Guilherme Borges Dias

A Chromosome-Level Genome Assembly and Annotation for the Clouded Apollo Butterfly (Parnassius mnemosyne): A Species of Global Conservation Concern

Höglund, Jacob; Dias, Guilherme; Olsen, Remi-André; Soares, André et al.

Part of Genome Biology and Evolution, 2024

• DOI for A Chromosome-Level Genome Assembly and Annotation for the Clouded Apollo Butterfly (Parnassius mnemosyne): A Species of Global Conservation Concern
• Download full text (pdf) of A Chromosome-Level Genome Assembly and Annotation for the Clouded Apollo Butterfly (Parnassius mnemosyne): A Species of Global Conservation Concern

Local assembly of long reads enables phylogenomics of transposable elements in a polyploid cell line

Han, Shunhua; Dias, Guilherme; Basting, Preston J; Viswanatha, Raghuvir et al.

Part of Nucleic Acids Research, 2022

• DOI for Local assembly of long reads enables phylogenomics of transposable elements in a polyploid cell line

Ongoing transposition in cell culture reveals the phylogeny of diverse Drosophila S2 sublines.

Han, Shunhua; Dias, Guilherme; Basting, Preston J; Nelson, Michael G et al.

Part of Genetics, 2022

• DOI for Ongoing transposition in cell culture reveals the phylogeny of diverse Drosophila S2 sublines.

Haplotype-resolved genome assembly enables gene discovery in the red palm weevil Rhynchophorus ferrugineus.

Dias, Guilherme; Altammami, Musaad A; El-Shafie, Hamadttu A F; Alhoshani, Fahad M et al.

Part of Scientific Reports, p. 9987, 2021

• DOI for Haplotype-resolved genome assembly enables gene discovery in the red palm weevil Rhynchophorus ferrugineus.

An eutherian intronic sequence gave rise to a major satellite DNA in Platyrrhini.

Valeri, Mirela Pelizaro; Dias, Guilherme; Pereira, Valéria do Socorro; Campos Silva Kuhn, Gustavo et al.

Part of Biology Letters, 2018

• DOI for An eutherian intronic sequence gave rise to a major satellite DNA in Platyrrhini.

Genome Variation in Three Anthophora Bee Species Reflects Divergent Demographic Histories

Taliadoros, Demetris; Soares, André; Dias, Guilherme; Bunikis, Ignas et al.

Part of Molecular Ecology, 2025

• DOI for Genome Variation in Three Anthophora Bee Species Reflects Divergent Demographic Histories
• Download full text (pdf) of Genome Variation in Three Anthophora Bee Species Reflects Divergent Demographic Histories

Genomic and secretomic analyses of Blastobotrys yeasts reveal key xylanases for biomass decomposition

Ravn, Jonas; Ristinmaa, Amanda S.; Mazurkewich, Scott; Dias, Guilherme B. et al.

Part of Applied Microbiology and Biotechnology, 2025

• DOI for Genomic and secretomic analyses of Blastobotrys yeasts reveal key xylanases for biomass decomposition
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The European Reference Genome Atlas: piloting a decentralised approach to equitable biodiversity genomics

Mc Cartney, Ann M.; Formenti, Giulio; Mouton, Alice; De Panis, Diego et al.

Part of NPJ BIODIVERSITY, 2024

• DOI for The European Reference Genome Atlas: piloting a decentralised approach to equitable biodiversity genomics
• Download full text (pdf) of The European Reference Genome Atlas: piloting a decentralised approach to equitable biodiversity genomics

A Chromosome-Level Genome Assembly and Annotation for the Clouded Apollo Butterfly (Parnassius mnemosyne): A Species of Global Conservation Concern

Höglund, Jacob; Dias, Guilherme; Olsen, Remi-André; Soares, André et al.

Part of Genome Biology and Evolution, 2024

• DOI for A Chromosome-Level Genome Assembly and Annotation for the Clouded Apollo Butterfly (Parnassius mnemosyne): A Species of Global Conservation Concern
• Download full text (pdf) of A Chromosome-Level Genome Assembly and Annotation for the Clouded Apollo Butterfly (Parnassius mnemosyne): A Species of Global Conservation Concern

Omics in the Red Palm Weevil Rhynchophorus ferrugineus (Olivier) (Coleoptera: Curculionidae)

Manee, Manee M; Alqahtani, Fahad H; Al-Shomrani, Badr M; El-Shafie, Hamadttu A F et al.

Part of Insects, 2023

• DOI for Omics in the Red Palm Weevil Rhynchophorus ferrugineus (Olivier) (Coleoptera: Curculionidae)

Genome Variation in Three Anthophora Bee Species Reflects Divergent Demographic Histories

Taliadoros, Demetris; Soares, André; Dias, Guilherme; Bunikis, Ignas et al.

Part of Molecular Ecology, 2025

• DOI for Genome Variation in Three Anthophora Bee Species Reflects Divergent Demographic Histories
• Download full text (pdf) of Genome Variation in Three Anthophora Bee Species Reflects Divergent Demographic Histories

Genomic and secretomic analyses of Blastobotrys yeasts reveal key xylanases for biomass decomposition

Ravn, Jonas; Ristinmaa, Amanda S.; Mazurkewich, Scott; Dias, Guilherme B. et al.

Part of Applied Microbiology and Biotechnology, 2025

• DOI for Genomic and secretomic analyses of Blastobotrys yeasts reveal key xylanases for biomass decomposition
• Download full text (pdf) of Genomic and secretomic analyses of Blastobotrys yeasts reveal key xylanases for biomass decomposition

The European Reference Genome Atlas: piloting a decentralised approach to equitable biodiversity genomics

Mc Cartney, Ann M.; Formenti, Giulio; Mouton, Alice; De Panis, Diego et al.

Part of NPJ BIODIVERSITY, 2024

• DOI for The European Reference Genome Atlas: piloting a decentralised approach to equitable biodiversity genomics
• Download full text (pdf) of The European Reference Genome Atlas: piloting a decentralised approach to equitable biodiversity genomics

A Chromosome-Level Genome Assembly and Annotation for the Clouded Apollo Butterfly (Parnassius mnemosyne): A Species of Global Conservation Concern

Höglund, Jacob; Dias, Guilherme; Olsen, Remi-André; Soares, André et al.

Part of Genome Biology and Evolution, 2024

• DOI for A Chromosome-Level Genome Assembly and Annotation for the Clouded Apollo Butterfly (Parnassius mnemosyne): A Species of Global Conservation Concern
• Download full text (pdf) of A Chromosome-Level Genome Assembly and Annotation for the Clouded Apollo Butterfly (Parnassius mnemosyne): A Species of Global Conservation Concern

Omics in the Red Palm Weevil Rhynchophorus ferrugineus (Olivier) (Coleoptera: Curculionidae)

Manee, Manee M; Alqahtani, Fahad H; Al-Shomrani, Badr M; El-Shafie, Hamadttu A F et al.

Part of Insects, 2023

• DOI for Omics in the Red Palm Weevil Rhynchophorus ferrugineus (Olivier) (Coleoptera: Curculionidae)

Local assembly of long reads enables phylogenomics of transposable elements in a polyploid cell line

Han, Shunhua; Dias, Guilherme; Basting, Preston J; Viswanatha, Raghuvir et al.

Part of Nucleic Acids Research, 2022

• DOI for Local assembly of long reads enables phylogenomics of transposable elements in a polyploid cell line

Ongoing transposition in cell culture reveals the phylogeny of diverse Drosophila S2 sublines.

Han, Shunhua; Dias, Guilherme; Basting, Preston J; Nelson, Michael G et al.

Part of Genetics, 2022

• DOI for Ongoing transposition in cell culture reveals the phylogeny of diverse Drosophila S2 sublines.

Structure, Organization, and Evolution of Satellite DNAs: Insights from the Drosophila repleta and D. virilis Species Groups.

Kuhn, Gustavo C S; Heringer, Pedro; Dias, Guilherme

Part of Progress in molecular and subcellular biology, p. 27-56, 2021

• DOI for Structure, Organization, and Evolution of Satellite DNAs: Insights from the Drosophila repleta and D. virilis Species Groups.

Transposable element profiles reveal cell line identity and loss of heterozygosity in Drosophila cell culture.

Han, Shunhua; Dias, Guilherme; Dias, Guilherme B; Luhur, Arthur et al.

Part of Genetics, 2021

• DOI for Transposable element profiles reveal cell line identity and loss of heterozygosity in Drosophila cell culture.

First Description of a Satellite DNA in Manatees' Centromeric Regions.

Valeri, Mirela Pelizaro; Dias, Guilherme; do Espírito Santo, Alice Alves; Moreira, Camila Nascimento et al.

Part of Frontiers in genetics, p. 694866, 2021

• DOI for First Description of a Satellite DNA in Manatees' Centromeric Regions.

Complete mitochondrial genome of the longhorn date palm stem borer Jebusaea hammerschmidtii (Reiche, 1878).

Dias, Guilherme; Aldossary, Ahmad M; El-Shafie, Hamadttu A F; Alhoshani, Fahad M et al.

Part of Mitochondrial DNA Part B, p. 3214-3216, 2021

• DOI for Complete mitochondrial genome of the longhorn date palm stem borer Jebusaea hammerschmidtii (Reiche, 1878).

Haplotype-resolved genome assembly enables gene discovery in the red palm weevil Rhynchophorus ferrugineus.

Dias, Guilherme; Altammami, Musaad A; El-Shafie, Hamadttu A F; Alhoshani, Fahad M et al.

Part of Scientific Reports, p. 9987, 2021

• DOI for Haplotype-resolved genome assembly enables gene discovery in the red palm weevil Rhynchophorus ferrugineus.

Hybrid dysgenesis in Drosophila virilis results in clusters of mitotic recombination and loss-of-heterozygosity but leaves meiotic recombination unaltered.

Hemmer, Lucas W; Dias, Guilherme; Smith, Brittny; Van Vaerenberghe, Kelley et al.

Part of Mobile DNA, p. 10, 2020

• DOI for Hybrid dysgenesis in Drosophila virilis results in clusters of mitotic recombination and loss-of-heterozygosity but leaves meiotic recombination unaltered.

Characterization of Satellite DNAs in Squirrel Monkeys genus Saimiri (Cebidae, Platyrrhini).

Valeri, Mirela Pelizaro; Dias, Guilherme; Moreira, Camila Nascimento; Yonenaga-Yassuda, Yatiyo et al.

Part of Scientific Reports, p. 7783, 2020

• DOI for Characterization of Satellite DNAs in Squirrel Monkeys genus Saimiri (Cebidae, Platyrrhini).

Phased Diploid Genome Assemblies for Three Strains of Candida albicans from Oak Trees.

Hamlin, Jennafer A P; Dias, Guilherme; Bergman, Casey M; Bensasson, Douda

Part of G3, p. 3547-3554, 2019

• DOI for Phased Diploid Genome Assemblies for Three Strains of Candida albicans from Oak Trees.

De novo identification of satellite DNAs in the sequenced genomes of Drosophila virilis and D. americana using the RepeatExplorer and TAREAN pipelines.

Silva, Bráulio S M L; Heringer, Pedro; Dias, Guilherme; Svartman, Marta et al.

Part of PLOS ONE, 2019

• DOI for De novo identification of satellite DNAs in the sequenced genomes of Drosophila virilis and D. americana using the RepeatExplorer and TAREAN pipelines.

An eutherian intronic sequence gave rise to a major satellite DNA in Platyrrhini.

Valeri, Mirela Pelizaro; Dias, Guilherme; Pereira, Valéria do Socorro; Campos Silva Kuhn, Gustavo et al.

Part of Biology Letters, 2018

• DOI for An eutherian intronic sequence gave rise to a major satellite DNA in Platyrrhini.

Concurrent Duplication of Drosophila Cid and Cenp-C Genes Resulted in Accelerated Evolution and Male Germline-Biased Expression of the New Copies.

Teixeira, José R; Dias, Guilherme; Svartman, Marta; Ruiz, Alfredo et al.

Part of Journal of Molecular Evolution, p. 353-364, 2018

• DOI for Concurrent Duplication of Drosophila Cid and Cenp-C Genes Resulted in Accelerated Evolution and Male Germline-Biased Expression of the New Copies.

High-throughput analysis of the satellitome revealed enormous diversity of satellite DNAs in the neo-Y chromosome of the cricket Eneoptera surinamensis.

Palacios-Gimenez, Octavio Manuel; Dias, Guilherme; de Lima, Leonardo Gomes; Kuhn, Gustavo Campos E Silva et al.

Part of Scientific Reports, p. 6422, 2017

• DOI for High-throughput analysis of the satellitome revealed enormous diversity of satellite DNAs in the neo-Y chromosome of the cricket Eneoptera surinamensis.

Identification and characterization of a subtelomeric satellite DNA in Callitrichini monkeys.

Araújo, Naiara Pereira; de Lima, Leonardo Gomes; Dias, Guilherme; Kuhn, Gustavo Campos Silva et al.

Part of DNA research, p. 377-385, 2017

• DOI for Identification and characterization of a subtelomeric satellite DNA in Callitrichini monkeys.

A Horizontally Transferred Autonomous Helitron Became a Full Polydnavirus Segment in Cotesia vestalis.

Heringer, Pedro; Dias, Guilherme; Kuhn, Gustavo C S

Part of G3, p. 3925-3935, 2017

• DOI for A Horizontally Transferred Autonomous Helitron Became a Full Polydnavirus Segment in Cotesia vestalis.

Helitrons in Drosophila: Chromatin modulation and tandem insertions.

Dias, Guilherme; Heringer, Pedro; Kuhn, Gustavo C S

Part of Mobile genetic elements, 2016

• DOI for Helitrons in Drosophila: Chromatin modulation and tandem insertions.

The complete mitochondrial genomes of two Atlantic spiny rats, genus Trinomys (Rodentia: Echimyidae), from low-pass shotgun sequencing

Araújo, Naiara Pereira; Dias, Guilherme; Amaro, Beatriz Dias; Kuhn, Gustavo Campos Silva et al.

Part of Gene Reports, p. 18-22, 2016

• DOI for The complete mitochondrial genomes of two Atlantic spiny rats, genus Trinomys (Rodentia: Echimyidae), from low-pass shotgun sequencing

Helitrons shaping the genomic architecture of Drosophila: enrichment of DINE-TR1 in α- and β-heterochromatin, satellite DNA emergence, and piRNA expression.

Dias, Guilherme; Heringer, Pedro; Svartman, Marta; Kuhn, Gustavo C S

Part of Chromosome Research, p. 597-613, 2015

• DOI for Helitrons shaping the genomic architecture of Drosophila: enrichment of DINE-TR1 in α- and β-heterochromatin, satellite DNA emergence, and piRNA expression.

Genomics of ecological adaptation in cactophilic Drosophila.

Guillén, Yolanda; Rius, Núria; Delprat, Alejandra; Williford, Anna et al.

Part of Genome Biology and Evolution, p. 349-66, 2014

• DOI for Genomics of ecological adaptation in cactophilic Drosophila.

Tetris is a foldback transposon that provided the building blocks for an emerging satellite DNA of Drosophila virilis.

Dias, Guilherme; Svartman, Marta; Delprat, Alejandra; Ruiz, Alfredo et al.

Part of Genome Biology and Evolution, p. 1302-13, 2014

• DOI for Tetris is a foldback transposon that provided the building blocks for an emerging satellite DNA of Drosophila virilis.