Jarl Wikberg

Towards Predicting the Cytochrome P450 Modulation: From QSAR to proteochemometric modeling.

Shoombuatong, Watshara; Prathipati, Philip; Prachayasittikul, Veda; Schaduangrat, Nalini et al.

Part of Current drug metabolism, p. 540-555, 2017

DOI for Towards Predicting the Cytochrome P450 Modulation: From QSAR to proteochemometric modeling.

PepBio: predicting the bioactivity of host defense peptides

Simeon, Saw; Li, Hao; Win, Thet Su; Malik, Aijaz Ahmad et al.

Part of RSC Advances, p. 35119-35134, 2017

DOI for PepBio: predicting the bioactivity of host defense peptides

Melanocortin 2, 3 and 4 Receptor Gene Expressions are Downregulated in CD8(+) T Cytotoxic Lymphocytes and CD19(+) B Lymphocytes in Rheumatoid Arthritis Responding to TNF-alfa Inhibition

Andersen, M.; Nagaev, I.; Meyer, M. K.; Nagaeva, O. et al.

Part of Scandinavian Journal of Immunology, p. 31-39, 2017

DOI for Melanocortin 2, 3 and 4 Receptor Gene Expressions are Downregulated in CD8(+) T Cytotoxic Lymphocytes and CD19(+) B Lymphocytes in Rheumatoid Arthritis Responding to TNF-alfa Inhibition

HemoPred: a web server for predicting the hemolytic activity of peptides

Win, Thet Su; Malik, Aijaz Ahmad; Prachayasittikul, Virapong; Wikberg, Jarl E. S. et al.

Part of Future Medicinal Chemistry, p. 275-291, 2017

DOI for HemoPred: a web server for predicting the hemolytic activity of peptides

CryoProtect: A Web Server for Classifying Antifreeze Proteins from Nonantifreeze Proteins

Pratiwi, Reny; Malik, Aijaz Ahmad; Schaduangrat, Nalini; Prachayasittikul, Virapong et al.

Part of Journal of Chemistry, 2017

The Melanocortin System Is Responsive in Disease Driving Immune Cells in Rheumatoid Arthritis and May Offer A Pathway To Curative Treatment

Andersen, M.; Meyer, M. K.; Nagaev, I.; Nagaeva, O. et al.

Part of Annals of the Rheumatic Diseases, p. 903-904, 2016

DOI for The Melanocortin System Is Responsive in Disease Driving Immune Cells in Rheumatoid Arthritis and May Offer A Pathway To Curative Treatment

Resistin Gene Transcription Is Regulated in Adaptive and Innate Immunity in Rheumatoid Arthritis

Andersen, M.; Meyer, M. K.; Nagaev, I.; Nagaeva, O. et al.

Part of Annals of the Rheumatic Diseases, p. 904-904, 2016

DOI for Resistin Gene Transcription Is Regulated in Adaptive and Innate Immunity in Rheumatoid Arthritis

Origin of aromatase inhibitory activity via proteochemometric modeling

Simeon, Saw; Spjuth, Ola; Lapins, Maris; Nabu, Sunanta et al.

Part of PeerJ, 2016

Probing the origins of human acetylcholinesterase inhibition via QSAR modeling and molecular docking

Simeon, Saw; Anuwongcharoen, Nuttapat; Shoombuatong, Watshara; Malik, Aijaz Ahmad et al.

Part of PeerJ, 2016

Large-scale ligand-based predictive modelling using support vector machines

Alvarsson, Jonathan; Lampa, Samuel; Schaal, Wesley; Andersson, Claes et al.

Part of Journal of Cheminformatics, 2016

osFP: a web server for predicting the oligomeric states of fluorescent proteins

Simeon, Saw; Shoombuatong, Watshara; Anuwongcharoen, Nuttapat; Preeyanon, Likit et al.

Part of Journal of Cheminformatics, 2016

Resistin Gene Expression is Downregulated in CD4(+) T Helper Lymphocytes and CD14(+) Monocytes in Rheumatoid Arthritis Responding to TNF-alpha Inhibition

Nagaev, I.; Andersen, M.; Olesen, M. K.; Nagaeva, O. et al.

Part of Scandinavian Journal of Immunology, p. 229-236, 2016

DOI for Resistin Gene Expression is Downregulated in CD4(+) T Helper Lymphocytes and CD14(+) Monocytes in Rheumatoid Arthritis Responding to TNF-alpha Inhibition

New Polyfunctional Phragmalin Limonoids from Neobeguea mahafalensis

Fossen, Torgils; Yahorau, Aleh; Yahorava, Sviatlana; Raharinjato, Fanja et al.

Part of Planta Medica, p. 1087-1095, 2016

DOI for New Polyfunctional Phragmalin Limonoids from Neobeguea mahafalensis

Extending proteochemometric modeling for unraveling the sorption behavior of compound-soil interaction

Shoombuatong, Watshara; Nabu, Sunanta; Simeon, Saw; Prachayasittikul, Virapong et al.

Part of Chemometrics and Intelligent Laboratory Systems, p. 219-227, 2016

DOI for Extending proteochemometric modeling for unraveling the sorption behavior of compound-soil interaction

Proteochemometric model for predicting the inhibition of penicillin-binding proteins

Nabu, Sunanta; Nantasenamat, Chanin; Owasirikul, Wiwat; Lawung, Ratana et al.

Part of Journal of Computer-Aided Molecular Design, p. 127-141, 2015

DOI for Proteochemometric model for predicting the inhibition of penicillin-binding proteins

Adalimumab (Humira (R)) normalizes melanocortin receptor subtype 2, 3, and 4 expression in CD8+, CD14+, and CD19+leucocyte subsets in rheumatoid arthritis

Andersen, M.; Olesen, M. K.; Nagaev, I.; Nagaeva, O. et al.

Part of Scandinavian Journal of Rheumatology, p. 25-26, 2014

Illuminating the Origins of Spectral Properties of Green Fluorescent Proteins via Proteochemometric and Molecular Modeling

Nantasenamat, Chanin; Simeon, Saw; Owasirikul, Wiwat; Songtawee, Napat et al.

Part of Journal of Computational Chemistry, p. 1951-1966, 2014

DOI for Illuminating the Origins of Spectral Properties of Green Fluorescent Proteins via Proteochemometric and Molecular Modeling

Libiguins A and B: Novel Phragmalin Limonoids Isolated from Neobeguea mahafalensis Causing Profound Enhancement of Sexual Activity

Razafimahefa, Solofoniaina; Mutulis, Felikss; Mutule, Ilze; Liepinsh, Edvards et al.

Part of Planta Medica, p. 306-314, 2014

DOI for Libiguins A and B: Novel Phragmalin Limonoids Isolated from Neobeguea mahafalensis Causing Profound Enhancement of Sexual Activity

Ligand-Based Target Prediction with Signature Fingerprints

Alvarsson, Jonathan; Eklund, Martin; Engkvist, Ola; Spjuth, Ola et al.

Part of Journal of Chemical Information and Modeling, p. 2647-2653, 2014

DOI for Ligand-Based Target Prediction with Signature Fingerprints

Benchmarking Study of Parameter Variation When Using Signature Fingerprints Together with Support Vector Machines

Alvarsson, Jonathan; Eklund, Martin; Andersson, Claes; Carlsson, Lars et al.

Part of Journal of Chemical Information and Modeling, p. 3211-3217, 2014

DOI for Benchmarking Study of Parameter Variation When Using Signature Fingerprints Together with Support Vector Machines

Semisynthesis of Libiguin A and Its Analogues by Trans-Lactonization of Phragmalin

Grigorjeva, Liene; Liepinsh, Edvards; Razafimahefa, Solofoniaina; Yahorau, Aleh et al.

Part of Journal of Organic Chemistry, p. 4148-4153, 2014

DOI for Semisynthesis of Libiguin A and Its Analogues by Trans-Lactonization of Phragmalin

Bioclipse-R: Integrating management and visualization of life science data with statistical analysis

Spjuth, Ola; Georgiev, Valentin; Carlsson, Lars; Alvarsson, Jonathan et al.

Part of Bioinformatics, p. 286-289, 2013

DOI for Bioclipse-R: Integrating management and visualization of life science data with statistical analysis

A Unified Proteochemometric Model for Prediction of Inhibition of Cytochrome P450 Isoforms

Lapins, Maris; Worachartcheewan, Apilak; Spjuth, Ola; Georgiev, Valentin et al.

Part of PLOS ONE, 2013

Net present value approaches for drug discovery

Svennebring, Andreas; Wikberg, Jarl E. S.

Part of SpringerPlus, 2013

Design and evaluation of substrate-based octapeptide and non substrate-based tetrapeptide inhibitors of dengue virus NS2B-NS3 proteases

Prusis, Peteris; Junaid, Muhammad; Petrovska, Ramona; Yahorava, Sviatlana et al.

Part of Biochemical and Biophysical Research Communications - BBRC, p. 767-772, 2013

Melanocortin 4 receptor in silico mutagenesis and docking studies

Shutava, Iryna; Lapinsh, Maris; Wikberg, Jarl

Part of European Biophysics Journal, 2013

Modulation of enzymatic activity of dengue virus nonstructural protein NS3 nucleoside triphosphatase/helicase by poly(U)

Junaid, M.; Angsuthanasombat, C.; Wikberg, Jarl E. S.; Ali, N. et al.

Part of Biochemistry (Moscow), p. 925-932, 2013

DOI for Modulation of enzymatic activity of dengue virus nonstructural protein NS3 nucleoside triphosphatase/helicase by poly(U)

A straightforward experimental approach to expression, purification, refolding, and enzymatic analysis of recombinant dengue virus NS2B(H)-NS3pro protease

Junaid, M.; Angsuthanasombat, C.; Wikberg, Jarl E. S.; Ali, N. et al.

Part of Biochemistry (Moscow), p. 920-924, 2013

DOI for A straightforward experimental approach to expression, purification, refolding, and enzymatic analysis of recombinant dengue virus NS2B(H)-NS3pro protease

Enzymatic Analysis of Recombinant Japanese Encephalitis Virus NS2B(H)-NS3pro Protease with Fluorogenic Model Peptide Substrates

Junaid, Muhammad; Chalayut, Chakard; Sehgelmeble Torrejon, Anna; Angsuthanasombat, Chanan et al.

Part of PLOS ONE, 2012

Dermal Melanocortin Receptor Rebound in Diffuse Systemic Sclerosis after Anti-TGFβ1 Antibody Therapy

Neumann Andersen, G.; Andersen, M.; Nagaeva, O.; Wikberg, Jarl E. S. et al.

Part of Scandinavian Journal of Immunology, p. 478-482, 2012

DOI for Dermal Melanocortin Receptor Rebound in Diffuse Systemic Sclerosis after Anti-TGFβ1 Antibody Therapy

A new protolimonoid from Capuronianthus mahafalensis

Fossen, Torgils; Rasoanaivo, Philippe; Manjovelo, Christian Sambany; Raharinjato, Fanja Hanitriniala et al.

Part of Fitoterapia (Milano), p. 901-906, 2012

DOI for A new protolimonoid from Capuronianthus mahafalensis

Linking the Resource Description Framework to cheminformatics and proteochemometrics

Willighagen, Egon; Alvarsson, Jonathan; Andersson, Annsofie; Eklund, Martin et al.

Part of Journal of Biomedical Semantics, p. 6, 2011

DOI for Linking the Resource Description Framework to cheminformatics and proteochemometrics

Brunn: an open source laboratory information system for microplates with a graphical plate layout design process

Alvarsson, Jonathan; Andersson, Claes; Spjuth, Ola; Larsson, Rolf et al.

Part of BMC Bioinformatics, 2011

Services for prediction of drug susceptibility for HIV proteases and reverse transcriptases at the HIV Drug Research Centre

Spjuth, Ola; Eklund, Martin; Lapins, Maris; Junaid, Muhammad et al.

Part of Bioinformatics, p. 1719-1720, 2011

DOI for Services for prediction of drug susceptibility for HIV proteases and reverse transcriptases at the HIV Drug Research Centre

Towards interoperable and reproducible QSAR analyses: Exchange of data sets

Spjuth, Ola; Willighagen, Egon; Guha, Rajarshi; Eklund, Martin et al.

Part of Journal of Cheminformatics, 2010

Kinome-wide interaction modelling using alignment-based and alignment-independent approaches for kinase description and linear and non-linear data analysis techniques

Lapins, Maris; Wikberg, Jarl E. S.

Part of BMC Bioinformatics, p. 339, 2010

DOI for Kinome-wide interaction modelling using alignment-based and alignment-independent approaches for kinase description and linear and non-linear data analysis techniques

An eScience-Bayes strategy for analyzing omics data

Eklund, Martin; Spjuth, Ola; Wikberg, Jarl

Part of BMC Bioinformatics, p. 282, 2010

DOI for An eScience-Bayes strategy for analyzing omics data

Proteochemometric Modeling of the Susceptibility of Mutated Variants of the HIV-1 Virus to Reverse Transcriptase Inhibitors

Junaid, Muhammad; Lapins, Maris; Eklund, Martin; Spjuth, Ola et al.

Part of PLoS ONE, 2010

DOI for Proteochemometric Modeling of the Susceptibility of Mutated Variants of the HIV-1 Virus to Reverse Transcriptase Inhibitors

Towards proteome-wide interaction models using the proteochemometrics approach

Strömbergsson, Helena; Lapins, Maris; Kleywegt, Gerard J.; Wikberg, Jarl E. S.

Part of Molecular Informatics, p. 499-508, 2010

DOI for Towards proteome-wide interaction models using the proteochemometrics approach

Bioclipse 2: A scriptable integration platform for the life sciences

Spjuth, Ola; Alvarsson, Jonathan; Berg, Arvid; Eklund, Martin et al.

Part of BMC Bioinformatics, p. 397, 2009

XMPP for cloud computing in bioinformatics supporting discovery and invocation of asynchronous web services

Wagener, Johannes; Spjuth, Ola; Willighagen, Egon; Wikberg, Jarl

Part of BMC Bioinformatics, p. 279, 2009

DOI for XMPP for cloud computing in bioinformatics supporting discovery and invocation of asynchronous web services

Proteochemometric Modeling of Drug Resistance over the Mutational Space for Multiple HIV Protease Variants and Multiple Protease Inhibitors

Lapins, Maris; Wikberg, Jarl E. S

Part of Journal of chemical information and modeling, p. 1202-1210, 2009

DOI for Proteochemometric Modeling of Drug Resistance over the Mutational Space for Multiple HIV Protease Variants and Multiple Protease Inhibitors

The C¹C²: a framework for simultaneous model selection and assessment

Eklund, Martin; Spjuth, Ola; Wikberg, Jarl E S

Part of BMC Bioinformatics, p. 360, 2008

DOI for The C¹C²: a framework for simultaneous model selection and assessment

Proteochemometric modeling of HIV protease susceptibility

Lapins, Maris; Eklund, Martin; Spjuth, Ola; Prusis, Peteris et al.

Part of BMC Bioinformatics, p. 181, 2008

DOI for Proteochemometric modeling of HIV protease susceptibility

Oligomerization of indole derivatives with incorporation of thiols

Mutulis, Felikss; Gogoll, Adolf; Mutule, Ilze; Yahorava, Sviatlana et al.

Part of Molecules, p. 1846-63, 2008

DOI for Oligomerization of indole derivatives with incorporation of thiols

Improving the affinity of antigens for mutated antibodies by use of statistical molecular design

Mandrika, Ilona; Prusis, Peteris; Bergström, Jakob; Yahorava, Sviatlana et al.

Part of Journal of Peptide Science, p. 786-96, 2008

DOI for Improving the affinity of antigens for mutated antibodies by use of statistical molecular design

Generalized proteochemometric model of multiple cytochrome P450 enzymes and their inhibitors

Kontijevskis, Aleksejs; Komorowski, Jan; Wikberg, Jarl

Part of Journal of chemical information and modeling, p. 1840-1850, 2008

DOI for Generalized proteochemometric model of multiple cytochrome P450 enzymes and their inhibitors

Proteochemometrics analysis of substrate interactions with dengue virus NS3 proteases

Prusis, Peteris; Lapins, Maris; Yahorava, Sviatlana; Petrovska, Ramona et al.

Part of Bioorganic & Medicinal Chemistry, p. 9369-9377, 2008

DOI for Proteochemometrics analysis of substrate interactions with dengue virus NS3 proteases

Bioclipse: an open source workbench for chemo- and bioinformatics

Spjuth, Ola; Helmus, Tobias; Willighagen, Egon L; Kuhn, Stefan et al.

Part of BMC Bioinformatics, p. 59, 2007

Proteochemometric modeling reveals the interaction site for Trp9 modified alpha-MSH peptides in melanocortin receptors

Lapinsh, Maris; Prusis, Peteris; Petrovska, Ramona; Uhlén, Staffan et al.

Part of Proteins, p. 653-660, 2007

DOI for Proteochemometric modeling reveals the interaction site for Trp9 modified alpha-MSH peptides in melanocortin receptors

QSAR of multiple mutated antibodies

Mandrika, Ilona; Prusis, Peteris; Yahorava, Sviatlana; Tars, Kaspars et al.

Part of Journal of Molecular Recognition, p. 97-102, 2007

DOI for QSAR of multiple mutated antibodies

A look inside HIV resistance through retroviral protease interaction maps

Kontijevskis, Aleksejs; Prusis, Peteris; Petrovska, Ramona; Yahorava, Sviatlana et al.

Part of PloS Computational Biology, p. 424-435, 2007

DOI for A look inside HIV resistance through retroviral protease interaction maps

Proteochemometric analysis of small cyclic peptides' interaction with wild-type and chimeric melanocortin receptors

Kontijevskis, Aleksejs; Petrovska, Ramona; Mutule, Ilze; Uhlén, Staffan et al.

Part of Proteins, p. 83-96, 2007

DOI for Proteochemometric analysis of small cyclic peptides' interaction with wild-type and chimeric melanocortin receptors

Computational proteomics analysis of HIV-1 protease interactome

Kontijevskis, Aleksejs; Wikberg, Jarl E. S.; Komorowski, Jan

Part of Proteins, p. 305-312, 2007

DOI for Computational proteomics analysis of HIV-1 protease interactome

Design and synthesis of a library of tertiary amides: evaluation as mimetics of the melanocortins' active core

Mutulis, Felikss; Kreicberga, Jana; Yahorava, Sviatlana; Mutule, Ilze et al.

Part of Bioorganic & Medicinal Chemistry, p. 5787-5810, 2007

DOI for Design and synthesis of a library of tertiary amides: evaluation as mimetics of the melanocortins' active core

Proteochemometric modelling of antibody-antigen interactions using SPOT synthesised peptide arrays

Mandrika, Ilona; Prusis, Peteris; Yahorava, Sviatlana; Shikhagaie, Medya et al.

Part of Protein Engineering Design & Selection, p. 301-307, 2007

DOI for Proteochemometric modelling of antibody-antigen interactions using SPOT synthesised peptide arrays

Rough set-based proteochemometrics modeling of G-protein-coupled receptor-ligand

Strömbergsson, Helena; Prusis, Peteris; Midelfart, Herman; Lapinsh, Maris et al.

Part of Proteins, p. 24-34, 2006

DOI for Rough set-based proteochemometrics modeling of G-protein-coupled receptor-ligand

Trigger factor binding to ribosomes with nascent peptide chains of varying lengths and sequences

Raine, Amanda; Lovmar, Martin; Wikberg, Jarl; Ehrenberg, Måns

Part of Journal of Biological Chemistry, p. 28033-28038, 2006

DOI for Trigger factor binding to ribosomes with nascent peptide chains of varying lengths and sequences

Anabolic androgenic steroid nandrolone decanoate reduces hypothalamic proopiomelanocortin mRNA levels

Lindblom, Jonas; Kindlundh, Anna; Nyberg, Fred; Bergström, Lena et al.

Part of Brain Research, p. 139-147, 2003

DOI for Anabolic androgenic steroid nandrolone decanoate reduces hypothalamic proopiomelanocortin mRNA levels

The anabolic-androgenic steroid nandrolone decanoate affects the density of dopamine receptors in the male rat brain

Kindlundh, Anna MS; Lindblom, Jonas; Bergström, Lena; Wikberg, Jarl ES et al.

Part of European Journal of Neuroscience, p. 291-296, 2001

DOI for The anabolic-androgenic steroid nandrolone decanoate affects the density of dopamine receptors in the male rat brain

A series of novel imidazoline I2-receptor selective Schiff bases of 1-(benzylidenamino)-3,3-dimethylguanidine.

Wikberg, J E; Hudson, A L

Part of Neurochem Int, p. 95-9, 1997

Comparison of the binding activities of some drugs on alpha 2A, alpha 2B and alpha 2C-adrenoceptors and non-adrenergic imidazoline sites in the guinea pig.

Uhlen, S; Muceniece, R; Rangel, N; Tiger, G et al.

Part of Pharmacol Toxicol, p. 353-64, 1995

Publications

Recent publications

All publications

Articles in journal

Articles, review/survey

Books

Chapters in book

Conference papers

Patents