Ahmed Sayadi

Negative frequency dependent selection contributes to the maintenance of a global polymorphism in mitochondrial DNA

Novicic, Zorana Kurbalija; Sayadi, Ahmed; Jelic, Mihailo; Arnqvist, Göran

Part of BMC Evolutionary Biology, 2020

• DOI for Negative frequency dependent selection contributes to the maintenance of a global polymorphism in mitochondrial DNA
• Download full text (pdf) of Negative frequency dependent selection contributes to the maintenance of a global polymorphism in mitochondrial DNA

Identification of novel ejaculate proteins in a seed beetle and division of labour across male accessory reproductive glands

Bayram, Helen L.; Sayadi, Ahmed; Immonen, Elina; Arnqvist, Göran

Part of Insect biochemistry and molecular biology, p. 50-57, 2019

• DOI for Identification of novel ejaculate proteins in a seed beetle and division of labour across male accessory reproductive glands

The genomic footprint of sexual conflict

Sayadi, Ahmed; Martínez Barrio, Álvaro; Immonen, Elina; Dainat, Jacques et al.

Part of Nature Ecology & Evolution, p. 1725-1730, 2019

• DOI for The genomic footprint of sexual conflict
• Download full text (pdf) of The genomic footprint of sexual conflict

Novel seminal fluid proteins in the seed beetle Callosobruchus maculatus identified by a proteomic and transcriptomic approach

Bayram, Helen L.; Sayadi, Ahmed; Goenaga, Julieta; Immonen, Elina et al.

Part of Insect molecular biology (Print), p. 58-73, 2017

• DOI for Novel seminal fluid proteins in the seed beetle Callosobruchus maculatus identified by a proteomic and transcriptomic approach

Divergent evolution of life span associated with mitochondrial DNA evolution

Stojkovic, Biljana; Sayadi, Ahmed; Dordevic, Mirko; Jovic, Jelena et al.

Part of Evolution, p. 160-166, 2017

• DOI for Divergent evolution of life span associated with mitochondrial DNA evolution

The Evolution of Dark Matter in the Mitogenome of Seed Beetles

Sayadi, Ahmed; Immonen, Elina; Tellgren-Roth, Christian; Arnqvist, Göran

Part of Genome Biology and Evolution, p. 2697-2706, 2017

• DOI for The Evolution of Dark Matter in the Mitogenome of Seed Beetles
• Download full text (pdf) of The Evolution of Dark Matter in the Mitogenome of Seed Beetles

Mating Changes Sexually Dimorphic Gene Expression in the Seed Beetle Callosobruchus maculatus

Immonen, Elina; Sayadi, Ahmed; Bayram, Helen; Arnqvist, Göran

Part of Genome Biology and Evolution, p. 677-699, 2017

• DOI for Mating Changes Sexually Dimorphic Gene Expression in the Seed Beetle Callosobruchus maculatus
• Download full text (pdf) of Mating Changes Sexually Dimorphic Gene Expression in the Seed Beetle Callosobruchus maculatus

Negative frequency dependent selection on sympatric mtDNA haplotypes in Drosophila subobscura

Arnqvist, Göran; Novicic, Zorana Kurbalija; Castro, Jose A.; Sayadi, Ahmed

Part of Hereditas, 2016

• DOI for Negative frequency dependent selection on sympatric mtDNA haplotypes in Drosophila subobscura
• Download full text (pdf) of Negative frequency dependent selection on sympatric mtDNA haplotypes in Drosophila subobscura

The De Novo Transcriptome and Its Functional Annotation in the Seed Beetle Callosobruchus maculatus

Sayadi, Ahmed; Immonen, Elina; Bayram, Helen; Arnqvist, Göran

Part of PLOS ONE, 2016

• DOI for The De Novo Transcriptome and Its Functional Annotation in the Seed Beetle Callosobruchus maculatus
• Download full text (pdf) of The De Novo Transcriptome and Its Functional Annotation in the Seed Beetle Callosobruchus maculatus

Functional features of EVI1 and EVI1Δ324 isoforms of MECOM gene in genome-wide transcription regulation and oncogenicity.

Sayadi, Ahmed; Jeyakani, J; Seet, S H; Wei, C-L et al.

Part of Oncogene, p. 2311-2321, 2016

• DOI for Functional features of EVI1 and EVI1Δ324 isoforms of MECOM gene in genome-wide transcription regulation and oncogenicity.

Genome size correlates with reproductive fitness in seed beetles

Arnqvist, Göran; Sayadi, Ahmed; Immonen, Elina; Hotzy, Cosima et al.

Part of Proceedings of the Royal Society of London. Biological Sciences, 2015

• DOI for Genome size correlates with reproductive fitness in seed beetles

Mice carrying a hypomorphic Evi1 allele are embryonic viable but exhibit severe congenital heart defects

Bard-Chapeau, Emilie A; Szumska, Dorota; Jacob, Bindya; Chua, Belinda Q L et al.

Part of PLOS ONE, 2014

• DOI for Mice carrying a hypomorphic Evi1 allele are embryonic viable but exhibit severe congenital heart defects
• Download full text (pdf) of Mice carrying a hypomorphic Evi1 allele are embryonic viable but exhibit severe congenital heart defects

Transposon mutagenesis identifies genes driving hepatocellular carcinoma in a chronic hepatitis B mouse model.

Bard-Chapeau, Emilie A; Nguyen, Anh-Tuan; Rust, Alistair G; Sayadi, Ahmed et al.

Part of Nature Genetics, 2014

• DOI for Transposon mutagenesis identifies genes driving hepatocellular carcinoma in a chronic hepatitis B mouse model.

Zip14 expression induced by lipopolysaccharides in macrophages attenuates inflammatory response

Sayadi, Ahmed; Nguyen, Anh-Tuan; Bard, Frederic A; Bard-Chapeau, Emilie A

Part of Inflammation Research, 2013

• DOI for Zip14 expression induced by lipopolysaccharides in macrophages attenuates inflammatory response

Genetic variants and mutations of PPM1D control the response to DNA damage

Dudgeon, Crissy; Shreeram, Sathyavageeswaran; Tanoue, Kan; Mazur, Sharlyn J et al.

Part of Cell Cycle, 2013

• DOI for Genetic variants and mutations of PPM1D control the response to DNA damage

Interaction network of the 14-3-3 protein in the ancient protozoan parasite Giardia duodenalis.

Lalle, Marco; Camerini, Serena; Cecchetti, Serena; Sayadi, Ahmed et al.

Part of Journal of Proteome Research, p. 2666-2683, 2012

• DOI for Interaction network of the 14-3-3 protein in the ancient protozoan parasite Giardia duodenalis.

Exploiting Publicly Available Biological and Biochemical Information for the Discovery of Novel Short Linear Motifs

Sayadi, Ahmed; Briganti, Leonardo; Tramontano, Anna; Via, Allegra

Part of PLOS ONE, 2011

• DOI for Exploiting Publicly Available Biological and Biochemical Information for the Discovery of Novel Short Linear Motifs
• Download full text (pdf) of Exploiting Publicly Available Biological and Biochemical Information for the Discovery of Novel Short Linear Motifs

ELM: the status of the 2010 eukaryotic linear motif resource.

Gould, Cathryn M; Diella, Francesca; Via, Allegra; Puntervoll, Pål et al.

Part of Nucleic Acids Research, 2010

• DOI for ELM: the status of the 2010 eukaryotic linear motif resource.
• Download full text (pdf) of ELM: the status of the 2010 eukaryotic linear motif resource.

A survey of ficolin-3 activity in Systemic Lupus Erythematosus reveals a link to hematological disease manifestations and autoantibody profile

Lindelöf, Linnea; Rantapää-Dahlqvist, Solbritt; Lundtoft, Christian; Sandling, Johanna K. et al.

Part of Journal of Autoimmunity, 2024

• DOI for A survey of ficolin-3 activity in Systemic Lupus Erythematosus reveals a link to hematological disease manifestations and autoantibody profile
• Download full text (pdf) of A survey of ficolin-3 activity in Systemic Lupus Erythematosus reveals a link to hematological disease manifestations and autoantibody profile

Comparative Genomic Analysis of the Pattern of Evolution of Male and Female Reproductive Proteins in Seed Beetles

Papachristos, Konstantinos; Sayadi, Ahmed; Arnqvist, Göran

Part of Genome Biology and Evolution, 2024

• DOI for Comparative Genomic Analysis of the Pattern of Evolution of Male and Female Reproductive Proteins in Seed Beetles
• Download full text (pdf) of Comparative Genomic Analysis of the Pattern of Evolution of Male and Female Reproductive Proteins in Seed Beetles

A chromosome-level assembly of the seed beetle Callosobruchus maculatus genome with annotation of its repetitive elements

Arnqvist, Göran; Westerberg, Ivar; Galbraith, James; Sayadi, Ahmed et al.

Part of G3, 2024

• DOI for A chromosome-level assembly of the seed beetle Callosobruchus maculatus genome with annotation of its repetitive elements
• Download full text (pdf) of A chromosome-level assembly of the seed beetle Callosobruchus maculatus genome with annotation of its repetitive elements

Large-scale phage-based screening reveals extensive pan-viral mimicry of host short linear motifs

Mihalič, Filip; Simonetti, Leandro; Giudice, Girolamo; Rubin Sander, Marie et al.

Part of Nature Communications, 2023

• DOI for Large-scale phage-based screening reveals extensive pan-viral mimicry of host short linear motifs
• Download full text (pdf) of Large-scale phage-based screening reveals extensive pan-viral mimicry of host short linear motifs

B cell polygenic risk scores associate with anti-dsDNA antibodies and nephritis in systemic lupus erythematosus

Hedenstedt, Anna; Reid, Sarah; Sayadi, Ahmed; Eloranta, Maija-Leena et al.

Part of Lupus Science and Medicine, 2023

• DOI for B cell polygenic risk scores associate with anti-dsDNA antibodies and nephritis in systemic lupus erythematosus
• Download full text (pdf) of B cell polygenic risk scores associate with anti-dsDNA antibodies and nephritis in systemic lupus erythematosus

A survey of ficolin-3 activity in Systemic Lupus Erythematosus reveals a link to hematological disease manifestations and autoantibody profile

Lindelöf, Linnea; Rantapää-Dahlqvist, Solbritt; Lundtoft, Christian; Sandling, Johanna K. et al.

Part of Journal of Autoimmunity, 2024

• DOI for A survey of ficolin-3 activity in Systemic Lupus Erythematosus reveals a link to hematological disease manifestations and autoantibody profile
• Download full text (pdf) of A survey of ficolin-3 activity in Systemic Lupus Erythematosus reveals a link to hematological disease manifestations and autoantibody profile

Comparative Genomic Analysis of the Pattern of Evolution of Male and Female Reproductive Proteins in Seed Beetles

Papachristos, Konstantinos; Sayadi, Ahmed; Arnqvist, Göran

Part of Genome Biology and Evolution, 2024

• DOI for Comparative Genomic Analysis of the Pattern of Evolution of Male and Female Reproductive Proteins in Seed Beetles
• Download full text (pdf) of Comparative Genomic Analysis of the Pattern of Evolution of Male and Female Reproductive Proteins in Seed Beetles

A chromosome-level assembly of the seed beetle Callosobruchus maculatus genome with annotation of its repetitive elements

Arnqvist, Göran; Westerberg, Ivar; Galbraith, James; Sayadi, Ahmed et al.

Part of G3, 2024

• DOI for A chromosome-level assembly of the seed beetle Callosobruchus maculatus genome with annotation of its repetitive elements
• Download full text (pdf) of A chromosome-level assembly of the seed beetle Callosobruchus maculatus genome with annotation of its repetitive elements

Large-scale phage-based screening reveals extensive pan-viral mimicry of host short linear motifs

Mihalič, Filip; Simonetti, Leandro; Giudice, Girolamo; Rubin Sander, Marie et al.

Part of Nature Communications, 2023

• DOI for Large-scale phage-based screening reveals extensive pan-viral mimicry of host short linear motifs
• Download full text (pdf) of Large-scale phage-based screening reveals extensive pan-viral mimicry of host short linear motifs

B cell polygenic risk scores associate with anti-dsDNA antibodies and nephritis in systemic lupus erythematosus

Hedenstedt, Anna; Reid, Sarah; Sayadi, Ahmed; Eloranta, Maija-Leena et al.

Part of Lupus Science and Medicine, 2023

• DOI for B cell polygenic risk scores associate with anti-dsDNA antibodies and nephritis in systemic lupus erythematosus
• Download full text (pdf) of B cell polygenic risk scores associate with anti-dsDNA antibodies and nephritis in systemic lupus erythematosus

Experimental Life History Evolution Results in Sex-specific Evolution of Gene Expression in Seed Beetles

Immonen, Elina; Sayadi, Ahmed; Stojkovic, Biljana; Savkovic, Uros et al.

Part of Genome Biology and Evolution, 2023

• DOI for Experimental Life History Evolution Results in Sex-specific Evolution of Gene Expression in Seed Beetles
• Download full text (pdf) of Experimental Life History Evolution Results in Sex-specific Evolution of Gene Expression in Seed Beetles

Proteome-scale mapping of binding sites in the unstructured regions of the human proteome

Benz, Caroline; Ali, Muhammad; Krystkowiak, Izabella; Simonetti, Leandro et al.

Part of Molecular Systems Biology, 2022

• DOI for Proteome-scale mapping of binding sites in the unstructured regions of the human proteome
• Download full text (pdf) of Proteome-scale mapping of binding sites in the unstructured regions of the human proteome

In silico promoter analysis and functional validation identify CmZFH, the co-regulator of hypoxia-responsive genes CmScylla and CmLPCAT

He, Li; Chen, Ivy W.; Zhang, Zan; Zheng, Wenping et al.

Part of Insect Biochemistry and Molecular Biology, 2022

• DOI for In silico promoter analysis and functional validation identify CmZFH, the co-regulator of hypoxia-responsive genes CmScylla and CmLPCAT

A possible genomic footprint of polygenic adaptation on population divergence in seed beetles?

Arnqvist, Göran; Sayadi, Ahmed

Part of Ecology and Evolution, 2022

• DOI for A possible genomic footprint of polygenic adaptation on population divergence in seed beetles?
• Download full text (pdf) of A possible genomic footprint of polygenic adaptation on population divergence in seed beetles?

Large scale discovery of coronavirus-host factor protein interaction motifs reveals SARS-CoV-2 specific mechanisms and vulnerabilities

Kruse, Thomas; Benz, Caroline; Garvanska, Dimitriya H.; Lindqvist, Richard et al.

Part of Nature Communications, 2021

• DOI for Large scale discovery of coronavirus-host factor protein interaction motifs reveals SARS-CoV-2 specific mechanisms and vulnerabilities
• Download full text (pdf) of Large scale discovery of coronavirus-host factor protein interaction motifs reveals SARS-CoV-2 specific mechanisms and vulnerabilities

Sexual conflict drives micro- and macroevolution of sexual dimorphism in immunity

Bagchi, Basabi; Corbel, Quentin; Khan, Imroze; Payne, Ellen et al.

Part of BMC Biology, 2021

• DOI for Sexual conflict drives micro- and macroevolution of sexual dimorphism in immunity
• Download full text (pdf) of Sexual conflict drives micro- and macroevolution of sexual dimorphism in immunity

Negative frequency dependent selection contributes to the maintenance of a global polymorphism in mitochondrial DNA

Novicic, Zorana Kurbalija; Sayadi, Ahmed; Jelic, Mihailo; Arnqvist, Göran

Part of BMC Evolutionary Biology, 2020

• DOI for Negative frequency dependent selection contributes to the maintenance of a global polymorphism in mitochondrial DNA
• Download full text (pdf) of Negative frequency dependent selection contributes to the maintenance of a global polymorphism in mitochondrial DNA

An experimental test of temperature-dependent selection on mitochondrial haplotypes in Callosobruchus maculatus seed beetles

Immonen, Elina; Berger, David; Sayadi, Ahmed; Liljestrand-Rönn, Johanna et al.

Part of Ecology and Evolution, p. 11387-11398, 2020

• DOI for An experimental test of temperature-dependent selection on mitochondrial haplotypes in Callosobruchus maculatus seed beetles
• Download full text (pdf) of An experimental test of temperature-dependent selection on mitochondrial haplotypes in Callosobruchus maculatus seed beetles

Identification of novel ejaculate proteins in a seed beetle and division of labour across male accessory reproductive glands

Bayram, Helen L.; Sayadi, Ahmed; Immonen, Elina; Arnqvist, Göran

Part of Insect biochemistry and molecular biology, p. 50-57, 2019

• DOI for Identification of novel ejaculate proteins in a seed beetle and division of labour across male accessory reproductive glands

The genomic footprint of sexual conflict

Sayadi, Ahmed; Martínez Barrio, Álvaro; Immonen, Elina; Dainat, Jacques et al.

Part of Nature Ecology & Evolution, p. 1725-1730, 2019

• DOI for The genomic footprint of sexual conflict
• Download full text (pdf) of The genomic footprint of sexual conflict

Novel seminal fluid proteins in the seed beetle Callosobruchus maculatus identified by a proteomic and transcriptomic approach

Bayram, Helen L.; Sayadi, Ahmed; Goenaga, Julieta; Immonen, Elina et al.

Part of Insect molecular biology (Print), p. 58-73, 2017

• DOI for Novel seminal fluid proteins in the seed beetle Callosobruchus maculatus identified by a proteomic and transcriptomic approach

Divergent evolution of life span associated with mitochondrial DNA evolution

Stojkovic, Biljana; Sayadi, Ahmed; Dordevic, Mirko; Jovic, Jelena et al.

Part of Evolution, p. 160-166, 2017

• DOI for Divergent evolution of life span associated with mitochondrial DNA evolution

The Evolution of Dark Matter in the Mitogenome of Seed Beetles

Sayadi, Ahmed; Immonen, Elina; Tellgren-Roth, Christian; Arnqvist, Göran

Part of Genome Biology and Evolution, p. 2697-2706, 2017

• DOI for The Evolution of Dark Matter in the Mitogenome of Seed Beetles
• Download full text (pdf) of The Evolution of Dark Matter in the Mitogenome of Seed Beetles

Mating Changes Sexually Dimorphic Gene Expression in the Seed Beetle Callosobruchus maculatus

Immonen, Elina; Sayadi, Ahmed; Bayram, Helen; Arnqvist, Göran

Part of Genome Biology and Evolution, p. 677-699, 2017

• DOI for Mating Changes Sexually Dimorphic Gene Expression in the Seed Beetle Callosobruchus maculatus
• Download full text (pdf) of Mating Changes Sexually Dimorphic Gene Expression in the Seed Beetle Callosobruchus maculatus

Negative frequency dependent selection on sympatric mtDNA haplotypes in Drosophila subobscura

Arnqvist, Göran; Novicic, Zorana Kurbalija; Castro, Jose A.; Sayadi, Ahmed

Part of Hereditas, 2016

• DOI for Negative frequency dependent selection on sympatric mtDNA haplotypes in Drosophila subobscura
• Download full text (pdf) of Negative frequency dependent selection on sympatric mtDNA haplotypes in Drosophila subobscura

The De Novo Transcriptome and Its Functional Annotation in the Seed Beetle Callosobruchus maculatus

Sayadi, Ahmed; Immonen, Elina; Bayram, Helen; Arnqvist, Göran

Part of PLOS ONE, 2016

• DOI for The De Novo Transcriptome and Its Functional Annotation in the Seed Beetle Callosobruchus maculatus
• Download full text (pdf) of The De Novo Transcriptome and Its Functional Annotation in the Seed Beetle Callosobruchus maculatus

Functional features of EVI1 and EVI1Δ324 isoforms of MECOM gene in genome-wide transcription regulation and oncogenicity.

Sayadi, Ahmed; Jeyakani, J; Seet, S H; Wei, C-L et al.

Part of Oncogene, p. 2311-2321, 2016

• DOI for Functional features of EVI1 and EVI1Δ324 isoforms of MECOM gene in genome-wide transcription regulation and oncogenicity.

Genome size correlates with reproductive fitness in seed beetles

Arnqvist, Göran; Sayadi, Ahmed; Immonen, Elina; Hotzy, Cosima et al.

Part of Proceedings of the Royal Society of London. Biological Sciences, 2015

• DOI for Genome size correlates with reproductive fitness in seed beetles

Mice carrying a hypomorphic Evi1 allele are embryonic viable but exhibit severe congenital heart defects

Bard-Chapeau, Emilie A; Szumska, Dorota; Jacob, Bindya; Chua, Belinda Q L et al.

Part of PLOS ONE, 2014

• DOI for Mice carrying a hypomorphic Evi1 allele are embryonic viable but exhibit severe congenital heart defects
• Download full text (pdf) of Mice carrying a hypomorphic Evi1 allele are embryonic viable but exhibit severe congenital heart defects

Transposon mutagenesis identifies genes driving hepatocellular carcinoma in a chronic hepatitis B mouse model.

Bard-Chapeau, Emilie A; Nguyen, Anh-Tuan; Rust, Alistair G; Sayadi, Ahmed et al.

Part of Nature Genetics, 2014

• DOI for Transposon mutagenesis identifies genes driving hepatocellular carcinoma in a chronic hepatitis B mouse model.

Zip14 expression induced by lipopolysaccharides in macrophages attenuates inflammatory response

Sayadi, Ahmed; Nguyen, Anh-Tuan; Bard, Frederic A; Bard-Chapeau, Emilie A

Part of Inflammation Research, 2013

• DOI for Zip14 expression induced by lipopolysaccharides in macrophages attenuates inflammatory response

Genetic variants and mutations of PPM1D control the response to DNA damage

Dudgeon, Crissy; Shreeram, Sathyavageeswaran; Tanoue, Kan; Mazur, Sharlyn J et al.

Part of Cell Cycle, 2013

• DOI for Genetic variants and mutations of PPM1D control the response to DNA damage

Interaction network of the 14-3-3 protein in the ancient protozoan parasite Giardia duodenalis.

Lalle, Marco; Camerini, Serena; Cecchetti, Serena; Sayadi, Ahmed et al.

Part of Journal of Proteome Research, p. 2666-2683, 2012

• DOI for Interaction network of the 14-3-3 protein in the ancient protozoan parasite Giardia duodenalis.

Exploiting Publicly Available Biological and Biochemical Information for the Discovery of Novel Short Linear Motifs

Sayadi, Ahmed; Briganti, Leonardo; Tramontano, Anna; Via, Allegra

Part of PLOS ONE, 2011

• DOI for Exploiting Publicly Available Biological and Biochemical Information for the Discovery of Novel Short Linear Motifs
• Download full text (pdf) of Exploiting Publicly Available Biological and Biochemical Information for the Discovery of Novel Short Linear Motifs

ELM: the status of the 2010 eukaryotic linear motif resource.

Gould, Cathryn M; Diella, Francesca; Via, Allegra; Puntervoll, Pål et al.

Part of Nucleic Acids Research, 2010

• DOI for ELM: the status of the 2010 eukaryotic linear motif resource.
• Download full text (pdf) of ELM: the status of the 2010 eukaryotic linear motif resource.

From genetic predisposition to clinical outcome in systemic lupus erythematosus: construction and validation of sub-phenotype-specific genetic risk scores

Reid, Sarah; Sandling, Johanna K.; Pucholt, Pascal; Sayadi, Ahmed et al.

The Lectin Pathway of Complement in Systemic Lupus Erythematosus: MAP-1 as a Marker of Hematological Manifestations and Elevated Type I Interferon Activity

Lindelöf, Linnea; Garred, Peter; Hong, Mun-Gwan; Wahl Vælum, Sasha et al.