Niclas Backström
Professor , Head of Program for Evolutionary Biology at Department of Ecology and Genetics; Evolutionary Biology
- Telephone:
- +46 18 471 64 15
- E-mail:
- niclas.backstrom@ebc.uu.se
- Visiting address:
- Evolutionsbiologiskt centrum
Norbyvägen 18D
752 36 UPPSALA - Postal address:
- Evolutionsbiologiskt centrum
Norbyvägen 18D
752 36 UPPSALA
- CV:
- Download CV
Short presentation
Characterizing the genetic basis of traits of importance for local adaptation and species recognition is a major aim for evolutionary biologists of today.
We use a combination of genetic mapping, population genetics and comparative genomics approaches to study the speciation process, the genetic basis of adaptive traits and patterns of genome evolution. We are primarily using natural populations of butterflies as study organisms.
Biography
- 2020 – Professor (Biology: Evolutionary Genomics), Department of Ecology and Genetics, Evolutionary Biology Program, Uppsala University.
- 2018 – 2020 Senior lecturer, (Associate Professor), Department of Ecology and Genetics, Evolutionary Biology Program, Uppsala University.
- 2017 – 2018 Associate senior lecturer, (Assistant Professor), Department of Ecology and Genetics, Evolutionary Biology Program, Uppsala University.
- 2017 Awarded Title of Docent in Biology with specialization in Evolutionary Genetics, Uppsala University
- 2014 – 2016 Assistant Professor, Department of Ecology and Genetics, Evolutionary Biology Program, Uppsala University. Funded by the Swedish Research Council.
- 2012 - 2013 Repatriation research fellow, Department of Ecology and Genetics, Evolutionary Biology Program, Uppsala University. Funded by the Swedish Research Council.
- 2009 - 2012 Postdoctoral research fellow, Department of Organismic and Evolutionary Biology, Museum of Comparative Zoology, Harvard University. Funded by the Swedish Research Council.
- 2005 - 2009 PhD in Evolutionary Genetics, Department of Ecology and Genetics, Evolutionary Biology Program, Uppsala University.
- 2000 - 2004 Master’s Degree (MSc) in Biology, Uppsala University
Research
Since the Modern Synthesis, when Darwin’s model of evolution by natural selection was combined with principles of chromosome inheritance and population genetic theory, it has been appreciated that genetic approaches are central for our understanding of local adaptation and the forces that drive population differentiation and speciation. However, little is known about the underlying mechanisms.
Examples of core questions that still are largely unresolved are: What genetic elements underlie adaptations and population differentiation and how are they distributed over the genome? How many loci are involved and what proportional effect does each locus have? How important is epistasis and pleiotropy in general and in specific cases? What are the causes and consequences of molecular factors like mutation, recombination, gene conversion and chromosome rearrangements? Are functional changes the result of expression differences or structural changes?
Our research aims at understanding the genetic underpinnings of local adaptation, population differentiation and speciation and to quantify how variation in karyotype structure and recombination rate affect the genome and the potential for adaptation. We address these questions using both classical genetic methods and new genomic tools.
Birds and butterflies demonstrate a copious diversity in phenotypic traits and adaptations. They are widespread, generally abundant and often eye-catching. As a result, birds and butterflies have for long been tractable study organisms in ecology, hybrid zone dynamics and speciation research. Many of these ecological model systems have now reached a point where data on species-specific behavior, morphology and ecology can be combined with large-scale molecular investigations. In an international collaborative framework we have formulated hypotheses to answer key questions related to reproductive isolation, local adaptation, genome evolution and conservation practices in a set of systems including recently to moderately diverged populations and species; wood white (Leptidea sp.) butterflies, the painted lady (Vanessa cardui), the clouded apollo (Parnassius mnemosyne) and Assmann's fritillary (Melitaea britomartis).

Publications
Recent publications
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An Equatorial Hemispheric Barrier Shapes the Diversification of Migratory Belenois Butterflies
Part of Molecular Ecology, 2026
- DOI for An Equatorial Hemispheric Barrier Shapes the Diversification of Migratory Belenois Butterflies
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Resource Availability Modulates Gene Expression Across Life Stages in a Migratory Butterfly
Part of Molecular Ecology, 2026
- DOI for Resource Availability Modulates Gene Expression Across Life Stages in a Migratory Butterfly
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Evolution of Hybrid Inviability Associated With Chromosome Fusions
Part of Molecular Ecology, 2025
- DOI for Evolution of Hybrid Inviability Associated With Chromosome Fusions
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A north-south hemispheric migratory divide in the butterfly Vanessa cardui
Part of Nature Communications, 2025
- DOI for A north-south hemispheric migratory divide in the butterfly Vanessa cardui
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Part of Molecular Ecology, 2025
- DOI for Trans-Atlantic Dispersal and Introgression Explain Holarctic Disjunct Distributions in Vanessa Butterflies
- Download full text (pdf) of Trans-Atlantic Dispersal and Introgression Explain Holarctic Disjunct Distributions in Vanessa Butterflies
All publications
Articles in journal
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An Equatorial Hemispheric Barrier Shapes the Diversification of Migratory Belenois Butterflies
Part of Molecular Ecology, 2026
- DOI for An Equatorial Hemispheric Barrier Shapes the Diversification of Migratory Belenois Butterflies
- Download full text (pdf) of An Equatorial Hemispheric Barrier Shapes the Diversification of Migratory Belenois Butterflies
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Resource Availability Modulates Gene Expression Across Life Stages in a Migratory Butterfly
Part of Molecular Ecology, 2026
- DOI for Resource Availability Modulates Gene Expression Across Life Stages in a Migratory Butterfly
- Download full text (pdf) of Resource Availability Modulates Gene Expression Across Life Stages in a Migratory Butterfly
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Evolution of Hybrid Inviability Associated With Chromosome Fusions
Part of Molecular Ecology, 2025
- DOI for Evolution of Hybrid Inviability Associated With Chromosome Fusions
- Download full text (pdf) of Evolution of Hybrid Inviability Associated With Chromosome Fusions
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A north-south hemispheric migratory divide in the butterfly Vanessa cardui
Part of Nature Communications, 2025
- DOI for A north-south hemispheric migratory divide in the butterfly Vanessa cardui
- Download full text (pdf) of A north-south hemispheric migratory divide in the butterfly Vanessa cardui
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Part of Molecular Ecology, 2025
- DOI for Trans-Atlantic Dispersal and Introgression Explain Holarctic Disjunct Distributions in Vanessa Butterflies
- Download full text (pdf) of Trans-Atlantic Dispersal and Introgression Explain Holarctic Disjunct Distributions in Vanessa Butterflies
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On the origin of an insular hybrid butterfly species
Part of Evolution, p. 510-524, 2025
- DOI for On the origin of an insular hybrid butterfly species
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Part of PNAS Nexus, 2025
- DOI for Isotope geolocation and population genomics in Vanessa cardui: Short- and long-distance migrants are genetically undifferentiated
- Download full text (pdf) of Isotope geolocation and population genomics in Vanessa cardui: Short- and long-distance migrants are genetically undifferentiated
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Part of G3, 2025
- DOI for Divergence in expression of a singing-related neuroplasticity gene in the brains of 2 Ficedula flycatchers and their hybrids
- Download full text (pdf) of Divergence in expression of a singing-related neuroplasticity gene in the brains of 2 Ficedula flycatchers and their hybrids
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Part of Genome Biology and Evolution, 2024
- DOI for A Chromosome-Level Genome Assembly and Annotation for the Clouded Apollo Butterfly (Parnassius mnemosyne): A Species of Global Conservation Concern
- Download full text (pdf) of A Chromosome-Level Genome Assembly and Annotation for the Clouded Apollo Butterfly (Parnassius mnemosyne): A Species of Global Conservation Concern
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Meiotic drive against chromosome fusions in butterfly hybrids
Part of Chromosome Research, 2024
- DOI for Meiotic drive against chromosome fusions in butterfly hybrids
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Temporal dynamics of faster neo-Z evolution in butterflies
Part of Evolution, p. 1554-1567, 2024
- DOI for Temporal dynamics of faster neo-Z evolution in butterflies
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The fine-scale recombination rate variation and associations with genomic features in a butterfly
Part of Genome Research, p. 810-823, 2023
- DOI for The fine-scale recombination rate variation and associations with genomic features in a butterfly
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Part of Chromosome Research, 2023
- DOI for High-density linkage maps and chromosome level genome assemblies unveil direction and frequency of extensive structural rearrangements in wood white butterflies (Leptidea spp.)
- Download full text (pdf) of High-density linkage maps and chromosome level genome assemblies unveil direction and frequency of extensive structural rearrangements in wood white butterflies (Leptidea spp.)
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Part of Conservation Genetics, p. 305-314, 2023
- DOI for Whole genome re-sequencing uncovers significant population structure and low genetic diversity in the endangered clouded apollo (Parnasssius mnemosyne) in Sweden
- Download full text (pdf) of Whole genome re-sequencing uncovers significant population structure and low genetic diversity in the endangered clouded apollo (Parnasssius mnemosyne) in Sweden
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Nascent evolution of recombination rate differences as a consequence of chromosomal rearrangements
Part of PLOS Genetics, 2023
- DOI for Nascent evolution of recombination rate differences as a consequence of chromosomal rearrangements
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Base composition, codon usage and patterns of gene sequence evolution in butterflies.
Part of Genome Biology and Evolution, 2023
- DOI for Base composition, codon usage and patterns of gene sequence evolution in butterflies.
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Part of Molecular Ecology, p. 3513-3523, 2023
- DOI for Environmental stress during larval development induces DNA methylation shifts in the migratory painted lady butterfly (Vanessa cardui)
- Download full text (pdf) of Environmental stress during larval development induces DNA methylation shifts in the migratory painted lady butterfly (Vanessa cardui)
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Migratory behaviour is positively associated with genetic diversity in butterflies
Part of Molecular Ecology, p. 560-574, 2023
- DOI for Migratory behaviour is positively associated with genetic diversity in butterflies
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Part of Genomics, 2022
- DOI for Linkage mapping and genome annotation give novel insights into gene family expansions and regional recombination rate variation in the painted lady (Vanessa cardui) butterfly
- Download full text (pdf) of Linkage mapping and genome annotation give novel insights into gene family expansions and regional recombination rate variation in the painted lady (Vanessa cardui) butterfly
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Part of Genome Biology and Evolution, 2021
- DOI for The Effects of GC-Biased Gene Conversion on Patterns of Genetic Diversity among and across Butterfly Genomes
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Part of Molecular Ecology, p. 499-516, 2021
- DOI for Host plant diet affects growth and induces altered gene expression and microbiome composition in the wood white (Leptidea sinapis) butterfly
- Download full text (pdf) of Host plant diet affects growth and induces altered gene expression and microbiome composition in the wood white (Leptidea sinapis) butterfly
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Part of Genome Research, p. 1727-1739, 2020
- DOI for Tissue-specific patterns of regulatory changes underlying gene expression differences among Ficedula flycatchers and their naturally occurring F1 hybrids
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Part of Genome Biology and Evolution, p. 2633-2652, 2019
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Part of Molecular Ecology, p. 3756-3770, 2019
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Part of Genome Biology and Evolution, p. 2875-2886, 2019
- DOI for Dissecting the Effects of Selection and Mutation on Genetic Diversity in Three Wood White (Leptidea) Butterfly Species
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Part of Molecular Ecology, p. 935-948, 2018
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Part of Genome Biology and Evolution, p. 2491-2505, 2017
- DOI for Rapid Increase in Genome Size as a Consequence of Transposable Element Hyperactivity in Wood-White (Leptidea) Butterflies
- Download full text (pdf) of Rapid Increase in Genome Size as a Consequence of Transposable Element Hyperactivity in Wood-White (Leptidea) Butterflies
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Part of Ecology and Evolution, p. 2169-2180, 2017
- DOI for Patterns of genetic, phenotypic, and acoustic variation across a chiffchaff (Phylloscopus collybita abietinus/tristis) hybrid zone
- Download full text (pdf) of Patterns of genetic, phenotypic, and acoustic variation across a chiffchaff (Phylloscopus collybita abietinus/tristis) hybrid zone
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Part of G3, p. 3983-3998, 2017
- DOI for Heterogeneous Patterns of Genetic Diversity and Differentiation in European and Siberian Chiffchaff (Phylloscopus collybita abietinus/P. tristis)
- Download full text (pdf) of Heterogeneous Patterns of Genetic Diversity and Differentiation in European and Siberian Chiffchaff (Phylloscopus collybita abietinus/P. tristis)
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Part of Molecular Ecology, p. 1285-1305, 2017
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Divergence in gene expression within and between two closely related flycatcher species
Part of Molecular Ecology, p. 2015-2028, 2016
- DOI for Divergence in gene expression within and between two closely related flycatcher species
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DNA barcodes highlight unique research models in European butterflies
Part of Genome, p. 212-212, 2015
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Part of Molecular biology and evolution, p. 2716-2725, 2015
- DOI for Quantitative Mass Spectrometry Reveals Partial Translational Regulation for Dosage Compensation in Chicken
- Download full text (pdf) of Quantitative Mass Spectrometry Reveals Partial Translational Regulation for Dosage Compensation in Chicken
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Part of Molecular Ecology Resources, p. 1248-1260, 2014
- DOI for Estimation of linkage disequilibrium and interspecific gene flow in Ficedula flycatchers by a newly developed 50k single-nucleotide polymorphism array
- Download full text (pdf) of Estimation of linkage disequilibrium and interspecific gene flow in Ficedula flycatchers by a newly developed 50k single-nucleotide polymorphism array
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Part of BMC Genomics, p. 1060, 2014
- DOI for Reconstruction of gross avian genome structure, organization and evolution suggests that the chicken lineage most closely resembles the dinosaur avian ancestor
- Download full text (pdf) of Reconstruction of gross avian genome structure, organization and evolution suggests that the chicken lineage most closely resembles the dinosaur avian ancestor
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Part of BMC Genomics, 2014
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Adaptive evolution in passerine birds
Part of Encyclopedia of Life Sciences, 2014
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Assembly errors cause false tandem duplicate regions in the chicken (Gallus gallus) genome sequence
Part of Chromosoma, p. 165-168, 2014
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Part of Biochemical Genetics, p. 38-51, 2014
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Part of Ecology and Evolution, p. 655-666, 2013
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Inferring the demographic history of European Ficedula flycatcher populations
Part of BMC Evolutionary Biology, p. 2, 2013
- DOI for Inferring the demographic history of European Ficedula flycatcher populations
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Y-Chromosome Analysis in Retuertas Horses
Part of PLOS ONE, 2013
- DOI for Y-Chromosome Analysis in Retuertas Horses
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Part of Molecular biology and evolution, p. 1046-1050, 2013
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Part of Ecology and Evolution, 2012
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The genomic landscape of species divergence in Ficedula flycatchers
Part of Nature, p. 756-760, 2012
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Sex- and species-biased gene flow in a spotted eagle hybrid zone.
Part of BMC Evolutionary Biology, 2011
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The recombination landscape of the zebra finch Taeniopygia guttata genome
Part of Genome Research, p. 485-495, 2010
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Part of Nature, p. 757-762, 2010
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Part of Molecular Ecology, p. 266-276, 2010
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Molecular evolution of genes in avian genomes
Part of Genome Biology, 2010
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Part of Genome Research, p. 503-511, 2010
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Part of Molecular Ecology, p. 3394-3405, 2010
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Part of Evolution, p. 3461-3475, 2010
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Speciation genetics: current status and evolving approaches Introduction
Part of Philosophical Transactions of the Royal Society of London. Biological Sciences, p. 1717-1733, 2010
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Phylogeographic structure and gene flow of Himalayan snowcock (Tetraogallus himalayensis)
Part of Animal Biology, p. 449-465, 2010
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Part of Genetics, p. 1479-1495, 2008
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Part of Molecular Ecology, p. 964-980, 2008
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Substitution rate heterogeneity and the male mutation bias.
Part of Journal of Molecular Evolution, p. 226-33, 2006
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Levels of linkage disequilibrium in a wild bird population
Part of Biology Letters, p. 435-438, 2006
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Part of Genetics, p. 377-386, 2006
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Part of Mol Biol Evol, p. 1992-9, 2005
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Part of Nature, p. 695-716, 2004
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Limited number of patrilines in horse domestication.
Part of Nature Genetics, 2004
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Articles, review/survey
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Part of Molecular Ecology, p. 4035-4058, 2014
- DOI for A high-density linkage map enables a second-generation collared flycatcher genome assembly and reveals the patterns of avian recombination rate variation and chromosomal evolution
- Download full text (pdf) of A high-density linkage map enables a second-generation collared flycatcher genome assembly and reveals the patterns of avian recombination rate variation and chromosomal evolution