the Ca2+/NFAT pathway by assembly of hepatitis C virus core protein into nucleocapsid-like particles
Part of Viruses, p. 2514-2514, 2021
- DOI for Hepatitis C Virus Core Protein Down-Regulates Expression of Src-Homology 2 Domain Containing Protein Tyrosine Phosphatase by Modulating Promoter DNA Methylation
- Download full text (pdf) of Hepatitis C Virus Core Protein Down-Regulates Expression of Src-Homology 2 Domain Containing Protein Tyrosine Phosphatase by Modulating Promoter DNA Methylation
Part of Frontiers in Immunology, 2020
- DOI for Estrogen Receptor, Inflammatory, and FOXO Transcription Factors Regulate Expression of Myasthenia Gravis-Associated Circulating microRNAs
- Download full text (pdf) of Estrogen Receptor, Inflammatory, and FOXO Transcription Factors Regulate Expression of Myasthenia Gravis-Associated Circulating microRNAs
Adenovirus in the omics era - a multi-pronged strategy.
Part of FEBS Letters, p. 1879-1890, 2020
miR-1933-3p is upregulated in skeletal muscles of MuSK+ EAMG mice and affects Impa1 and Mrpl27
Part of Neuroscience research, p. 46-52, 2020
Part of Journal of Virology, 2019
Thymectomy lowers the myasthenia gravis biomarker miR-150-5p
Part of Neurology, 2018
- DOI for Thymectomy lowers the myasthenia gravis biomarker miR-150-5p
- Download full text (pdf) of Thymectomy lowers the myasthenia gravis biomarker miR-150-5p
In Situ Detection of Adenovirus DNA and mRNA in Individual Cells.
Part of Current protocols in microbiology, 2018
Part of Journal of Virology, 2018
Part of Journal of Virology, 2017
Part of PLOS ONE, 2017
- DOI for Expression profile of Epstein-Barr virus and human adenovirus small RNAs in tonsillar B and T lymphocytes
- Download full text (pdf) of Expression profile of Epstein-Barr virus and human adenovirus small RNAs in tonsillar B and T lymphocytes
Part of Nucleic Acids Research, p. 1731-1742, 2017
- DOI for The adenovirus L4-22K protein regulates transcription and RNA splicing via a sequence-specific single-stranded RNA binding
- Download full text (pdf) of The adenovirus L4-22K protein regulates transcription and RNA splicing via a sequence-specific single-stranded RNA binding
Clamping of RNA with PNA enables targeting of microRNA
Part of Organic and biomolecular chemistry, p. 5210-5213, 2016
Part of PLOS ONE, 2016
- DOI for Distribution and Molecular Characterization of Human Adenovirus and Epstein-Barr Virus Infections in Tonsillar Lymphocytes Isolated from Patients Diagnosed with Tonsillar Diseases
- Download full text (pdf) of Distribution and Molecular Characterization of Human Adenovirus and Epstein-Barr Virus Infections in Tonsillar Lymphocytes Isolated from Patients Diagnosed with Tonsillar Diseases
Disease specific enrichment of circulating let-7 family microRNA in MuSK+ myasthenia gravis.
Part of Journal of Neuroimmunology, p. 21-26, 2016
- DOI for Disease specific enrichment of circulating let-7 family microRNA in MuSK+ myasthenia gravis.
- Download full text (pdf) of Disease specific enrichment of circulating let-7 family microRNA in MuSK+ myasthenia gravis.
Efficient Isolation Protocol for B and T Lymphocytes from Human Palatine Tonsils
Part of Journal of Visualized Experiments, 2015
Part of Virus Research, p. 133-140, 2015
Disease specific signature of circulating miR-150-5p and miR-21-5p in myasthenia gravis patients
Part of Journal of the Neurological Sciences, p. 90-96, 2015
- DOI for Disease specific signature of circulating miR-150-5p and miR-21-5p in myasthenia gravis patients
- Download full text (pdf) of Disease specific signature of circulating miR-150-5p and miR-21-5p in myasthenia gravis patients
Part of Journal of Biomolecular Screening, p. 760-767, 2015
Part of Virology, p. 25-35, 2015
Part of FEBS Letters, p. 1383-1388, 2015
A splice variant of the human phosphohistidine phosphatase 1 (PHPT1) is degraded by the proteasome
Part of International Journal of Biochemistry and Cell Biology, p. 69-75, 2014
- DOI for A splice variant of the human phosphohistidine phosphatase 1 (PHPT1) is degraded by the proteasome
- Download full text (pdf) of A splice variant of the human phosphohistidine phosphatase 1 (PHPT1) is degraded by the proteasome
Part of PLOS ONE, 2014
- DOI for Small RNA Sequence Analysis of Adenovirus VA RNA-Derived MiRNAs Reveals an Unexpected Serotype-Specific Difference in Structure and Abundance
- Download full text (pdf) of Small RNA Sequence Analysis of Adenovirus VA RNA-Derived MiRNAs Reveals an Unexpected Serotype-Specific Difference in Structure and Abundance
Circulating miRNAs in myasthenia gravis: miR-150-5p as a new potential biomarker
Part of Annals of clinical and translational neurology, p. 49-58, 2014
Adenovirus Precursor pVII Protein Stability Is Regulated By Its Propeptide Sequence
Part of PLOS ONE, 2013
- DOI for Adenovirus Precursor pVII Protein Stability Is Regulated By Its Propeptide Sequence
- Download full text (pdf) of Adenovirus Precursor pVII Protein Stability Is Regulated By Its Propeptide Sequence
Part of Neuroscience research, p. 102-109, 2013
Part of Nucleic Acids Research, p. 4802-4812, 2013
- DOI for The adenovirus VA RNA-derived miRNAs are not essential for lytic virus growth in tissue culture cells
- Download full text (pdf) of The adenovirus VA RNA-derived miRNAs are not essential for lytic virus growth in tissue culture cells
Part of PLOS ONE, 2012
- DOI for Two Cellular Protein Kinases, DNA-PK and PKA, Phosphorylate the Adenoviral L4-33K Protein and Have Opposite Effects on L1 Alternative RNA Splicing
- Download full text (pdf) of Two Cellular Protein Kinases, DNA-PK and PKA, Phosphorylate the Adenoviral L4-33K Protein and Have Opposite Effects on L1 Alternative RNA Splicing
Dicer associates with chromatin to repress genome activity in Schizosaccharomyces pombe
Part of Nature Structural & Molecular Biology, p. 94-99, 2011
Long intronic GAA repeats causing Friedreich ataxia impede transcription elongation
Part of EMBO Molecular Medicine, p. 120-129, 2010
Part of The FEBS Journal, p. 1878-1890, 2009
Hyperphosphorylation regulates the activity of SREBP1 during mitosis
Part of Proceedings of the National Academy of Sciences of the United States of America, p. 11681-11686, 2005
YY1 inhibits the activation of the p53 tumor suppressor in response to genotoxic stress
Part of Proceedings of the National Academy of Sciences of the United States of America, p. 12165-12170, 2004
Part of FEBS Letters, p. 214-218, 2003
Functional inactivation of the SR family of splicing factors during a vaccinia virus infection
Part of EMBO Reports, p. 1088-1093, 2002
The adenovirus-2 E1B-55K protein interacts with a mSin3A/histone deacetylase 1 complex
Part of FEBS Letters, p. 248-252, 2000
Articles, review/survey
Circulating miRNAs as Potential Biomarkers in Myasthenia Gravis: Tools for Personalized Medicine
Part of Frontiers in Immunology, 2020
- DOI for Circulating miRNAs as Potential Biomarkers in Myasthenia Gravis: Tools for Personalized Medicine
- Download full text (pdf) of Circulating miRNAs as Potential Biomarkers in Myasthenia Gravis: Tools for Personalized Medicine
Synthesis, Structure, and Function of Human Adenovirus Small Non-Coding RNAs
Part of Viruses, 2020
- DOI for Synthesis, Structure, and Function of Human Adenovirus Small Non-Coding RNAs
- Download full text (pdf) of Synthesis, Structure, and Function of Human Adenovirus Small Non-Coding RNAs
Role of CCCH-Type Zinc Finger Proteins in Human Adenovirus Infections
Part of Viruses, 2020
- DOI for Role of CCCH-Type Zinc Finger Proteins in Human Adenovirus Infections
- Download full text (pdf) of Role of CCCH-Type Zinc Finger Proteins in Human Adenovirus Infections
Circulating microRNAs as potential biomarkers in myasthenia gravis patients.
Part of Annals of the New York Academy of Sciences, p. 33-40, 2018
Old and new functions for the adenovirus virus-associated RNAs
Part of Future Virology, p. 343-356, 2013