Anna Klemm

A method for Boolean analysis of protein interactions at a molecular level

Raykova, Doroteya; Kermpatsou, Despoina; Malmqvist, Tony; Harrison, Philip J et al.

Part of Nature Communications, 2022

• DOI for A method for Boolean analysis of protein interactions at a molecular level
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Spatial Statistics for Understanding Tissue Organization

Beháňová, Andrea; Klemm, Anna H; Wählby, Carolina

Part of Frontiers in Physiology, 2022

• DOI for Spatial Statistics for Understanding Tissue Organization
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Automated detection of vascular remodeling in human tumor draining lymph nodes by the deep learning tool HEV-finder

Bekkhus, Tove; Avenel, Christophe; Hanna, Sabella; Franzén Boger, Mathias et al.

Part of Journal of Pathology, p. 4-11, 2022

• DOI for Automated detection of vascular remodeling in human tumor draining lymph nodes by the deep learning tool HEV-finder
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A Hitchhiker's guide through the bio‐image analysis software universe

Haase, Robert; Fazeli, Elnaz; Legland, David; Doube, Michael et al.

Part of FEBS Letters, p. 2472-2485, 2022

• DOI for A Hitchhiker's guide through the bio‐image analysis software universe
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Deep Learning in Image Cytometry: A Review

Gupta, Anindya; Harrison, Philip J.; Wieslander, Håkan; Pielawski, Nicolas et al.

Part of Cytometry Part A, p. 366-380, 2019

• DOI for Deep Learning in Image Cytometry: A Review
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Metaphase kinetochore movements are regulated by kinesin-8 motors and microtubule dynamic instability.

Klemm, Anna H; Bosilj, Agneza; Glunčic, Matko; Pavin, Nenad et al.

Part of Molecular Biology of the Cell, p. 1332-1345, 2018

• DOI for Metaphase kinetochore movements are regulated by kinesin-8 motors and microtubule dynamic instability.

In situ mapping of activated PDGFRβ defines a prognostic discrepancy between histological subtypes of NSCLC

Lindberg, Amanda; Hellberg, Louise; Grandon, Anaïs; Yu, Hui et al.

Part of Cell Communication and Signaling, 2026

• DOI for In situ mapping of activated PDGFRβ defines a prognostic discrepancy between histological subtypes of NSCLC
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The crucial role of bioimage analysts in scientific research and publication

Cimini, Beth A.; Bankhead, Peter; D'Antuono, Rocco; Fazeli, Elnaz et al.

Part of Journal of Cell Science, 2024

• DOI for The crucial role of bioimage analysts in scientific research and publication
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TissUUmaps 3: Improvements in interactive visualization, exploration, and quality assessment of large-scale spatial omics data

Pielawski, Nicolas; Andersson, Axel; Avenel, Christophe; Beháňová, Andrea et al.

Part of Heliyon, 2023

• DOI for TissUUmaps 3: Improvements in interactive visualization, exploration, and quality assessment of large-scale spatial omics data
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Visualization and quality control tools for large-scale multiplex tissue analysis in TissUUmaps3

Beháňová, Andrea; Avenel, Christophe; Andersson, Axel; Chelebian, Eduard et al.

Part of Biological Imaging, 2023

• DOI for Visualization and quality control tools for large-scale multiplex tissue analysis in TissUUmaps3

A method for Boolean analysis of protein interactions at a molecular level

Raykova, Doroteya; Kermpatsou, Despoina; Malmqvist, Tony; Harrison, Philip J et al.

Part of Nature Communications, 2022

• DOI for A method for Boolean analysis of protein interactions at a molecular level
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In situ mapping of activated PDGFRβ defines a prognostic discrepancy between histological subtypes of NSCLC

Lindberg, Amanda; Hellberg, Louise; Grandon, Anaïs; Yu, Hui et al.

Part of Cell Communication and Signaling, 2026

• DOI for In situ mapping of activated PDGFRβ defines a prognostic discrepancy between histological subtypes of NSCLC
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The crucial role of bioimage analysts in scientific research and publication

Cimini, Beth A.; Bankhead, Peter; D'Antuono, Rocco; Fazeli, Elnaz et al.

Part of Journal of Cell Science, 2024

• DOI for The crucial role of bioimage analysts in scientific research and publication
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TissUUmaps 3: Improvements in interactive visualization, exploration, and quality assessment of large-scale spatial omics data

Pielawski, Nicolas; Andersson, Axel; Avenel, Christophe; Beháňová, Andrea et al.

Part of Heliyon, 2023

• DOI for TissUUmaps 3: Improvements in interactive visualization, exploration, and quality assessment of large-scale spatial omics data
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Visualization and quality control tools for large-scale multiplex tissue analysis in TissUUmaps3

Beháňová, Andrea; Avenel, Christophe; Andersson, Axel; Chelebian, Eduard et al.

Part of Biological Imaging, 2023

• DOI for Visualization and quality control tools for large-scale multiplex tissue analysis in TissUUmaps3

A method for Boolean analysis of protein interactions at a molecular level

Raykova, Doroteya; Kermpatsou, Despoina; Malmqvist, Tony; Harrison, Philip J et al.

Part of Nature Communications, 2022

• DOI for A method for Boolean analysis of protein interactions at a molecular level
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SLC38A10 Regulate Glutamate Homeostasis and Modulate the AKT/TSC2/mTOR Pathway in Mouse Primary Cortex Cells

Tripathi, Rekha; Aggarwal, Tanya; Lindberg, Frida A.; Klemm, Anna H et al.

Part of Frontiers in cell and developmental biology, 2022

• DOI for SLC38A10 Regulate Glutamate Homeostasis and Modulate the AKT/TSC2/mTOR Pathway in Mouse Primary Cortex Cells
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Automated detection of vascular remodeling in human tumor draining lymph nodes by the deep learning tool HEV-finder

Bekkhus, Tove; Avenel, Christophe; Hanna, Sabella; Franzén Boger, Mathias et al.

Part of Journal of Pathology, p. 4-11, 2022

• DOI for Automated detection of vascular remodeling in human tumor draining lymph nodes by the deep learning tool HEV-finder
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ImageJ and CellProfiler: Complements in Open‐Source Bioimage Analysis

Dobson, Ellen T. A.; Cimini, Beth; Klemm, Anna H.; Wählby, Carolina et al.

Part of Current protocols, 2021

• DOI for ImageJ and CellProfiler: Complements in Open‐Source Bioimage Analysis

Machine learning for cell classification and neighborhood analysis in glioma tissue

Solorzano, Leslie; Wik, Lina; Bontell, Thomas Olsson; Wang, Yuyu et al.

Part of Cytometry Part A, p. 1176-1186, 2021

• DOI for Machine learning for cell classification and neighborhood analysis in glioma tissue
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Highlights from the 2016-2020 NEUBIAS training schools for Bioimage Analysts: a success story and key asset for analysts and life scientists

Martins, Gabriel G.; Cordelières, Fabrice P.; Colombelli, Julien; D’Antuono, Rocco et al.

Part of F1000 Research, p. 334-334, 2021

• DOI for Highlights from the 2016-2020 NEUBIAS training schools for Bioimage Analysts: a success story and key asset for analysts and life scientists
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Bioimage analysis workflows: community resources to navigate through a complex ecosystem

Paul-Gilloteaux, Perrine; Tosi, Sébastien; Hériché, Jean-Karim; Gaignard, Alban et al.

Part of F1000 Research, p. 320-320, 2021

• DOI for Bioimage analysis workflows: community resources to navigate through a complex ecosystem

TrackMate - My Favorite Image Analysis Tool, by Neubias Members

Klemm, Anna

Part of Imaging & Microscopy, 2020

Automated identification of the mouse brain’s spatial compartments from in situ sequencing data

Partel, Gabriele; Hilscher, Markus M.; Milli, Giorgia; Solorzano, Leslie et al.

Part of BMC Biology, 2020

• DOI for Automated identification of the mouse brain’s spatial compartments from in situ sequencing data
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Estimating hemodynamic shear stress in murine peripheral collateral arteries by two-photon line scanning

Lasch, Manuel; Nekolla, Katharina; Klemm, Anna H; Buchheim, Judith-Irina et al.

Part of Molecular and Cellular Biochemistry, p. 41-51, 2019

• DOI for Estimating hemodynamic shear stress in murine peripheral collateral arteries by two-photon line scanning

Tracking Microscope Performance: A Workflow to Compare Point Spread Function Evaluations Over Time

Klemm, Anna H.; Thomae, Andreas W.; Wachal, Katarina; Dietzel, Steffen

Part of Microscopy and Microanalysis, p. 699-704, 2019

• DOI for Tracking Microscope Performance: A Workflow to Compare Point Spread Function Evaluations Over Time

Metaphase kinetochore movements are regulated by kinesin-8 motors and microtubule dynamic instability.

Klemm, Anna H; Bosilj, Agneza; Glunčic, Matko; Pavin, Nenad et al.

Part of Molecular Biology of the Cell, p. 1332-1345, 2018

• DOI for Metaphase kinetochore movements are regulated by kinesin-8 motors and microtubule dynamic instability.

Pumilio2-deficient mice show a predisposition for epilepsy.

Follwaczny, Philipp; Schieweck, Rico; Riedemann, Therese; Demleitner, Antonia et al.

Part of Disease Models and Mechanisms, p. 1333-1342, 2017

• DOI for Pumilio2-deficient mice show a predisposition for epilepsy.

Overlap microtubules link sister k-fibres and balance the forces on bi-oriented kinetochores.

Kajtez, Janko; Solomatina, Anastasia; Novak, Maja; Polak, Bruno et al.

Part of Nature Communications, 2016

• DOI for Overlap microtubules link sister k-fibres and balance the forces on bi-oriented kinetochores.

Paired arrangement of kinetochores together with microtubule pivoting and dynamics drive kinetochore capture in meiosis I.

Cojoc, Gheorghe; Florescu, Ana-Maria; Krull, Alexander; Klemm, Anna H et al.

Part of Scientific Reports, 2016

• DOI for Paired arrangement of kinetochores together with microtubule pivoting and dynamics drive kinetochore capture in meiosis I.

Pivoting of microtubules around the spindle pole accelerates kinetochore capture.

Kalinina, Iana; Nandi, Amitabha; Delivani, Petrina; Chacón, Mariola R et al.

Part of Nature Cell Biology, p. 82-7, 2013

• DOI for Pivoting of microtubules around the spindle pole accelerates kinetochore capture.

Focal adhesion kinase stabilizes the cytoskeleton.

Fabry, Ben; Klemm, Anna H; Kienle, Sandra; Schäffer, Tilman E et al.

Part of Biophysical Journal, p. 2131-8, 2011

• DOI for Focal adhesion kinase stabilizes the cytoskeleton.

The influence of Pyk2 on the mechanical properties in fibroblasts.

Klemm, Anna H; Kienle, Sandra; Rheinlaender, Johannes; Schäffer, Tilman E et al.

Part of Biochemical and Biophysical Research Communications - BBRC, p. 694-7, 2010

• DOI for The influence of Pyk2 on the mechanical properties in fibroblasts.

Comparing the mechanical influence of vinculin, focal adhesion kinase and p53 in mouse embryonic fibroblasts.

Klemm, Anna H; Diez, Gerold; Alonso, Josè-Luis; Goldmann, Wolfgang H

Part of Biochemical and Biophysical Research Communications - BBRC, p. 799-801, 2009

• DOI for Comparing the mechanical influence of vinculin, focal adhesion kinase and p53 in mouse embryonic fibroblasts.

Thermodynamic evidence of non-muscle myosin II-lipid-membrane interaction.

Schewkunow, Vitali; Sharma, Karan P; Diez, Gerold; Klemm, Anna H et al.

Part of Biochemical and Biophysical Research Communications - BBRC, p. 500-5, 2008

• DOI for Thermodynamic evidence of non-muscle myosin II-lipid-membrane interaction.

CapZ-lipid membrane interactions: a computer analysis.

Smith, James; Diez, Gerold; Klemm, Anna H; Schewkunow, Vitali et al.

Part of Theoretical Biology and Medical Modelling, 2006

• DOI for CapZ-lipid membrane interactions: a computer analysis.

Mechano-chemical signaling in F9 cells.

Klemm, Anna H; Suchodolski, Klaudiusz; Goldmann, Wolfgang H

Part of Cell Biology International, p. 755-9, 2006

• DOI for Mechano-chemical signaling in F9 cells.

Spatial Statistics for Understanding Tissue Organization

Beháňová, Andrea; Klemm, Anna H; Wählby, Carolina

Part of Frontiers in Physiology, 2022

• DOI for Spatial Statistics for Understanding Tissue Organization
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A Hitchhiker's guide through the bio‐image analysis software universe

Haase, Robert; Fazeli, Elnaz; Legland, David; Doube, Michael et al.

Part of FEBS Letters, p. 2472-2485, 2022

• DOI for A Hitchhiker's guide through the bio‐image analysis software universe
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Deep Learning in Image Cytometry: A Review

Gupta, Anindya; Harrison, Philip J.; Wieslander, Håkan; Pielawski, Nicolas et al.

Part of Cytometry Part A, p. 366-380, 2019

• DOI for Deep Learning in Image Cytometry: A Review
• Download full text (pdf) of Deep Learning in Image Cytometry: A Review

Identification of spatial compartments in tissue from in situ sequencing data

Partel, Gabriele; Hilscher, Markus M.; Giorgia, Milli; Solorzano, Leslie et al.

• DOI for Identification of spatial compartments in tissue from in situ sequencing data

TissUUmaps 3: Improvements in interactive visualization, exploration, and quality assessment of large-scale spatial omics data

Pielawski, Nicolas; Andersson, Axel; Avenel, Christophe; Behanova, Andrea et al.

• Download full text (pdf) of TissUUmaps 3: Improvements in interactive visualization, exploration, and quality assessment of large-scale spatial omics data

A workflow for high-throughput screening, data analysis, processing, and hit identification

Hansel, Catherine S.; Yousefian, Schayan; Klemm, Anna H.; Carreras-Puigvert, Jordi

2020