Jonas Windhager
Bioinformatician at Department of Information Technology; Vi3; Image Analysis
- Telephone:
- +46 18 471 12 32
- E-mail:
- jonas.windhager@it.uu.se
- Visiting address:
- Hus 10, Regementsvägen 10
- Postal address:
- Box 524
751 20 UPPSALA
Short presentation
BioImage Analyst / Research Software Engineer
SciLifeLab BioImage Informatics (BIIF) Unit
Publications
Recent publications
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Part of npj Digital Medicine, 2026
- DOI for Droplet microfluidics with image texture quantification for detection of rare antibiotic-resistant subpopulations from bloodstream infections
- Download full text (pdf) of Droplet microfluidics with image texture quantification for detection of rare antibiotic-resistant subpopulations from bloodstream infections
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Part of Science Advances, 2025
- DOI for Droplet microfluidics-based detection of rare antibiotic-resistant subpopulations in Escherichia coli from bloodstream infections
- Download full text (pdf) of Droplet microfluidics-based detection of rare antibiotic-resistant subpopulations in Escherichia coli from bloodstream infections
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Points2Regions: Fast, interactive clustering of imaging-based spatial transcriptomics data
Part of Cytometry Part A, 2024
- DOI for Points2Regions: Fast, interactive clustering of imaging-based spatial transcriptomics data
- Download full text (pdf) of Points2Regions: Fast, interactive clustering of imaging-based spatial transcriptomics data
-
An end-to-end workflow for multiplexed image processing and analysis
Part of Nature Protocols, p. 3565-3613, 2023
All publications
Articles in journal
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Part of npj Digital Medicine, 2026
- DOI for Droplet microfluidics with image texture quantification for detection of rare antibiotic-resistant subpopulations from bloodstream infections
- Download full text (pdf) of Droplet microfluidics with image texture quantification for detection of rare antibiotic-resistant subpopulations from bloodstream infections
-
Part of Science Advances, 2025
- DOI for Droplet microfluidics-based detection of rare antibiotic-resistant subpopulations in Escherichia coli from bloodstream infections
- Download full text (pdf) of Droplet microfluidics-based detection of rare antibiotic-resistant subpopulations in Escherichia coli from bloodstream infections
-
Points2Regions: Fast, interactive clustering of imaging-based spatial transcriptomics data
Part of Cytometry Part A, 2024
- DOI for Points2Regions: Fast, interactive clustering of imaging-based spatial transcriptomics data
- Download full text (pdf) of Points2Regions: Fast, interactive clustering of imaging-based spatial transcriptomics data
-
An end-to-end workflow for multiplexed image processing and analysis
Part of Nature Protocols, p. 3565-3613, 2023