Niclas Backström
Professor , Head of Program for Evolutionary Biology at Department of Ecology and Genetics; Evolutionary Biology
- Telephone:
- +46 18 471 64 15
- E-mail:
- niclas.backstrom@ebc.uu.se
- Visiting address:
- Evolutionsbiologiskt centrum
Norbyvägen 18D
752 36 UPPSALA - Postal address:
- Evolutionsbiologiskt centrum
Norbyvägen 18D
752 36 UPPSALA
- CV:
- Download CV
Short presentation
Characterizing the genetic basis of traits of importance for local adaptation and species recognition is a major aim for evolutionary biologists of today.
We use a combination of genetic mapping, population genetics and comparative genomics approaches to study the speciation process, the genetic basis of adaptive traits and patterns of genome evolution. We are primarily using natural populations of butterflies as study organisms.
Biography
- 2020 – Professor (Biology: Evolutionary Genomics), Department of Ecology and Genetics, Evolutionary Biology Program, Uppsala University.
- 2018 – 2020 Senior lecturer, (Associate Professor), Department of Ecology and Genetics, Evolutionary Biology Program, Uppsala University.
- 2017 – 2018 Associate senior lecturer, (Assistant Professor), Department of Ecology and Genetics, Evolutionary Biology Program, Uppsala University.
- 2017 Awarded Title of Docent in Biology with specialization in Evolutionary Genetics, Uppsala University
- 2014 – 2016 Assistant Professor, Department of Ecology and Genetics, Evolutionary Biology Program, Uppsala University. Funded by the Swedish Research Council.
- 2012 - 2013 Repatriation research fellow, Department of Ecology and Genetics, Evolutionary Biology Program, Uppsala University. Funded by the Swedish Research Council.
- 2009 - 2012 Postdoctoral research fellow, Department of Organismic and Evolutionary Biology, Museum of Comparative Zoology, Harvard University. Funded by the Swedish Research Council.
- 2005 - 2009 PhD in Evolutionary Genetics, Department of Ecology and Genetics, Evolutionary Biology Program, Uppsala University.
- 2000 - 2004 Master’s Degree (MSc) in Biology, Uppsala University
Research
Since the Modern Synthesis, when Darwin’s model of evolution by natural selection was combined with principles of chromosome inheritance and population genetic theory, it has been appreciated that genetic approaches are central for our understanding of local adaptation and the forces that drive population differentiation and speciation. However, little is known about the underlying mechanisms.
Examples of core questions that still are largely unresolved are: What genetic elements underlie adaptations and population differentiation and how are they distributed over the genome? How many loci are involved and what proportional effect does each locus have? How important is epistasis and pleiotropy in general and in specific cases? What are the causes and consequences of molecular factors like mutation, recombination, gene conversion and chromosome rearrangements? Are functional changes the result of expression differences or structural changes?
Our research aims at understanding the genetic underpinnings of local adaptation, population differentiation and speciation and to quantify how variation in karyotype structure and recombination rate affect the genome and the potential for adaptation. We address these questions using both classical genetic methods and new genomic tools.
Birds and butterflies demonstrate a copious diversity in phenotypic traits and adaptations. They are widespread, generally abundant and often eye-catching. As a result, birds and butterflies have for long been tractable study organisms in ecology, hybrid zone dynamics and speciation research. Many of these ecological model systems have now reached a point where data on species-specific behavior, morphology and ecology can be combined with large-scale molecular investigations. In an international collaborative framework we have formulated hypotheses to answer key questions related to reproductive isolation, local adaptation, genome evolution and conservation practices in a set of systems including recently to moderately diverged populations and species; wood white (Leptidea sp.) butterflies, the painted lady (Vanessa cardui), the clouded apollo (Parnassius mnemosyne) and Assmann's fritillary (Melitaea britomartis).

Publications
Recent publications
On the origin of an insular hybrid butterfly species
Part of Evolution, p. 510-524, 2025
- DOI for On the origin of an insular hybrid butterfly species
- Download full text (pdf) of On the origin of an insular hybrid butterfly species
Part of PNAS Nexus, 2025
- DOI for Isotope geolocation and population genomics in Vanessa cardui: Short- and long-distance migrants are genetically undifferentiated
- Download full text (pdf) of Isotope geolocation and population genomics in Vanessa cardui: Short- and long-distance migrants are genetically undifferentiated
Part of G3, 2025
- DOI for Divergence in expression of a singing-related neuroplasticity gene in the brains of 2 Ficedula flycatchers and their hybrids
- Download full text (pdf) of Divergence in expression of a singing-related neuroplasticity gene in the brains of 2 Ficedula flycatchers and their hybrids
Part of Genome Biology and Evolution, 2024
- DOI for A Chromosome-Level Genome Assembly and Annotation for the Clouded Apollo Butterfly (Parnassius mnemosyne): A Species of Global Conservation Concern
- Download full text (pdf) of A Chromosome-Level Genome Assembly and Annotation for the Clouded Apollo Butterfly (Parnassius mnemosyne): A Species of Global Conservation Concern
Meiotic drive against chromosome fusions in butterfly hybrids
Part of Chromosome Research, 2024
- DOI for Meiotic drive against chromosome fusions in butterfly hybrids
- Download full text (pdf) of Meiotic drive against chromosome fusions in butterfly hybrids
All publications
Articles in journal
On the origin of an insular hybrid butterfly species
Part of Evolution, p. 510-524, 2025
- DOI for On the origin of an insular hybrid butterfly species
- Download full text (pdf) of On the origin of an insular hybrid butterfly species
Part of PNAS Nexus, 2025
- DOI for Isotope geolocation and population genomics in Vanessa cardui: Short- and long-distance migrants are genetically undifferentiated
- Download full text (pdf) of Isotope geolocation and population genomics in Vanessa cardui: Short- and long-distance migrants are genetically undifferentiated
Part of G3, 2025
- DOI for Divergence in expression of a singing-related neuroplasticity gene in the brains of 2 Ficedula flycatchers and their hybrids
- Download full text (pdf) of Divergence in expression of a singing-related neuroplasticity gene in the brains of 2 Ficedula flycatchers and their hybrids
Part of Genome Biology and Evolution, 2024
- DOI for A Chromosome-Level Genome Assembly and Annotation for the Clouded Apollo Butterfly (Parnassius mnemosyne): A Species of Global Conservation Concern
- Download full text (pdf) of A Chromosome-Level Genome Assembly and Annotation for the Clouded Apollo Butterfly (Parnassius mnemosyne): A Species of Global Conservation Concern
Meiotic drive against chromosome fusions in butterfly hybrids
Part of Chromosome Research, 2024
- DOI for Meiotic drive against chromosome fusions in butterfly hybrids
- Download full text (pdf) of Meiotic drive against chromosome fusions in butterfly hybrids
Temporal dynamics of faster neo-Z evolution in butterflies
Part of Evolution, p. 1554-1567, 2024
- DOI for Temporal dynamics of faster neo-Z evolution in butterflies
- Download full text (pdf) of Temporal dynamics of faster neo-Z evolution in butterflies
Part of Chromosome Research, 2023
- DOI for High-density linkage maps and chromosome level genome assemblies unveil direction and frequency of extensive structural rearrangements in wood white butterflies (Leptidea spp.)
- Download full text (pdf) of High-density linkage maps and chromosome level genome assemblies unveil direction and frequency of extensive structural rearrangements in wood white butterflies (Leptidea spp.)
Part of Conservation Genetics, p. 305-314, 2023
- DOI for Whole genome re-sequencing uncovers significant population structure and low genetic diversity in the endangered clouded apollo (Parnasssius mnemosyne) in Sweden
- Download full text (pdf) of Whole genome re-sequencing uncovers significant population structure and low genetic diversity in the endangered clouded apollo (Parnasssius mnemosyne) in Sweden
The fine-scale recombination rate variation and associations with genomic features in a butterfly
Part of Genome Research, p. 810-823, 2023
- DOI for The fine-scale recombination rate variation and associations with genomic features in a butterfly
- Download full text (pdf) of The fine-scale recombination rate variation and associations with genomic features in a butterfly
Nascent evolution of recombination rate differences as a consequence of chromosomal rearrangements
Part of PLOS Genetics, 2023
- DOI for Nascent evolution of recombination rate differences as a consequence of chromosomal rearrangements
- Download full text (pdf) of Nascent evolution of recombination rate differences as a consequence of chromosomal rearrangements
Base composition, codon usage and patterns of gene sequence evolution in butterflies.
Part of Genome Biology and Evolution, 2023
- DOI for Base composition, codon usage and patterns of gene sequence evolution in butterflies.
- Download full text (pdf) of Base composition, codon usage and patterns of gene sequence evolution in butterflies.
Part of Molecular Ecology, p. 3513-3523, 2023
- DOI for Environmental stress during larval development induces DNA methylation shifts in the migratory painted lady butterfly (Vanessa cardui)
- Download full text (pdf) of Environmental stress during larval development induces DNA methylation shifts in the migratory painted lady butterfly (Vanessa cardui)
Migratory behaviour is positively associated with genetic diversity in butterflies
Part of Molecular Ecology, p. 560-574, 2023
- DOI for Migratory behaviour is positively associated with genetic diversity in butterflies
- Download full text (pdf) of Migratory behaviour is positively associated with genetic diversity in butterflies
Part of Genomics, 2022
- DOI for Linkage mapping and genome annotation give novel insights into gene family expansions and regional recombination rate variation in the painted lady (Vanessa cardui) butterfly
- Download full text (pdf) of Linkage mapping and genome annotation give novel insights into gene family expansions and regional recombination rate variation in the painted lady (Vanessa cardui) butterfly
Part of Genome Biology and Evolution, 2021
- DOI for The Effects of GC-Biased Gene Conversion on Patterns of Genetic Diversity among and across Butterfly Genomes
- Download full text (pdf) of The Effects of GC-Biased Gene Conversion on Patterns of Genetic Diversity among and across Butterfly Genomes
Part of Molecular Ecology, p. 499-516, 2021
- DOI for Host plant diet affects growth and induces altered gene expression and microbiome composition in the wood white (Leptidea sinapis) butterfly
- Download full text (pdf) of Host plant diet affects growth and induces altered gene expression and microbiome composition in the wood white (Leptidea sinapis) butterfly
Part of Genome Research, p. 1727-1739, 2020
- DOI for Tissue-specific patterns of regulatory changes underlying gene expression differences among Ficedula flycatchers and their naturally occurring F1 hybrids
- Download full text (pdf) of Tissue-specific patterns of regulatory changes underlying gene expression differences among Ficedula flycatchers and their naturally occurring F1 hybrids
Part of Genome Biology and Evolution, p. 2633-2652, 2019
Part of Genome Biology and Evolution, p. 2875-2886, 2019
- DOI for Dissecting the Effects of Selection and Mutation on Genetic Diversity in Three Wood White (Leptidea) Butterfly Species
- Download full text (pdf) of Dissecting the Effects of Selection and Mutation on Genetic Diversity in Three Wood White (Leptidea) Butterfly Species
Part of Molecular Ecology, p. 3756-3770, 2019
Part of Molecular Ecology, p. 935-948, 2018
Part of Genome Biology and Evolution, p. 2491-2505, 2017
- DOI for Rapid Increase in Genome Size as a Consequence of Transposable Element Hyperactivity in Wood-White (Leptidea) Butterflies
- Download full text (pdf) of Rapid Increase in Genome Size as a Consequence of Transposable Element Hyperactivity in Wood-White (Leptidea) Butterflies
Part of G3, p. 3983-3998, 2017
- DOI for Heterogeneous Patterns of Genetic Diversity and Differentiation in European and Siberian Chiffchaff (Phylloscopus collybita abietinus/P. tristis)
- Download full text (pdf) of Heterogeneous Patterns of Genetic Diversity and Differentiation in European and Siberian Chiffchaff (Phylloscopus collybita abietinus/P. tristis)
Part of Ecology and Evolution, p. 2169-2180, 2017
- DOI for Patterns of genetic, phenotypic, and acoustic variation across a chiffchaff (Phylloscopus collybita abietinus/tristis) hybrid zone
- Download full text (pdf) of Patterns of genetic, phenotypic, and acoustic variation across a chiffchaff (Phylloscopus collybita abietinus/tristis) hybrid zone
Part of Molecular Ecology, p. 1285-1305, 2017
Divergence in gene expression within and between two closely related flycatcher species
Part of Molecular Ecology, p. 2015-2028, 2016
- DOI for Divergence in gene expression within and between two closely related flycatcher species
- Download full text (pdf) of Divergence in gene expression within and between two closely related flycatcher species
Part of Molecular biology and evolution, p. 2716-2725, 2015
- DOI for Quantitative Mass Spectrometry Reveals Partial Translational Regulation for Dosage Compensation in Chicken
- Download full text (pdf) of Quantitative Mass Spectrometry Reveals Partial Translational Regulation for Dosage Compensation in Chicken
DNA barcodes highlight unique research models in European butterflies
Part of Genome, p. 212-212, 2015
Part of Molecular Ecology Resources, p. 1248-1260, 2014
- DOI for Estimation of linkage disequilibrium and interspecific gene flow in Ficedula flycatchers by a newly developed 50k single-nucleotide polymorphism array
- Download full text (pdf) of Estimation of linkage disequilibrium and interspecific gene flow in Ficedula flycatchers by a newly developed 50k single-nucleotide polymorphism array
Part of BMC Genomics, p. 1060, 2014
- DOI for Reconstruction of gross avian genome structure, organization and evolution suggests that the chicken lineage most closely resembles the dinosaur avian ancestor
- Download full text (pdf) of Reconstruction of gross avian genome structure, organization and evolution suggests that the chicken lineage most closely resembles the dinosaur avian ancestor
Part of BMC Genomics, 2014
Adaptive evolution in passerine birds
Part of Encyclopedia of Life Sciences, 2014
Assembly errors cause false tandem duplicate regions in the chicken (Gallus gallus) genome sequence
Part of Chromosoma, p. 165-168, 2014
Part of Biochemical Genetics, p. 38-51, 2014
Inferring the demographic history of European Ficedula flycatcher populations
Part of BMC Evolutionary Biology, p. 2, 2013
- DOI for Inferring the demographic history of European Ficedula flycatcher populations
- Download full text (pdf) of Inferring the demographic history of European Ficedula flycatcher populations
Part of Ecology and Evolution, p. 655-666, 2013
Y-Chromosome Analysis in Retuertas Horses
Part of PLOS ONE, 2013
- DOI for Y-Chromosome Analysis in Retuertas Horses
- Download full text (pdf) of Y-Chromosome Analysis in Retuertas Horses
Part of Molecular biology and evolution, p. 1046-1050, 2013
Part of Ecology and Evolution, 2012
The genomic landscape of species divergence in Ficedula flycatchers
Part of Nature, p. 756-760, 2012
Sex- and species-biased gene flow in a spotted eagle hybrid zone.
Part of BMC Evolutionary Biology, 2011
The recombination landscape of the zebra finch Taeniopygia guttata genome
Part of Genome Research, p. 485-495, 2010
Part of Nature, p. 757-762, 2010
Part of Molecular Ecology, p. 266-276, 2010
Molecular evolution of genes in avian genomes
Part of Genome Biology, 2010
Part of Evolution, p. 3461-3475, 2010
Part of Genome Research, p. 503-511, 2010
Part of Molecular Ecology, p. 3394-3405, 2010
Speciation genetics: current status and evolving approaches Introduction
Part of Philosophical Transactions of the Royal Society of London. Biological Sciences, p. 1717-1733, 2010
Phylogeographic structure and gene flow of Himalayan snowcock (Tetraogallus himalayensis)
Part of Animal Biology, p. 449-465, 2010
Part of Genetics, p. 1479-1495, 2008
Part of Molecular Ecology, p. 964-980, 2008
Substitution rate heterogeneity and the male mutation bias.
Part of Journal of Molecular Evolution, p. 226-33, 2006
Levels of linkage disequilibrium in a wild bird population
Part of Biology Letters, p. 435-438, 2006
Part of Genetics, p. 377-386, 2006
Part of Mol Biol Evol, p. 1992-9, 2005
Part of Nature, p. 695-716, 2004
Limited number of patrilines in horse domestication.
Part of Nature Genetics, 2004
Articles, review/survey
Part of Molecular Ecology, p. 4035-4058, 2014
- DOI for A high-density linkage map enables a second-generation collared flycatcher genome assembly and reveals the patterns of avian recombination rate variation and chromosomal evolution
- Download full text (pdf) of A high-density linkage map enables a second-generation collared flycatcher genome assembly and reveals the patterns of avian recombination rate variation and chromosomal evolution