Lars Feuk
- Telephone:
- +46 18 471 48 27
- Mobile phone:
- +46 70 167 94 25
- E-mail:
- lars.feuk@igp.uu.se
- Visiting address:
- BMC
Husargatan 3
751 22 Uppsala - Postal address:
- Box 815
751 08 Uppsala
Publications
Recent publications
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Nallo: a Nextflow pipeline for comprehensive human long-read genome analysis
Part of Bioinformatics, 2026
- DOI for Nallo: a Nextflow pipeline for comprehensive human long-read genome analysis
- Download full text (pdf) of Nallo: a Nextflow pipeline for comprehensive human long-read genome analysis
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Flexible and rapid validation of structural variation using adaptive sampling
Part of European Journal of Human Genetics, p. 649-657, 2026
- DOI for Flexible and rapid validation of structural variation using adaptive sampling
- Download full text (pdf) of Flexible and rapid validation of structural variation using adaptive sampling
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Acute Vestibular Syndrome Unmasking an RFC1-Spectrum Disorder
Part of Neurology Genetics, 2025
- DOI for Acute Vestibular Syndrome Unmasking an RFC1-Spectrum Disorder
- Download full text (pdf) of Acute Vestibular Syndrome Unmasking an RFC1-Spectrum Disorder
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A national long-read sequencing study on chromosomal rearrangements uncovers hidden complexities
Part of Genome Research, p. 1774-1784, 2024
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Part of Scientific Reports, 2024
- DOI for Long-read sequencing and optical mapping generates near T2T assemblies that resolves a centromeric translocation
- Download full text (pdf) of Long-read sequencing and optical mapping generates near T2T assemblies that resolves a centromeric translocation
All publications
Articles in journal
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Nallo: a Nextflow pipeline for comprehensive human long-read genome analysis
Part of Bioinformatics, 2026
- DOI for Nallo: a Nextflow pipeline for comprehensive human long-read genome analysis
- Download full text (pdf) of Nallo: a Nextflow pipeline for comprehensive human long-read genome analysis
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Flexible and rapid validation of structural variation using adaptive sampling
Part of European Journal of Human Genetics, p. 649-657, 2026
- DOI for Flexible and rapid validation of structural variation using adaptive sampling
- Download full text (pdf) of Flexible and rapid validation of structural variation using adaptive sampling
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Acute Vestibular Syndrome Unmasking an RFC1-Spectrum Disorder
Part of Neurology Genetics, 2025
- DOI for Acute Vestibular Syndrome Unmasking an RFC1-Spectrum Disorder
- Download full text (pdf) of Acute Vestibular Syndrome Unmasking an RFC1-Spectrum Disorder
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A national long-read sequencing study on chromosomal rearrangements uncovers hidden complexities
Part of Genome Research, p. 1774-1784, 2024
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Part of Scientific Reports, 2024
- DOI for Long-read sequencing and optical mapping generates near T2T assemblies that resolves a centromeric translocation
- Download full text (pdf) of Long-read sequencing and optical mapping generates near T2T assemblies that resolves a centromeric translocation
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Resolving complex duplication variants in autism spectrum disorder using long-read genome sequencing
Part of Genome Research, p. 1763-1773, 2024
- DOI for Resolving complex duplication variants in autism spectrum disorder using long-read genome sequencing
- Download full text (pdf) of Resolving complex duplication variants in autism spectrum disorder using long-read genome sequencing
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A multiomic characterization of the leukemia cell line REH using short- and long-read sequencing
Part of Life Science Alliance, 2024
- DOI for A multiomic characterization of the leukemia cell line REH using short- and long-read sequencing
- Download full text (pdf) of A multiomic characterization of the leukemia cell line REH using short- and long-read sequencing
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Part of International Journal of Molecular Sciences, 2024
- DOI for From SARS-CoV-2 to Global Preparedness: A Graphical Interface for Standardised High-Throughput Bioinformatics Analysis in Pandemic Scenarios and Surveillance of Drug Resistance
- Download full text (pdf) of From SARS-CoV-2 to Global Preparedness: A Graphical Interface for Standardised High-Throughput Bioinformatics Analysis in Pandemic Scenarios and Surveillance of Drug Resistance
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Long-read whole-genome analysis of human single cells
Part of Nature Communications, 2023
- DOI for Long-read whole-genome analysis of human single cells
- Download full text (pdf) of Long-read whole-genome analysis of human single cells
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Genomic, transcriptomic and epigenomic sequencing data of the B-cell leukemia cell line REH
Part of BMC Research Notes, 2023
- DOI for Genomic, transcriptomic and epigenomic sequencing data of the B-cell leukemia cell line REH
- Download full text (pdf) of Genomic, transcriptomic and epigenomic sequencing data of the B-cell leukemia cell line REH
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Part of International Journal of Molecular Sciences, 2022
- DOI for Multi-Omic Investigations of a 17-19 Translocation Links MINK1 Disruption to Autism, Epilepsy and Osteoporosis
- Download full text (pdf) of Multi-Omic Investigations of a 17-19 Translocation Links MINK1 Disruption to Autism, Epilepsy and Osteoporosis
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Part of Nature Communications, 2022
- DOI for CRISPR-Cas9 induces large structural variants at on-target and off-target sites in vivo that segregate across generations
- Download full text (pdf) of CRISPR-Cas9 induces large structural variants at on-target and off-target sites in vivo that segregate across generations
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DLG4-related synaptopathy: a new rare brain disorder
Part of Genetics in Medicine, p. 888-899, 2021
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Part of Human Genetics, p. 775-790, 2021
- DOI for Hybrid sequencing resolves two germline ultra-complex chromosomal rearrangements consisting of 137 breakpoint junctions in a single carrier
- Download full text (pdf) of Hybrid sequencing resolves two germline ultra-complex chromosomal rearrangements consisting of 137 breakpoint junctions in a single carrier
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Part of Scientific Reports, 2021
- DOI for Characterization of the nuclear and cytosolic transcriptomes in human brain tissue reveals new insights into the subcellular distribution of RNA transcripts
- Download full text (pdf) of Characterization of the nuclear and cytosolic transcriptomes in human brain tissue reveals new insights into the subcellular distribution of RNA transcripts
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Part of Genes, 2021
- DOI for Transcriptome analysis of post-mortem brain tissue reveals up-regulation of the complement cascade in a subgroup of schizophrenia patients
- Download full text (pdf) of Transcriptome analysis of post-mortem brain tissue reveals up-regulation of the complement cascade in a subgroup of schizophrenia patients
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R.ROSETTA: an interpretable machine learning framework
Part of BMC Bioinformatics, 2021
- DOI for R.ROSETTA: an interpretable machine learning framework
- Download full text (pdf) of R.ROSETTA: an interpretable machine learning framework
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Interpretable Machine Learning Reveals Dissimilarities Between Subtypes of Autism Spectrum Disorder
Part of Frontiers in Genetics, 2021
- DOI for Interpretable Machine Learning Reveals Dissimilarities Between Subtypes of Autism Spectrum Disorder
- Download full text (pdf) of Interpretable Machine Learning Reveals Dissimilarities Between Subtypes of Autism Spectrum Disorder
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Part of RNA, p. 1654-1666, 2020
- DOI for Identification and rescue of a tRNA wobble inosine deficiency causing intellectual disability disorder
- Download full text (pdf) of Identification and rescue of a tRNA wobble inosine deficiency causing intellectual disability disorder
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Whole genome sequencing of familial isolated oesophagus atresia uncover shared structural variants
Part of BMC Medical Genomics, 2020
- DOI for Whole genome sequencing of familial isolated oesophagus atresia uncover shared structural variants
- Download full text (pdf) of Whole genome sequencing of familial isolated oesophagus atresia uncover shared structural variants
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Amplification-free long-read sequencing reveals unforeseen CRISPR-Cas9 off-target activity
Part of Genome Biology, 2020
- DOI for Amplification-free long-read sequencing reveals unforeseen CRISPR-Cas9 off-target activity
- Download full text (pdf) of Amplification-free long-read sequencing reveals unforeseen CRISPR-Cas9 off-target activity
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Part of Genes, 2020
- DOI for Evaluation of Single-Molecule Sequencing Technologies for Structural Variant Detection in Two Swedish Human Genomes
- Download full text (pdf) of Evaluation of Single-Molecule Sequencing Technologies for Structural Variant Detection in Two Swedish Human Genomes
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Exploring autoantibody signatures in brain tissue from patients with severe mental illness
Part of Translational Psychiatry, 2020
- DOI for Exploring autoantibody signatures in brain tissue from patients with severe mental illness
- Download full text (pdf) of Exploring autoantibody signatures in brain tissue from patients with severe mental illness
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Part of Scientific Reports, 2020
- DOI for Transcriptome analysis of fibroblasts from schizophrenia patients reveals differential expression of schizophrenia-related genes
- Download full text (pdf) of Transcriptome analysis of fibroblasts from schizophrenia patients reveals differential expression of schizophrenia-related genes
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Part of Clinical Genetics, p. 436-439, 2019
- DOI for Whole genome sequencing of consanguineous families reveals novel pathogenic variants in intellectual disability
- Download full text (pdf) of Whole genome sequencing of consanguineous families reveals novel pathogenic variants in intellectual disability
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Part of BMC Medical Genomics, 2019
- DOI for Linkage and exome analysis implicate multiple genes in non-syndromic intellectual disability in a large Swedish family
- Download full text (pdf) of Linkage and exome analysis implicate multiple genes in non-syndromic intellectual disability in a large Swedish family
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Novel Y-Chromosome Long Non-Coding RNAs Expressed in Human Male CNS During Early Development
Part of Frontiers in Genetics, 2019
- DOI for Novel Y-Chromosome Long Non-Coding RNAs Expressed in Human Male CNS During Early Development
- Download full text (pdf) of Novel Y-Chromosome Long Non-Coding RNAs Expressed in Human Male CNS During Early Development
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Part of BMC Biotechnology, 2019
- DOI for Copy number determination of the gene for the human pancreatic polypeptide receptor NPY4R using read depth analysis and droplet digital PCR.
- Download full text (pdf) of Copy number determination of the gene for the human pancreatic polypeptide receptor NPY4R using read depth analysis and droplet digital PCR.
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Part of Journal of Psychiatric Research, p. 41-47, 2019
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Expression profiling and in situ screening of circular RNAs in human tissues
Part of Scientific Reports, 2018
- DOI for Expression profiling and in situ screening of circular RNAs in human tissues
- Download full text (pdf) of Expression profiling and in situ screening of circular RNAs in human tissues
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Part of Human Mutation, p. 1262-1272, 2018
- DOI for Detailed analysis of HTT repeat elements in human blood using targeted amplification-free long-read sequencing
- Download full text (pdf) of Detailed analysis of HTT repeat elements in human blood using targeted amplification-free long-read sequencing
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Part of PLOS ONE, 2018
- DOI for Copy number of pancreatic polypeptide receptor gene NPY4R correlates with body mass index and waist circumference
- Download full text (pdf) of Copy number of pancreatic polypeptide receptor gene NPY4R correlates with body mass index and waist circumference
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Part of Genes, 2018
- DOI for De Novo Assembly of Two Swedish Genomes Reveals Missing Segments from the Human GRCh38 Reference and Improves Variant Calling of Population-Scale Sequencing Data
- Download full text (pdf) of De Novo Assembly of Two Swedish Genomes Reveals Missing Segments from the Human GRCh38 Reference and Improves Variant Calling of Population-Scale Sequencing Data
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Exome sequencing reveals NAA15 and PUF60 as candidate genes associated with intellectual disability
Part of American Journal of Medical Genetics Part B, p. 10-20, 2018
- DOI for Exome sequencing reveals NAA15 and PUF60 as candidate genes associated with intellectual disability
- Download full text (pdf) of Exome sequencing reveals NAA15 and PUF60 as candidate genes associated with intellectual disability
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A 3-way hybrid approach to generate a new high-quality chimpanzee reference genome (Pan_tro_3.0)
Part of GigaScience, p. 1-6, 2017
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Reduced cell surface levels of GPI-linked markers in a new case with PIGG loss of function
Part of Human Mutation, p. 1394-1401, 2017
- DOI for Reduced cell surface levels of GPI-linked markers in a new case with PIGG loss of function
- Download full text (pdf) of Reduced cell surface levels of GPI-linked markers in a new case with PIGG loss of function
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Part of European Journal of Human Genetics, p. 1253-1260, 2017
- DOI for SweGen: a whole-genome data resource of genetic variability in a cross-section of the Swedish population
- Download full text (pdf) of SweGen: a whole-genome data resource of genetic variability in a cross-section of the Swedish population
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Mutations in HECW2 are associated with intellectual disability and epilepsy
Part of Journal of Medical Genetics, p. 697-704, 2016
- DOI for Mutations in HECW2 are associated with intellectual disability and epilepsy
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Part of Biology of Sex Differences, 2016
- DOI for Spatial sexual dimorphism of X and Y homolog gene expression in the human central nervous system during early male development
- Download full text (pdf) of Spatial sexual dimorphism of X and Y homolog gene expression in the human central nervous system during early male development
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Part of Twin Research and Human Genetics, p. 97-103, 2016
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A Role for the Chromatin-Remodeling Factor BAZ1A in Neurodevelopment
Part of Human Mutation, p. 964-975, 2016
- DOI for A Role for the Chromatin-Remodeling Factor BAZ1A in Neurodevelopment
- Download full text (pdf) of A Role for the Chromatin-Remodeling Factor BAZ1A in Neurodevelopment
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Part of Cellular Reprogramming, p. 327-337, 2015
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Deleterious mutation in FDX1L gene is associated with a novel mitochondrial muscle myopathy
Part of European Journal of Human Genetics, p. 902-906, 2014
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Abolished InsP3R2 function inhibits sweat secretion in both humans and mice
Part of Journal of Clinical Investigation, p. 4773-4780, 2014
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The Database of Genomic Variants: a curated collection of structural variation in the human genome
Part of Nucleic Acids Research, 2014
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Part of BMC Biotechnology, p. 99, 2013
- DOI for Efficient cellular fractionation improves RNA sequencing analysis of mature and nascent transcripts from human tissues
- Download full text (pdf) of Efficient cellular fractionation improves RNA sequencing analysis of mature and nascent transcripts from human tissues
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Genome-wide Association Study of Susceptibility Loci for Cervical Cancer
Part of Journal of the National Cancer Institute, p. 624-633, 2013
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Exome RNA sequencing reveals rare and novel alternative transcripts
Part of Nucleic Acids Research, 2013
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Mechanisms of Formation of Structural Variation in a Fully Sequenced Human Genome
Part of Human Mutation, p. 345-354, 2013
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Part of Human Mutation, p. 572-577, 2013
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RNA-binding protein QKI regulates Glial fibrillary acidic protein expression in human astrocytes
Part of Human Molecular Genetics, p. 1373-1382, 2013
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Part of BMC Medical Genetics, p. 123, 2012
- DOI for Genome-wide sequencing for the identification of rearrangements associated with Tourette syndrome and obsessive-compulsive disorder
- Download full text (pdf) of Genome-wide sequencing for the identification of rearrangements associated with Tourette syndrome and obsessive-compulsive disorder
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Part of American Journal of Human Genetics, p. 809-820, 2012
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Intractable epilepsy of infancy due to homozygous mutation in the EFHC1 gene
Part of Epilepsia, p. 1436-1440, 2012
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Diagnostic Interpretation of Array Data Using Public Databases and Internet Sources
Part of Human Mutation, p. 930-940, 2012
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Part of American Journal of Human Genetics, p. 518-523, 2012
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Part of Nature Biotechnology, p. 512-521, 2011
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Characterization of Copy Number-Stable Regions in the Human Genome
Part of Human Mutation, p. 947-955, 2011
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Part of Nature Structural & Molecular Biology, p. 1435-1440, 2011
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Inversion variants in the human genome: role in disease and genome architecture
Part of Genome Medicine, 2010
- DOI for Inversion variants in the human genome: role in disease and genome architecture
- Download full text (pdf) of Inversion variants in the human genome: role in disease and genome architecture
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Public data archives for genomic structural variation
Part of Nature Genetics, p. 813-814, 2010
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Part of Nature, p. 713-720, 2010
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Part of Clinical Genetics, p. 478-483, 2010
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Part of American Journal of Human Genetics, p. 749-764, 2010
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Origins and functional impact of copy number variation in the human genome
Part of Nature, p. 704-712, 2010
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Global and unbiased detection of splice junctions from RNA-seq data
Part of Genome Biology, 2010
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Identification of novel exons and transcribed regions by chimpanzee transcriptome sequencing
Part of Genome Biology, 2010
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Towards a comprehensive structural variation map of an individual human genome
Part of Genome biology, 2010
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Part of Nature, p. 168-170, 2009
Chapters in book
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Part of Brain Transcriptome, p. 95-125, Elsevier, 2014