Björn Nystedt

Genome sequences of six clinical isolates of Candida parapsilosis exhibiting different degrees and temporal regulation of biofilm formation

Shafeeq, Sulman; Pannanusorn, Srisuda; Dainat, Jacques; Dadvar, Ali et al.

Part of Microbiology Resource Announcements, 2025

• DOI for Genome sequences of six clinical isolates of Candida parapsilosis exhibiting different degrees and temporal regulation of biofilm formation
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Mettl15-Mettl17 modulates the transition from early to late pre-mitoribosome

Zgadzay, Yury; Mirabello, Claudio; Wanes, George; Panek, Tomas et al.

Part of Structure, p. 1904-1915000, 2025

• DOI for Mettl15-Mettl17 modulates the transition from early to late pre-mitoribosome
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The spatiotemporal distribution of human pathogens in ancient Eurasia

Sikora, Martin; Canteri, Elisabetta; Fernandez-Guerra, Antonio; Oskolkov, Nikolay et al.

Part of Nature, 2025

• DOI for The spatiotemporal distribution of human pathogens in ancient Eurasia
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Unmasking AlphaFold to integrate experiments and predictions in multimeric complexes

Mirabello, Claudio; Wallner, Bjorn; Nystedt, Björn; Azinas, Stavros et al.

Part of Nature Communications, 2024

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Whole-genome resequencing facilitates the development of a 50K single nucleotide polymorphism genotyping array for Scots pine (Pinus sylvestris L.) and its transferability to other pine species

Barcala, Maximiliano Estravis; van der Valk, Tom; Chen, Zhiqiang; Funda, Tomas et al.

Part of The Plant Journal, p. 944-955, 2024

• DOI for Whole-genome resequencing facilitates the development of a 50K single nucleotide polymorphism genotyping array for Scots pine (Pinus sylvestris L.) and its transferability to other pine species
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Genome sequences of six clinical isolates of Candida parapsilosis exhibiting different degrees and temporal regulation of biofilm formation

Shafeeq, Sulman; Pannanusorn, Srisuda; Dainat, Jacques; Dadvar, Ali et al.

Part of Microbiology Resource Announcements, 2025

• DOI for Genome sequences of six clinical isolates of Candida parapsilosis exhibiting different degrees and temporal regulation of biofilm formation
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Mettl15-Mettl17 modulates the transition from early to late pre-mitoribosome

Zgadzay, Yury; Mirabello, Claudio; Wanes, George; Panek, Tomas et al.

Part of Structure, p. 1904-1915000, 2025

• DOI for Mettl15-Mettl17 modulates the transition from early to late pre-mitoribosome
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The spatiotemporal distribution of human pathogens in ancient Eurasia

Sikora, Martin; Canteri, Elisabetta; Fernandez-Guerra, Antonio; Oskolkov, Nikolay et al.

Part of Nature, 2025

• DOI for The spatiotemporal distribution of human pathogens in ancient Eurasia
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Unmasking AlphaFold to integrate experiments and predictions in multimeric complexes

Mirabello, Claudio; Wallner, Bjorn; Nystedt, Björn; Azinas, Stavros et al.

Part of Nature Communications, 2024

• DOI for Unmasking AlphaFold to integrate experiments and predictions in multimeric complexes
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Whole-genome resequencing facilitates the development of a 50K single nucleotide polymorphism genotyping array for Scots pine (Pinus sylvestris L.) and its transferability to other pine species

Barcala, Maximiliano Estravis; van der Valk, Tom; Chen, Zhiqiang; Funda, Tomas et al.

Part of The Plant Journal, p. 944-955, 2024

• DOI for Whole-genome resequencing facilitates the development of a 50K single nucleotide polymorphism genotyping array for Scots pine (Pinus sylvestris L.) and its transferability to other pine species
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Proteogenomics decodes the evolution of human ipsilateral breast cancer

De Marchi, Tommaso; Pyl, Paul Theodor; Sjöström, Martin; Reinsbach, Susanne Erika et al.

Part of Communications Biology, 2023

• DOI for Proteogenomics decodes the evolution of human ipsilateral breast cancer
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Contribution of rare whole-genome sequencing variants to plasma protein levels and the missing heritability

Kierczak, Marcin; Rafati, Nima; Höglund, Julia; Gourlé, Hadrien et al.

Part of Nature Communications, 2022

• DOI for Contribution of rare whole-genome sequencing variants to plasma protein levels and the missing heritability
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Environmentally induced DNA methylation is inherited across generations in an aquatic keystone species

Feiner, Nathalie; Radersma, Reinder; Vasquez, Louella; Ringner, Markus et al.

Part of iScience, 2022

• DOI for Environmentally induced DNA methylation is inherited across generations in an aquatic keystone species
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GenErode: a bioinformatics pipeline to investigate genome erosion in endangered and extinct species

Kutschera, Verena E.; Kierczak, Marcin; van der Valk, Tom; von Seth, Johanna et al.

Part of BMC Bioinformatics, 2022

• DOI for GenErode: a bioinformatics pipeline to investigate genome erosion in endangered and extinct species
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Genomic analyses of the Linum distyly supergene reveal convergent evolution at the molecular level

Gutierrez-Valencia, Juanita; Fracassetti, Marco; Berdan, Emma L.; Bunikis, Ignas et al.

Part of Current Biology, p. 4360-4371000000, 2022

• DOI for Genomic analyses of the Linum distyly supergene reveal convergent evolution at the molecular level
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High-throughput muscle fiber typing from RNA sequencing data

Oskolkov, Nikolay; Santel, Malgorzata; Parikh, Hemang M.; Ekstrom, Ola et al.

Part of Skeletal Muscle, 2022

• DOI for High-throughput muscle fiber typing from RNA sequencing data
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Genomic Characterization of the Barnacle Balanus improvisus Reveals Extreme Nucleotide Diversity in Coding Regions

Alm Rosenblad, Magnus; Abramova, Anna; Lind, Ulrika; Ólason, Páll I. et al.

Part of Marine Biotechnology, p. 402-416, 2021

• DOI for Genomic Characterization of the Barnacle Balanus improvisus Reveals Extreme Nucleotide Diversity in Coding Regions
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Avian Neo-Sex Chromosomes Reveal Dynamics of Recombination Suppression and W Degeneration

Sigeman, Hanna; Strandh, Maria; Proux-Wera, Estelle; Kutschera, Verena E. et al.

Part of Molecular biology and evolution, p. 5275-5291, 2021

• DOI for Avian Neo-Sex Chromosomes Reveal Dynamics of Recombination Suppression and W Degeneration
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Sarek: A portable workflow for whole-genome sequencing analysis of germline and somatic variants

Garcia, Maxime; Juhos, Szilveszter; Larsson, Malin; Olason, Pall I. et al.

Part of F1000 Research, 2020

• DOI for Sarek: A portable workflow for whole-genome sequencing analysis of germline and somatic variants
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Increased burden of ultra-rare structural variants localizing to boundaries of topologically associated domains in schizophrenia

Halvorsen, Matthew; Huh, Ruth; Oskolkov, Nikolay; Wen, Jia et al.

Part of Nature Communications, 2020

• DOI for Increased burden of ultra-rare structural variants localizing to boundaries of topologically associated domains in schizophrenia
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Genome assembly of the basket willow, Salix viminalis, reveals earliest stages of sex chromosome expansion

Almeida, Pedro; Proux-Wera, Estelle; Churcher, Allison; Soler, Lucile et al.

Part of BMC Biology, 2020

• DOI for Genome assembly of the basket willow, Salix viminalis, reveals earliest stages of sex chromosome expansion
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The genomic footprint of sexual conflict

Sayadi, Ahmed; Martínez Barrio, Álvaro; Immonen, Elina; Dainat, Jacques et al.

Part of Nature Ecology & Evolution, p. 1725-1730, 2019

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A major locus controls local adaptation and adaptive life history variation in a perennial plant

Wang, Jing; Ding, Jihua; Tan, Biyue; Robinson, Kathryn M. et al.

Part of Genome Biology, 2018

• DOI for A major locus controls local adaptation and adaptive life history variation in a perennial plant

Functional and evolutionary genomic inferences in Populus through genome and population sequencing of American and European aspen

Lin, Yao-Cheng; Wang, Jing; Delhomme, Nicolas; Schiffthaler, Bastian et al.

Part of Proceedings of the National Academy of Sciences of the United States of America, 2018

• DOI for Functional and evolutionary genomic inferences in Populus through genome and population sequencing of American and European aspen
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Proteogenomics produces comprehensive and highly accurate protein-coding gene annotation in a complete genome assembly of Malassezia sympodialis

Zhu, Yafeng; Engstrom, Par G.; Tellgren-Roth, Christian; Baudo, Charles D. et al.

Part of Nucleic Acids Research, p. 2629-2643, 2017

• DOI for Proteogenomics produces comprehensive and highly accurate protein-coding gene annotation in a complete genome assembly of Malassezia sympodialis
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SweGen: a whole-genome data resource of genetic variability in a cross-section of the Swedish population

Ameur, Adam; Dahlberg, Johan; Olason, Pall; Vezzi, Francesco et al.

Part of European Journal of Human Genetics, p. 1253-1260, 2017

• DOI for SweGen: a whole-genome data resource of genetic variability in a cross-section of the Swedish population
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Cloche is a bHLH-PAS transcription factor that drives haemato-vascular specification

Reischauer, Sven; Stone, Oliver A.; Villasenor, Alethia; Chi, Neil et al.

Part of Nature, p. 294-+, 2016

• DOI for Cloche is a bHLH-PAS transcription factor that drives haemato-vascular specification

The genetic basis for ecological adaptation of the Atlantic herring revealed by genome sequencing

Martínez Barrio, Álvaro; Lamichhaney, Sangeet; Fan, Guangyi; Rafati, Nima et al.

Part of eLIFE, 2016

• DOI for The genetic basis for ecological adaptation of the Atlantic herring revealed by genome sequencing
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The Chironomus tentans genome sequence and the organization of the Balbiani ring genes

Kutsenko, Alexey; Svensson, Thomas; Nystedt, Björn; Lundeberg, Joakim et al.

Part of BMC Genomics, p. 819, 2014

• DOI for The Chironomus tentans genome sequence and the organization of the Balbiani ring genes
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A Gene Transfer Agent and a Dynamic Repertoire of Secretion Systems Hold the Keys to the Explosive Radiation of the Emerging Pathogen Bartonella

Guy, Lionel; Nystedt, Björn; Toft, Christina; Zaremba-Niedzwiedzka, Katarzyna et al.

Part of PLOS Genetics, 2013

• DOI for A Gene Transfer Agent and a Dynamic Repertoire of Secretion Systems Hold the Keys to the Explosive Radiation of the Emerging Pathogen Bartonella
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Amplified fragment length polymorphism (AFLP) analysis of closely related wild and captive tsetse fly (Glossina morsitans morsitans) populations

Lall, Gurdeep K.; Darby, Alistair C.; Nystedt, Björn; MacLeod, Ewan T. et al.

Part of Parasites & Vectors, p. 47, 2010

• DOI for Amplified fragment length polymorphism (AFLP) analysis of closely related wild and captive tsetse fly (Glossina morsitans morsitans) populations

Computational Resources in Infectious Disease: Limitations and Challenges

Berglund, Eva C.; Nystedt, Björn; Andersson, Siv G. E.

Part of PloS Computational Biology, 2009

• DOI for Computational Resources in Infectious Disease: Limitations and Challenges

Endosymbiont gene functions impaired and rescued by polymerase infidelity at poly(A) tracts

Tamas, Ivica; Wernegreen, Jennifer J; Nystedt, Björn; Kauppinen, Seth N et al.

Part of Proceedings of the National Academy of Sciences of the United States of America, p. 14934-14939, 2008

• DOI for Endosymbiont gene functions impaired and rescued by polymerase infidelity at poly(A) tracts

Diversifying Selection and Concerted Evolution of a Type IV Secretion System in Bartonella

Nystedt, Björn; Frank, Carolin; Thollesson, Mikael; Andersson, Siv

Part of Molecular biology and evolution, p. 287-300, 2008

• DOI for Diversifying Selection and Concerted Evolution of a Type IV Secretion System in Bartonella

Protein evolutionary rates correlate with expression independently of synonymous substitutions in Helicobacter pylori

Sällström, Björn; Arnaout, Ramy A.; Davids, Wagied; Bjelkmar, Pär et al.

Part of Journal of Molecular Evolution, p. 600-614, 2006

• DOI for Protein evolutionary rates correlate with expression independently of synonymous substitutions in Helicobacter pylori

Modeling drug- and system-related changes in body temperature: application to clomethiazole-induced hypothermia, long-lasting tolerance development, and circadian rhythm in rats

Visser, Sandra A. G.; Sällström, Björn; Forsberg, Tomas; Peletier, Lambertus A. et al.

Part of Journal of Pharmacology and Experimental Therapeutics, p. 209-219, 2006

• DOI for Modeling drug- and system-related changes in body temperature: application to clomethiazole-induced hypothermia, long-lasting tolerance development, and circadian rhythm in rats

A Pharmacodynamic Turnover Model Capturing Asymmetric Circadian Baselines of Body Temperature, Heart Rate and Blood Pressure in Rats: Challenges in Terms of Tolerance and Animal-handling Effects

Sällström, Björn; Visser, Sandra A G; Forsberg, Tomas; Peletier, Lambertus A et al.

Part of Journal of Pharmacokinetics and Pharmacodynamics, p. 835-859, 2005

• DOI for A Pharmacodynamic Turnover Model Capturing Asymmetric Circadian Baselines of Body Temperature, Heart Rate and Blood Pressure in Rats: Challenges in Terms of Tolerance and Animal-handling Effects

Genome reduction in the alpha-Proteobacteria

Sällström, Björn; Andersson, Siv

Part of Current Opinion in Microbiology, p. 579-585, 2005

• DOI for Genome reduction in the alpha-Proteobacteria

Genome reduction in the alpha-Proteobacteria

Sällström, Björn; Andersson, Siv G.E.

Part of Current Opinion in Microbiology, p. 579-585, 2005

• DOI for Genome reduction in the alpha-Proteobacteria

Evolutionary Processes and Genome Dynamics in Host-Adapted Bacteria

Nystedt, Björn

2009

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Evolution of Host Adaptation Systems in  the Mammalian Blood Specialist Bartonella

Nystedt, Björn; Guy, Lionel; Berglund, Eva; Bjursell, Magnus et al.

Low-coverage pyrosequencing reveals recombination and run-off replication in Bartonella henselae strains

Guy, Lionel; Nystedt, Björn; Sun, Yu; Berglund, Eva C. et al.