Publications

Enhancing isomer specificity in mass spectrometry by combining silver ion adduction and ion mobility

Sharma, Varun V.; De Chavez, Danjo; Slade, Susan E.; Lanekoff, Ingela

Part of Talanta Open, 2024

• DOI for Enhancing isomer specificity in mass spectrometry by combining silver ion adduction and ion mobility
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The Influence of Disulfide, Thioacetal and Lanthionine-Bridges on the Conformation of a Macrocyclic Peptide

Darling, William T. P.; Wieske, Hermina H. E.; Cook, Declan T.; Aliev, Abil E. et al.

Part of Chemistry - A European Journal, 2024

• DOI for The Influence of Disulfide, Thioacetal and Lanthionine-Bridges on the Conformation of a Macrocyclic Peptide
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Optimising in-cell NMR acquisition for nucleic acids

Annecke, Henry T. P.; Eidelpes, Reiner; Feyrer, Hannes; Ilgen, Julian et al.

Part of Journal of Biomolecular NMR, 2024

• DOI for Optimising in-cell NMR acquisition for nucleic acids

Elucidating microRNA-34a organisation within human Argonaute-2 by dynamic nuclear polarisation-enhanced magic angle spinning NMR

Dasgupta, Rubin; Becker, Walter; Petzold, Katja

Part of Nucleic Acids Research, p. 11995-12004, 2024

• DOI for Elucidating microRNA-34a organisation within human Argonaute-2 by dynamic nuclear polarisation-enhanced magic angle spinning NMR

Antiviral Rotenoids and Isoflavones Isolated from Millettia oblata ssp. teitensis

Kiganda, Ivan; Bogaerts, Jonathan; Wieske, Lianne H.E.; Deyou, Tsegaye et al.

Part of Journal of Natural Products, p. 1003-1012, 2024

• DOI for Antiviral Rotenoids and Isoflavones Isolated from Millettia oblata ssp. teitensis
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Elucidating the Binding Mode of Sulfur- and Selenium-Based Cationic Chalcogen-Bond Donors

Akbaba, Sercan; Steinke, Tim; Vogel, Lukas; Engelage, Elric et al.

Part of Chemistry - A European Journal, 2024

• DOI for Elucidating the Binding Mode of Sulfur- and Selenium-Based Cationic Chalcogen-Bond Donors
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Antimicrobial Dihydroflavonols and Isoflavans Isolated from the Root Bark of Dalbergia gloveri

Kiganda, Ivan; Wieske, Lianne H. E.; Nchiozem-Ngnitedem, Vaderament-Alexe; Chalo, Duncan et al.

Part of Journal of Natural Products, p. 2263-2271, 2024

• DOI for Antimicrobial Dihydroflavonols and Isoflavans Isolated from the Root Bark of Dalbergia gloveri
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Bioactive abietenolide diterpenes from Suregada procera

Matundura, Jackson Obegi; Mollel, Jackson T.; Miah, Masum; Said, Joanna et al.

Part of Fitoterapia, 2024

• DOI for Bioactive abietenolide diterpenes from Suregada procera
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Elucidating microRNA-34a organisation within human Argonaute-2 by dynamic nuclear polarisation-enhanced magic angle spinning NMR

Dasgupta, Rubin; Becker, Walter; Petzold, Katja

Part of Nucleic Acids Research, 2024

• DOI for Elucidating microRNA-34a organisation within human Argonaute-2 by dynamic nuclear polarisation-enhanced magic angle spinning NMR

Optimising in-cell NMR acquisition for nucleic acids

Annecke, Henry T. P.; Eidelpes, Reiner; Feyrer, Hannes; Ilgen, Julian et al.

Part of Journal of Biomolecular NMR, 2024

• DOI for Optimising in-cell NMR acquisition for nucleic acids

Cryo-EM structures of a bathy phytochrome histidine kinase reveal a unique light-dependent activation mechanism

Bódizs, Szabolcs; Mészáros, Petra; Grunewald, Lukas; Takala, Heikki et al.

Part of Structure, p. 1952-1962000, 2024

• DOI for Cryo-EM structures of a bathy phytochrome histidine kinase reveal a unique light-dependent activation mechanism
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Molecular chameleons in drug discovery

Poongavanam, Vasanthanathan; Wieske, Lianne H. E.; Peintner, Stefan; Erdélyi, Máté et al.

Part of Nature Reviews Chemistry, p. 45-60, 2024

• DOI for Molecular chameleons in drug discovery

Interleukin-13 Treatment of Living Lung Tissue Model Alters the Metabolome and Proteome: A Nano-DESI MS Metabolomics and Shotgun Proteomics Study

Tóth, Gábor; Golubova, Anastasia; Falk, Alexander; Bergström Lind, Sara et al.

Part of International Journal of Molecular Sciences, 2024

• DOI for Interleukin-13 Treatment of Living Lung Tissue Model Alters the Metabolome and Proteome: A Nano-DESI MS Metabolomics and Shotgun Proteomics Study
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Is Simultaneous Binding to DNA and Gyrase Important for the Antibacterial Activity of Cystobactamids?

Solga, Danny; Wieske, Hermina; Wilcox, Scott; Zeilinger, Carsten et al.

Part of Chemistry - A European Journal, 2024

• DOI for Is Simultaneous Binding to DNA and Gyrase Important for the Antibacterial Activity of Cystobactamids?
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Directed ultrafast conformational changes accompany electron transfer in a photolyase as resolved by serial crystallography

Cellini, Andrea; Shankar, Madan Kumar; Nimmrich, Amke; Hunt, Leigh Anna et al.

Part of Nature Chemistry, p. 624-632, 2024

• DOI for Directed ultrafast conformational changes accompany electron transfer in a photolyase as resolved by serial crystallography
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Exploring the chemical space of orally bioavailable PROTACs

Apprato, Giulia; Poongavanam, Vasanthanathan; Jimenez, Diego Garcia; Atilaw, Yoseph et al.

Part of Drug Discovery Today, 2024

• DOI for Exploring the chemical space of orally bioavailable PROTACs
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Microsecond time-resolved X-ray scattering by utilizing MHz repetition rate at second-generation XFELs

Konold, Patrick; Monrroy, Leonardo; Bellisario, Alfredo; de Matos Filipe, Diogo et al.

Part of Nature Methods, p. 1608-1611, 2024

• DOI for Microsecond time-resolved X-ray scattering by utilizing MHz repetition rate at second-generation XFELs
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Time-resolved serial crystallography to reveal protein structural changes

Mészáros, Petra; Westenhoff, Sebastian

Part of Trends in Biochemical Sciences (TIBS), p. 183-184, 2024

• DOI for Time-resolved serial crystallography to reveal protein structural changes
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Fluorinated captopril analogues inhibit metallo-ll-lactamases and facilitate structure determination of NDM-1 binding pose

Kondratieva, Alexandra; Palica, Katarzyna; Frohlich, Christopher; Hovd, Rebekka Rolfsnes et al.

Part of European Journal of Medicinal Chemistry, 2024

• DOI for Fluorinated captopril analogues inhibit metallo-ll-lactamases and facilitate structure determination of NDM-1 binding pose
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Halogen Bonds of Halogen(I) Ions: Where Are We and Where to Go?

Wieske, Lianne H. E.; Erdélyi, Máté

Part of Journal of the American Chemical Society, p. 3-18, 2023

• DOI for Halogen Bonds of Halogen(I) Ions: Where Are We and Where to Go?
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Revealing Structure and Localization of Steroid Regioisomers through Predictive Fragmentation Patterns in Mass Spectrometry Imaging

Sharma, Varun; Lanekoff, Ingela

Part of Analytical Chemistry, p. 17843-17850, 2023

• DOI for Revealing Structure and Localization of Steroid Regioisomers through Predictive Fragmentation Patterns in Mass Spectrometry Imaging
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α-Aminophosphonate inhibitors of metallo-β-lactamases NDM-1 and VIM-2

Palica, Katarzyna; Deufel, Fritz; Skagseth, Susann; Di Santo Metzler, Gabriela Paula et al.

Part of RSC Medicinal Chemistry, p. 2277-2300, 2023

• DOI for α-Aminophosphonate inhibitors of metallo-β-lactamases NDM-1 and VIM-2
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Global and Spatial Metabolomics of Individual Cells Using a Tapered Pneumatically Assisted nano-DESI Probe

Marques-Santos, Cátia M.; Friedrich, Felix; Liu, Liangwen; Castoldi, Francesca et al.

Part of Journal of the American Society for Mass Spectrometry, p. 2518-2524, 2023

• DOI for Global and Spatial Metabolomics of Individual Cells Using a Tapered Pneumatically Assisted nano-DESI Probe
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Signaling Mechanism of Phytochromes in Solution

Isaksson, Linnéa; Gustavsson, Emil; Persson, Cecilia; Brath, Ulrika et al.

Part of Structure, p. 151-160000, 2021

• DOI for Signaling Mechanism of Phytochromes in Solution
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Modulation of Structural Heterogeneity Controls Phytochrome Photoswitching

Gustavsson, Emil; Isaksson, Linnéa; Persson, Cecilia; Mayzel, Maxim et al.

Part of Biophysical Journal, p. 415-421, 2020

• DOI for Modulation of Structural Heterogeneity Controls Phytochrome Photoswitching

3D-printed sheet jet for stable megahertz liquid sample delivery at X-ray free-electron lasers

Konold, Patrick E.; You, Tong; Bielecki, Johan; Valerio, Joana et al.

Part of IUCrJ, p. 662-670, 2023

• DOI for 3D-printed sheet jet for stable megahertz liquid sample delivery at X-ray free-electron lasers
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NanoBiT‐ and NanoBiT/BRET‐based assays allow the analysis of binding kinetics of Wnt‐3a to endogenous Frizzled 7 in a colorectal cancer model

Grätz, Lukas; Sajkowska‐Kozielewicz, Joanna J.; Wesslowski, Janine; Kinsolving, Julia et al.

Part of British Journal of Pharmacology, 2023

• DOI for NanoBiT‐ and NanoBiT/BRET‐based assays allow the analysis of binding kinetics of Wnt‐3a to endogenous Frizzled 7 in a colorectal cancer model

Efficient 3′-pairing renders microRNA targeting less sensitive to mRNA seed accessibility

Kosek, David M; Banijamali, Elnaz; Becker, Walter; Petzold, Katja et al.

Part of Nucleic Acids Research, p. 11162-11177, 2023

• DOI for Efficient 3′-pairing renders microRNA targeting less sensitive to mRNA seed accessibility
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RNA:RNA interaction in ternary complexes resolved by chemical probing

Banijamali, Elnaz; Baronti, Lorenzo; Becker, Walter; Sajkowska-Kozielewicz, Joanna J. et al.

Part of RNA, p. 317-329, 2022

• DOI for RNA:RNA interaction in ternary complexes resolved by chemical probing
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ICARUS: in-situ studies of the solar corona beyond Parker Solar Probe and Solar Orbiter

Krasnoselskikh, Vladimir; Tsurutani, Bruce T.; Dudok de Wit, Thierry; Walker, Simon et al.

Part of Experimental astronomy, p. 277-315, 2022

• DOI for ICARUS: in-situ studies of the solar corona beyond Parker Solar Probe and Solar Orbiter
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Mass Spectrometry of RNA-Binding Proteins during Liquid-Liquid Phase Separation Reveals Distinct Assembly Mechanisms and Droplet Architectures

Sahin, Cagla; Motso, Aikaterini; Gu, Xinyu; Feyrer, Hannes et al.

Part of Journal of the American Chemical Society, p. 10659-10668, 2023

• DOI for Mass Spectrometry of RNA-Binding Proteins during Liquid-Liquid Phase Separation Reveals Distinct Assembly Mechanisms and Droplet Architectures
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Solvent-Dependent Structural Dynamics in the Ultrafast Photodissociation Reaction of Triiodide Observed with Time-Resolved X-ray Solution Scattering

Nimmrich, Amke; Panman, Matthijs R.; Berntsson, Oskar; Biasin, Elisa et al.

Part of Journal of the American Chemical Society, p. 15754-15765, 2023

• DOI for Solvent-Dependent Structural Dynamics in the Ultrafast Photodissociation Reaction of Triiodide Observed with Time-Resolved X-ray Solution Scattering
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Do non-coordinating polymers function as host materials for solid polymer electrolytes?: The case of PVdF-HFP

Hernández, Guiomar; Lee, Tian Khoon; Erdélyi, Máté; Brandell, Daniel et al.

Part of Journal of Materials Chemistry A, p. 15329-15335, 2023

• DOI for Do non-coordinating polymers function as host materials for solid polymer electrolytes?: The case of PVdF-HFP
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Identification and Imaging of Prostaglandin Isomers Utilizing MS³ Product Ions and Silver Cationization

Mavroudakis, Leonidas; Lanekoff, Ingela

Part of Journal of the American Society for Mass Spectrometry, p. 2341-2349, 2023

• DOI for Identification and Imaging of Prostaglandin Isomers Utilizing MS³ Product Ions and Silver Cationization
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Screening autism-associated environmental factors in differentiating human neural progenitors with fractional factorial design-based transcriptomics

Arora, Abishek; Becker, Martin; Marques-Santos, Cátia M.; Oksanen, Marika et al.

Part of Scientific Reports, 2023

• DOI for Screening autism-associated environmental factors in differentiating human neural progenitors with fractional factorial design-based transcriptomics
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Ion-to-Image, i2i, a Mass Spectrometry Imaging Data Analysis Platform for Continuous Ionization Techniques

Lillja, Johan; Duncan, Kyle D.; Lanekoff, Ingela

Part of Analytical Chemistry, p. 11589-11595, 2023

• DOI for Ion-to-Image, i2i, a Mass Spectrometry Imaging Data Analysis Platform for Continuous Ionization Techniques
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Benzo[b]naphtho[2,1-d]furans and 2-Phenylnaphthalenes from Streblus usambarensis

Chepkirui, Carolyne; Ali Adem, Fozia; Rudenko, Anastasia; Gütlin, Yukino et al.

Part of Journal of Natural Products, p. 1010-1018, 2023

• DOI for Benzo[b]naphtho[2,1-d]furans and 2-Phenylnaphthalenes from Streblus usambarensis
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Ensemble determination by NMR data deconvolution

Wieske, Lianne H. E.; Peintner, Stefan; Erdélyi, Máté

Part of Nature Reviews Chemistry, p. 511-524, 2023

• DOI for Ensemble determination by NMR data deconvolution

Macrocyclic Pyrrolizidine Alkaloids and Silphiperfolanol Angelate Esters from Solanecio mannii

Umereweneza, Daniel; Atilaw, Yoseph; Peintner, Stefan; Rudenko, Anastasia et al.

Part of European Journal of Organic Chemistry, 2023

• DOI for Macrocyclic Pyrrolizidine Alkaloids and Silphiperfolanol Angelate Esters from Solanecio mannii
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Structural mechanism of signal transduction in a phytochrome histidine kinase

Wahlgren, Weixiao Yuan; Claesson, Elin; Tuure, Iida; Trillo-Muyo, Sergio et al.

Part of Nature Communications, 2022

• DOI for Structural mechanism of signal transduction in a phytochrome histidine kinase
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1-Phospha-Butadienes and 1H-Phospholes via Alkynylation of Acetylenic Phosphaalkenes

Shameem, Muhammad Anwar; Gupta, Arvind Kumar; Erdélyi, Máté; Orthaber, Andreas

Part of ChemPlusChem, 2023

• DOI for 1-Phospha-Butadienes and 1H-Phospholes via Alkynylation of Acetylenic Phosphaalkenes
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Going Viral: An Investigation into the Chameleonic Behaviour of Antiviral Compounds

Wieske, Lianne H. E.; Atilaw, Yoseph; Poongavanam, Vasanthanathan; Erdélyi, Máté et al.

Part of Chemistry - A European Journal, 2023

• DOI for Going Viral: An Investigation into the Chameleonic Behaviour of Antiviral Compounds
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Ground-state heterogeneity and vibrational energy redistribution in bacterial phytochrome observed with femtosecond 2D IR spectroscopy

Chenchiliyan, Manoop; Kuebel, Joachim; Ooi, Saik Ann; Salvadori, Giacomo et al.

Part of Journal of Chemical Physics, 2023

• DOI for Ground-state heterogeneity and vibrational energy redistribution in bacterial phytochrome observed with femtosecond 2D IR spectroscopy
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Crotofolane Diterpenoids and Other Constituents Isolated from Croton kilwae

Mahambo, Emanuel T.; Uwamariya, Colores; Miah, Masum; Clementino, Leandro da Costa et al.

Part of Journal of Natural Products, p. 380-389, 2023

• DOI for Crotofolane Diterpenoids and Other Constituents Isolated from Croton kilwae
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Ischemic Stroke Causes Disruptions in the Carnitine Shuttle System

Mavroudakis, Leonidas; Lanekoff, Ingela

Part of Metabolites, 2023

• DOI for Ischemic Stroke Causes Disruptions in the Carnitine Shuttle System
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Single-cell metabolomics: where are we and where are we going?

Lanekoff, Ingela; Sharma, Varun V.; Marques, Cátia

Part of Current Opinion in Biotechnology, 2022

• DOI for Single-cell metabolomics: where are we and where are we going?
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Surface sampling capillary electrophoresis–mass spectrometry for a direct chemical characterization of tissue and blood samples

Golubova, Anastasia; Lanekoff, Ingela

Part of Electrophoresis, p. 387-394, 2023

• DOI for Surface sampling capillary electrophoresis–mass spectrometry for a direct chemical characterization of tissue and blood samples
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Quantitative determination of sn-positional phospholipid isomers in MSn using silver cationization

Lillja, Johan; Lanekoff, Ingela

Part of Analytical and Bioanalytical Chemistry, p. 7473-7482, 2022

• DOI for Quantitative determination of sn-positional phospholipid isomers in MSn using silver cationization
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Simultaneous determination of four organic acids in beverages by capillary electrophoresis coupled with ultraviolet detector

Bui Quang, Dong; Ivanova, Arina; Qiu, Siyuan; Lanekoff, Ingela

Part of Vietnam Journal of Food Control, p. 89-103, 2022

• DOI for Simultaneous determination of four organic acids in beverages by capillary electrophoresis coupled with ultraviolet detector

A Direct Infusion Probe for Rapid Metabolomics of Low-Volume Samples

Marques, Cátia; Liu, Liangwen; Duncan, Kyle D.; Lanekoff, Ingela

Part of Analytical Chemistry, p. 12875-12883, 2022

• DOI for A Direct Infusion Probe for Rapid Metabolomics of Low-Volume Samples
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