Daniel Larsson

23S rRNA modifications stimulate catalytic activity and prevent the formation of alternative structures

Larsson, Daniel; Liiv, Aivar; Ero, Rya; Remme, Jaanus et al.

Part of Nucleic Acids Research, 2026

• DOI for 23S rRNA modifications stimulate catalytic activity and prevent the formation of alternative structures
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Doublet decoding of tRNA^Ser3 demonstrates plasticity of ribosomal decoding center

Krishnaswamy, Shruthi; Akbar, Shirin; Larsson, Daniel S.D.; Chen, Yang et al.

Part of Nature Communications, 2025

• DOI for Doublet decoding of tRNA^Ser3 demonstrates plasticity of ribosomal decoding center
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Structural mechanism of FusB-mediated rescue from fusidic acid inhibition of protein synthesis

González-López, Adrián; Ge, Xueliang; Larsson, Daniel; Sihlbom Wallem, Carina et al.

Part of Nature Communications, 2025

• DOI for Structural mechanism of FusB-mediated rescue from fusidic acid inhibition of protein synthesis
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Structures of the Staphylococcus aureus ribosome inhibited by fusidic acid and fusidic acid cyclopentane

González-López, Adrián; Larsson, Daniel S. D.; Koripella, Ravi Kiran; Cain, Brett N. et al.

Part of Scientific Reports, 2024

• DOI for Structures of the Staphylococcus aureus ribosome inhibited by fusidic acid and fusidic acid cyclopentane
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Structural Consequences of Deproteinating the 50S Ribosome

Larsson, Daniel S D; Kanchugal Puttaswamy, Sandesh; Selmer, Maria

Part of Biomolecules, 2022

• DOI for Structural Consequences of Deproteinating the 50S Ribosome
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23S rRNA modifications stimulate catalytic activity and prevent the formation of alternative structures

Larsson, Daniel; Liiv, Aivar; Ero, Rya; Remme, Jaanus et al.

Part of Nucleic Acids Research, 2026

• DOI for 23S rRNA modifications stimulate catalytic activity and prevent the formation of alternative structures
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Doublet decoding of tRNA^Ser3 demonstrates plasticity of ribosomal decoding center

Krishnaswamy, Shruthi; Akbar, Shirin; Larsson, Daniel S.D.; Chen, Yang et al.

Part of Nature Communications, 2025

• DOI for Doublet decoding of tRNA^Ser3 demonstrates plasticity of ribosomal decoding center
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Structural mechanism of FusB-mediated rescue from fusidic acid inhibition of protein synthesis

González-López, Adrián; Ge, Xueliang; Larsson, Daniel; Sihlbom Wallem, Carina et al.

Part of Nature Communications, 2025

• DOI for Structural mechanism of FusB-mediated rescue from fusidic acid inhibition of protein synthesis
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Structures of the Staphylococcus aureus ribosome inhibited by fusidic acid and fusidic acid cyclopentane

González-López, Adrián; Larsson, Daniel S. D.; Koripella, Ravi Kiran; Cain, Brett N. et al.

Part of Scientific Reports, 2024

• DOI for Structures of the Staphylococcus aureus ribosome inhibited by fusidic acid and fusidic acid cyclopentane
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Structural Consequences of Deproteinating the 50S Ribosome

Larsson, Daniel S D; Kanchugal Puttaswamy, Sandesh; Selmer, Maria

Part of Biomolecules, 2022

• DOI for Structural Consequences of Deproteinating the 50S Ribosome
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Acquired Functional Capsid Structures in Metazoan Totivirus-like dsRNA Virus

Okamoto, Kenta; Ferreira, Ricardo J.; Larsson, Daniel S D; Maia, Filipe R.N.C. et al.

Part of Structure, p. 888-+, 2020

• DOI for Acquired Functional Capsid Structures in Metazoan Totivirus-like dsRNA Virus

Nanometre-sized droplets from a gas dynamic virtual nozzle

Mühlig, Kerstin; Ganan-Calvo, Alfonso M.; Andreasson, Jakob; Larsson, Daniel S D et al.

Part of Journal of applied crystallography, p. 800-808, 2019

• DOI for Nanometre-sized droplets from a gas dynamic virtual nozzle

Electrospray sample injection for single-particle imaging with x-ray lasers

Bielecki, Johan; Hantke, Max F.; Daurer, Benedikt J.; Reddy, Hemanth K. N. et al.

Part of Science Advances, 2019

• DOI for Electrospray sample injection for single-particle imaging with x-ray lasers

Cryo-EM structure of a Marseilleviridae virus particle reveals a large internal microassembly

Okamoto, Kenta; Miyazaki, Naoyuki; Reddy, Hemanth K.N.; Hantke, Max F et al.

Part of Virology, p. 239-245, 2018

• DOI for Cryo-EM structure of a Marseilleviridae virus particle reveals a large internal microassembly

Femtosecond X-ray Fourier holography imaging of free-flying nanoparticles

Gorkhover, Tais; Ulmer, Anatoli; Ferguson, Ken; Bucher, Max et al.

Part of Nature Photonics, p. 150-153, 2018

• DOI for Femtosecond X-ray Fourier holography imaging of free-flying nanoparticles

Considerations for three-dimensional image reconstruction from experimental data in coherent diffractive imaging

Lundholm, Ida V.; Sellberg, Jonas A.; Ekeberg, Tomas; Hantke, Max F. et al.

Part of IUCrJ, p. 531-541, 2018

• DOI for Considerations for three-dimensional image reconstruction from experimental data in coherent diffractive imaging

Rayleigh-scattering microscopy for tracking and sizing nanoparticles in focused aerosol beams

Hantke, Max Felix; Bielecki, Johan; Kulyk, Olena; Westphal, Daniel et al.

Part of IUCrJ, p. 673-680, 2018

• DOI for Rayleigh-scattering microscopy for tracking and sizing nanoparticles in focused aerosol beams
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A statistical approach to detect protein complexes at X-ray free electron laser facilities

Pietrini, Alberto; Bielecki, Johan; Timneanu, Nicusor; Hantke, Max F. et al.

Part of Communications Physics, 2018

• DOI for A statistical approach to detect protein complexes at X-ray free electron laser facilities

Coherent soft X-ray diffraction imaging of Coliphage PR772 at the Linac coherent light source

Reddy, Hemanth K. N.; Yoon, Chun Hong; Aquila, Andrew; Awel, Salah et al.

Part of Scientific Data, 2017

• DOI for Coherent soft X-ray diffraction imaging of Coliphage PR772 at the Linac coherent light source

Experimental strategies for imaging bioparticles with femtosecond hard X-ray pulses

Daurer, Benedikt J.; Okamoto, Kenta; Bielecki, Johan; Maia, Filipe R. N. C. et al.

Part of IUCrJ, p. 251-262, 2017

• DOI for Experimental strategies for imaging bioparticles with femtosecond hard X-ray pulses

Coherent diffraction of single Rice Dwarf virus particles using hard X-rays at the Linac Coherent Light Source

Munke, Anna; Andreasson, Jakob; Aquila, Andrew; Awel, Salah et al.

Part of Scientific Data, 2016

• DOI for Coherent diffraction of single Rice Dwarf virus particles using hard X-rays at the Linac Coherent Light Source

A data set from flash X-ray imaging of carboxysomes

Hantke, Max F.; Hasse, Dirk; Ekeberg, Tomas; John, Katja et al.

Part of Scientific Data, 2016

• DOI for A data set from flash X-ray imaging of carboxysomes
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Open data set of live cyanobacterial cells imaged using an X-ray laser

van der Schot, Gijs; Svenda, Martin; Maia, Filipe R.N.C.; Hantke, Max F. et al.

Part of Scientific Data, 2016

• DOI for Open data set of live cyanobacterial cells imaged using an X-ray laser
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The infectious particle of insect-borne totivirus-like Omono River virus has raised ridges and lacks fibre complexes

Okamoto, Kenta; Miyazaki, Naoyuki; Larsson, Daniel S. D.; Kobayashi, Daisuke et al.

Part of Scientific Reports, 2016

• DOI for The infectious particle of insect-borne totivirus-like Omono River virus has raised ridges and lacks fibre complexes
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Imaging single cells in a beam of live cyanobacteria with an X-ray laser

van der Schot, Gijs; Svenda, Martin; Maia, Filipe R. N. C.; Hantke, Max et al.

Part of Nature Communications, 2015

• DOI for Imaging single cells in a beam of live cyanobacteria with an X-ray laser

High-throughput imaging of heterogeneous cell organelles with an X-ray laser

Hantke, Max F.; Hasse, Dirk; Maia, Filipe R. N. C.; Ekeberg, Tomas et al.

Part of Nature Photonics, p. 943-949, 2014

• DOI for High-throughput imaging of heterogeneous cell organelles with an X-ray laser

Screening for the Location of RNA Using the Chloride Ion Distribution in Simulations of Virus Capsids

Larsson, Daniel; van der Spoel, David

Part of Journal of Chemical Theory and Computation, p. 2474-2483, 2012

• DOI for Screening for the Location of RNA Using the Chloride Ion Distribution in Simulations of Virus Capsids

Virus Capsid Dissolution Studied by Microsecond Molecular Dynamics Simulations

Larsson, Daniel; Liljas, Lars; van der Spoel, David

Part of PloS Computational Biology, 2012

• DOI for Virus Capsid Dissolution Studied by Microsecond Molecular Dynamics Simulations
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Proteins, Lipids, and Water in the Gas Phase

van der Spoel, David; Marklund, Erik G.; Larsson, Daniel S. D.; Caleman, Carl

Part of Macromolecular Bioscience, p. 50-59, 2011

• DOI for Proteins, Lipids, and Water in the Gas Phase

Trajectory NG: portable, compressed, general molecular dynamics trajectories

Spångberg, Daniel; Larsson, Daniel; van der Spoel, David

Part of Journal of Molecular Modeling, p. 2669-2685, 2011

• DOI for Trajectory NG: portable, compressed, general molecular dynamics trajectories

Coherent Diffraction of a Single Virus Particle : The Impact of a Water Layer on the Available Orientational Information

Wang, F; Weckert, E; Ziaja, B; Larsson, Daniel S.D. et al.

Part of Physical Review E. Statistical, Nonlinear, and Soft Matter Physics, 2011

• DOI for Coherent Diffraction of a Single Virus Particle : The Impact of a Water Layer on the Available Orientational Information

Structural stability of electrosprayed proteins: temperature and hydration effects

Marklund, Erik G.; Larsson, Daniel S. D.; van der Spoel, David; Patriksson, Alexandra et al.

Part of Physical Chemistry, Chemical Physics - PCCP, p. 8069-8078, 2009

• DOI for Structural stability of electrosprayed proteins: temperature and hydration effects

Encapsulation of myoglobin in a cetyl trimethylammonium bromide micelle in vacuo: a simulation study

Wang, Yaofeng; Larsson, Daniel S D; van der Spoel, David

Part of Biochemistry, p. 1006-1015, 2009

• DOI for Encapsulation of myoglobin in a cetyl trimethylammonium bromide micelle in vacuo: a simulation study

Molecular Dynamics Simulations of a Membrane Protein-Micelle Complex in Vacuo

Friemann, Rosmarie; Larsson, Daniel S. D.; Wang, Yaofeng; van der Spoel, David

Part of Journal of the American Chemical Society, p. 16606-16607, 2009

• DOI for Molecular Dynamics Simulations of a Membrane Protein-Micelle Complex in Vacuo

Origin and evolution of the mitochondrial aminoacyl-tRNA synthetases

Brindefalk, Björn; Viklund, Johan; Larsson, Daniel; Thollesson, Mikael et al.

Part of Molecular biology and evolution, p. 743-756, 2007

• DOI for Origin and evolution of the mitochondrial aminoacyl-tRNA synthetases

Exploring the Molecular Dynamics of Proteins and Viruses

Larsson, Daniel

2012

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Substrate recognition by 23S RNA methyltransferase RlmF

Kanchugal Puttaswamy, Sandesh; Larsson, Daniel S D; Punekar, Avinash S.; Backbro, K et al.

The compensatory mechanism of a naturally-evolved E167K RF2 counteracting the loss of RF1 in bacteria

Pundir, Shreya; Larsson, Daniel; Selmer, Maria; Sanyal, Suparna