Jarl Wikberg
Professor at Department of Pharmaceutical Biosciences; Research; Pharmaceutical Bioinformatics
- Telephone:
- +46 18 471 46 20
- E-mail:
- jarl.wikberg@uu.se
- Visiting address:
- Biomedicinskt centrum BMC, Husargatan 3
- Postal address:
- Box 591
751 24 UPPSALA
Publications
Recent publications
Towards Predicting the Cytochrome P450 Modulation: From QSAR to proteochemometric modeling.
Part of Current drug metabolism, p. 540-555, 2017
PepBio: predicting the bioactivity of host defense peptides
Part of RSC Advances, p. 35119-35134, 2017
Part of Scandinavian Journal of Immunology, p. 31-39, 2017
HemoPred: a web server for predicting the hemolytic activity of peptides
Part of Future Medicinal Chemistry, p. 275-291, 2017
Exploring the epigenetic drug discovery landscape
Part of Expert Opinion on Drug Discovery, p. 345-362, 2017
All publications
Articles in journal
Towards Predicting the Cytochrome P450 Modulation: From QSAR to proteochemometric modeling.
Part of Current drug metabolism, p. 540-555, 2017
PepBio: predicting the bioactivity of host defense peptides
Part of RSC Advances, p. 35119-35134, 2017
Part of Scandinavian Journal of Immunology, p. 31-39, 2017
HemoPred: a web server for predicting the hemolytic activity of peptides
Part of Future Medicinal Chemistry, p. 275-291, 2017
CryoProtect: A Web Server for Classifying Antifreeze Proteins from Nonantifreeze Proteins
Part of Journal of Chemistry, 2017
- DOI for CryoProtect: A Web Server for Classifying Antifreeze Proteins from Nonantifreeze Proteins
- Download full text (pdf) of CryoProtect: A Web Server for Classifying Antifreeze Proteins from Nonantifreeze Proteins
Part of Annals of the Rheumatic Diseases, p. 903-904, 2016
Resistin Gene Transcription Is Regulated in Adaptive and Innate Immunity in Rheumatoid Arthritis
Part of Annals of the Rheumatic Diseases, p. 904-904, 2016
Origin of aromatase inhibitory activity via proteochemometric modeling
Part of PeerJ, 2016
- DOI for Origin of aromatase inhibitory activity via proteochemometric modeling
- Download full text (pdf) of Origin of aromatase inhibitory activity via proteochemometric modeling
Probing the origins of human acetylcholinesterase inhibition via QSAR modeling and molecular docking
Part of PeerJ, 2016
- DOI for Probing the origins of human acetylcholinesterase inhibition via QSAR modeling and molecular docking
- Download full text (pdf) of Probing the origins of human acetylcholinesterase inhibition via QSAR modeling and molecular docking
Large-scale ligand-based predictive modelling using support vector machines
Part of Journal of Cheminformatics, 2016
- DOI for Large-scale ligand-based predictive modelling using support vector machines
- Download full text (pdf) of Large-scale ligand-based predictive modelling using support vector machines
osFP: a web server for predicting the oligomeric states of fluorescent proteins
Part of Journal of Cheminformatics, 2016
- DOI for osFP: a web server for predicting the oligomeric states of fluorescent proteins
- Download full text (pdf) of osFP: a web server for predicting the oligomeric states of fluorescent proteins
Part of Scandinavian Journal of Immunology, p. 229-236, 2016
New Polyfunctional Phragmalin Limonoids from Neobeguea mahafalensis
Part of Planta Medica, p. 1087-1095, 2016
Part of Chemometrics and Intelligent Laboratory Systems, p. 219-227, 2016
Proteochemometric model for predicting the inhibition of penicillin-binding proteins
Part of Journal of Computer-Aided Molecular Design, p. 127-141, 2015
Part of Scandinavian Journal of Rheumatology, p. 25-26, 2014
Part of Journal of Computational Chemistry, p. 1951-1966, 2014
Part of Planta Medica, p. 306-314, 2014
Ligand-Based Target Prediction with Signature Fingerprints
Part of Journal of Chemical Information and Modeling, p. 2647-2653, 2014
Part of Journal of Chemical Information and Modeling, p. 3211-3217, 2014
Semisynthesis of Libiguin A and Its Analogues by Trans-Lactonization of Phragmalin
Part of Journal of Organic Chemistry, p. 4148-4153, 2014
Bioclipse-R: Integrating management and visualization of life science data with statistical analysis
Part of Bioinformatics, p. 286-289, 2013
A Unified Proteochemometric Model for Prediction of Inhibition of Cytochrome P450 Isoforms
Part of PLOS ONE, 2013
- DOI for A Unified Proteochemometric Model for Prediction of Inhibition of Cytochrome P450 Isoforms
- Download full text (pdf) of A Unified Proteochemometric Model for Prediction of Inhibition of Cytochrome P450 Isoforms
Net present value approaches for drug discovery
Part of SpringerPlus, 2013
- DOI for Net present value approaches for drug discovery
- Download full text (pdf) of Net present value approaches for drug discovery
Part of Biochemical and Biophysical Research Communications - BBRC, p. 767-772, 2013
- DOI for Design and evaluation of substrate-based octapeptide and non substrate-based tetrapeptide inhibitors of dengue virus NS2B-NS3 proteases
- Download full text (pdf) of Design and evaluation of substrate-based octapeptide and non substrate-based tetrapeptide inhibitors of dengue virus NS2B-NS3 proteases
Melanocortin 4 receptor in silico mutagenesis and docking studies
Part of European Biophysics Journal, 2013
Part of Biochemistry (Moscow), p. 925-932, 2013
Part of Biochemistry (Moscow), p. 920-924, 2013
Part of PLOS ONE, 2012
- DOI for Enzymatic Analysis of Recombinant Japanese Encephalitis Virus NS2B(H)-NS3pro Protease with Fluorogenic Model Peptide Substrates
- Download full text (pdf) of Enzymatic Analysis of Recombinant Japanese Encephalitis Virus NS2B(H)-NS3pro Protease with Fluorogenic Model Peptide Substrates
Dermal Melanocortin Receptor Rebound in Diffuse Systemic Sclerosis after Anti-TGFβ1 Antibody Therapy
Part of Scandinavian Journal of Immunology, p. 478-482, 2012
A new protolimonoid from Capuronianthus mahafalensis
Part of Fitoterapia (Milano), p. 901-906, 2012
Linking the Resource Description Framework to cheminformatics and proteochemometrics
Part of Journal of Biomedical Semantics, p. 6, 2011
Part of BMC Bioinformatics, 2011
- DOI for Brunn: an open source laboratory information system for microplates with a graphical plate layout design process
- Download full text (pdf) of Brunn: an open source laboratory information system for microplates with a graphical plate layout design process
Part of Bioinformatics, p. 1719-1720, 2011
Towards interoperable and reproducible QSAR analyses: Exchange of data sets
Part of Journal of Cheminformatics, 2010
- DOI for Towards interoperable and reproducible QSAR analyses: Exchange of data sets
- Download full text (pdf) of Towards interoperable and reproducible QSAR analyses: Exchange of data sets
Part of BMC Bioinformatics, p. 339, 2010
An eScience-Bayes strategy for analyzing omics data
Part of BMC Bioinformatics, p. 282, 2010
Part of PLoS ONE, 2010
Towards proteome-wide interaction models using the proteochemometrics approach
Part of Molecular Informatics, p. 499-508, 2010
Bioclipse 2: A scriptable integration platform for the life sciences
Part of BMC Bioinformatics, p. 397, 2009
- DOI for Bioclipse 2: A scriptable integration platform for the life sciences
- Download full text (pdf) of Bioclipse 2: A scriptable integration platform for the life sciences
Part of BMC Bioinformatics, p. 279, 2009
Part of Journal of chemical information and modeling, p. 1202-1210, 2009
The C1C2: a framework for simultaneous model selection and assessment
Part of BMC Bioinformatics, p. 360, 2008
Proteochemometric modeling of HIV protease susceptibility
Part of BMC Bioinformatics, p. 181, 2008
Oligomerization of indole derivatives with incorporation of thiols
Part of Molecules, p. 1846-63, 2008
Improving the affinity of antigens for mutated antibodies by use of statistical molecular design
Part of Journal of Peptide Science, p. 786-96, 2008
Generalized proteochemometric model of multiple cytochrome P450 enzymes and their inhibitors
Part of Journal of chemical information and modeling, p. 1840-1850, 2008
Proteochemometrics analysis of substrate interactions with dengue virus NS3 proteases
Part of Bioorganic & Medicinal Chemistry, p. 9369-9377, 2008
Bioclipse: an open source workbench for chemo- and bioinformatics
Part of BMC Bioinformatics, p. 59, 2007
- DOI for Bioclipse: an open source workbench for chemo- and bioinformatics
- Download full text (pdf) of Bioclipse: an open source workbench for chemo- and bioinformatics
Part of Proteins, p. 653-660, 2007
QSAR of multiple mutated antibodies
Part of Journal of Molecular Recognition, p. 97-102, 2007
A look inside HIV resistance through retroviral protease interaction maps
Part of PloS Computational Biology, p. 424-435, 2007
Part of Proteins, p. 83-96, 2007
Computational proteomics analysis of HIV-1 protease interactome
Part of Proteins, p. 305-312, 2007
Part of Bioorganic & Medicinal Chemistry, p. 5787-5810, 2007
Proteochemometric modelling of antibody-antigen interactions using SPOT synthesised peptide arrays
Part of Protein Engineering Design & Selection, p. 301-307, 2007
Rough set-based proteochemometrics modeling of G-protein-coupled receptor-ligand
Part of Proteins, p. 24-34, 2006
Trigger factor binding to ribosomes with nascent peptide chains of varying lengths and sequences
Part of Journal of Biological Chemistry, p. 28033-28038, 2006
Part of Brain Research, p. 139-147, 2003
Part of European Journal of Neuroscience, p. 291-296, 2001
Part of Neurochem Int, p. 95-9, 1997
Part of Pharmacol Toxicol, p. 353-64, 1995
Articles, review/survey
Exploring the epigenetic drug discovery landscape
Part of Expert Opinion on Drug Discovery, p. 345-362, 2017
Roles of d-Amino Acids on the Bioactivity of Host Defense Peptides
Part of International Journal of Molecular Sciences, 2016
- DOI for Roles of d-Amino Acids on the Bioactivity of Host Defense Peptides
- Download full text (pdf) of Roles of d-Amino Acids on the Bioactivity of Host Defense Peptides
Targeting melanocortin receptors: an approach to treat weight disorders and sexual dysfunction
Part of Nature reviews. Drug discovery, p. 307-323, 2008
Books
Introduction to Pharmaceutical Bioinformatics
Oakleaf Academic, 2010
Chapters in book
Chemoinformatics taking Biology into Account: Proteochemometrics
Part of Computational Approaches in Cheminformatics and Bioinformatics, John Wiley & Sons, 2012
Conference papers
Linking Open Drug Data to Cheminformatics and Proteochemometrics
Part of SWAT4LS-2009 - Semantic Web Applications and Tools for Life Sciences, 2010