Joakim Lindblad
Professor at Department of Information Technology; Vi3; Image Analysis
- Telephone:
- +46 18 471 34 32
- Mobile phone:
- +46 73 316 85 49
- E-mail:
- joakim.lindblad@it.uu.se
- Visiting address:
- Hus 10, Regementsvägen 10
- Postal address:
- Box 337
751 05 UPPSALA
- Academic merits:
- Docent
Short presentation
ORCID iD: 0000-0001-7312-8222
Keywords
- bildanalys
- artificial intelligence
- image analysis
- deep learning
- image registration
- pattern recognition
- quantitative microscopy
- shape analysis
- maskininlärning
Biography
Joakim Lindblad received the M.Sc. in engineering physics and Ph.D. in computerized image analysis from Uppsala University, Sweden, in 1997 and 2003, respectively. He is currently Professor of Computerized Image Processing at the Department of Information Technology, Uppsala University, Sweden; Senior Research Associate at Mathematical Institute of the Serbian Academy of Sciences and Arts, Serbia; and Head of Research at Topgolf Sweden AB, Stockholm, Sweden. His research interests involve development of general and robust methods for image processing and analysis, including data driven approaches such as deep learning, typically within the context of biomedical and medical applications.

Publications
Recent publications
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Part of Lung Cancer, 2026
- DOI for Incremental prognostic value of immune cell densities beyond clinical parameters in non-small cell lung cancer
- Download full text (pdf) of Incremental prognostic value of immune cell densities beyond clinical parameters in non-small cell lung cancer
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Roadmap on deep learning for microscopy
Part of JPhys Photonics, 2026
- DOI for Roadmap on deep learning for microscopy
- Download full text (pdf) of Roadmap on deep learning for microscopy
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Isolated Channel Vision Transformers: From Single-Channel Pretraining to Multi-Channel Finetuning
Part of 36th British Machine Vision Conference 2025, {BMVC} 2025, p. 1-14, 2025
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Learn2Reg 2024: New Benchmark Datasets Driving Progress on New Challenges
Part of Machine Learning for Biomedical Imaging, p. 775-791, 2025
- DOI for Learn2Reg 2024: New Benchmark Datasets Driving Progress on New Challenges
- Download full text (pdf) of Learn2Reg 2024: New Benchmark Datasets Driving Progress on New Challenges
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Part of Computers in Biology and Medicine, p. 1-14, 2025
- DOI for Let it shine: Autofluorescence of Papanicolaou-stain improves AI-based cytological oral cancer detection
- Download full text (pdf) of Let it shine: Autofluorescence of Papanicolaou-stain improves AI-based cytological oral cancer detection
All publications
Articles in journal
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Part of Lung Cancer, 2026
- DOI for Incremental prognostic value of immune cell densities beyond clinical parameters in non-small cell lung cancer
- Download full text (pdf) of Incremental prognostic value of immune cell densities beyond clinical parameters in non-small cell lung cancer
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Roadmap on deep learning for microscopy
Part of JPhys Photonics, 2026
- DOI for Roadmap on deep learning for microscopy
- Download full text (pdf) of Roadmap on deep learning for microscopy
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Learn2Reg 2024: New Benchmark Datasets Driving Progress on New Challenges
Part of Machine Learning for Biomedical Imaging, p. 775-791, 2025
- DOI for Learn2Reg 2024: New Benchmark Datasets Driving Progress on New Challenges
- Download full text (pdf) of Learn2Reg 2024: New Benchmark Datasets Driving Progress on New Challenges
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Part of Computers in Biology and Medicine, p. 1-14, 2025
- DOI for Let it shine: Autofluorescence of Papanicolaou-stain improves AI-based cytological oral cancer detection
- Download full text (pdf) of Let it shine: Autofluorescence of Papanicolaou-stain improves AI-based cytological oral cancer detection
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UpStory: the uppsala storytelling dataset
Part of Frontiers in Robotics and AI, 2025
- DOI for UpStory: the uppsala storytelling dataset
- Download full text (pdf) of UpStory: the uppsala storytelling dataset
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Part of PLOS ONE, 2024
- DOI for Deep multiple instance learning versus conventional deep single instance learning for interpretable oral cancer detection
- Download full text (pdf) of Deep multiple instance learning versus conventional deep single instance learning for interpretable oral cancer detection
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Cross-modality sub-image retrieval using contrastive multimodal image representations
Part of Scientific Reports, 2024
- DOI for Cross-modality sub-image retrieval using contrastive multimodal image representations
- Download full text (pdf) of Cross-modality sub-image retrieval using contrastive multimodal image representations
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INSPIRE: Intensity and Spatial Information-Based Deformable Image Registration
Part of PLOS ONE, 2023
- DOI for INSPIRE: Intensity and Spatial Information-Based Deformable Image Registration
- Download full text (pdf) of INSPIRE: Intensity and Spatial Information-Based Deformable Image Registration
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A paradigm shift in the prevention and diagnosis of oral squamous cell carcinoma.
Part of Journal of Oral Pathology & Medicine, p. 826-833, 2023
- DOI for A paradigm shift in the prevention and diagnosis of oral squamous cell carcinoma.
- Download full text (pdf) of A paradigm shift in the prevention and diagnosis of oral squamous cell carcinoma.
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Dental hygienists and dentists as providers of brush biopsies for oral mucosa screening
Part of International Journal of Dental Hygiene, p. 524-532, 2023
- DOI for Dental hygienists and dentists as providers of brush biopsies for oral mucosa screening
- Download full text (pdf) of Dental hygienists and dentists as providers of brush biopsies for oral mucosa screening
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Is image-to-image translation the panacea for multimodal image registration?: A comparative study
Part of PLOS ONE, 2022
- DOI for Is image-to-image translation the panacea for multimodal image registration?: A comparative study
- Download full text (pdf) of Is image-to-image translation the panacea for multimodal image registration?: A comparative study
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Part of Pattern Recognition Letters, p. 196-203, 2022
- DOI for Fast computation of mutual information in the frequency domain with applications to global multimodal image alignment
- Download full text (pdf) of Fast computation of mutual information in the frequency domain with applications to global multimodal image alignment
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Guest Editorial: Discrete Geometry and Mathematical Morphology
Part of Journal of Mathematical Imaging and Vision, p. 691-692, 2022
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Part of Journal of Maxillofacial and Oral Surgery, p. 23-32, 2022
- DOI for Early Detection of Oral Potentially Malignant Disorders: A Review on Prospective Screening Methods with Regard to Global Challenges
- Download full text (pdf) of Early Detection of Oral Potentially Malignant Disorders: A Review on Prospective Screening Methods with Regard to Global Challenges
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CytoBrowser: a browser-based collaborative annotation platform for whole slide images
Part of F1000 Research, 2021
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Stochastic Distance Transform: Theory, Algorithms and Applications
Part of Journal of Mathematical Imaging and Vision, p. 751-769, 2020
- DOI for Stochastic Distance Transform: Theory, Algorithms and Applications
- Download full text (pdf) of Stochastic Distance Transform: Theory, Algorithms and Applications
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Generalised deep learning framework for HEp-2 cell recognition using local binary pattern maps
Part of IET Image Processing, p. 1201-1208, 2020
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Part of Journal of Electronic Imaging (JEI), 2019
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Part of IEEE Transactions on Image Processing, p. 3584-3597, 2019
- DOI for Fast and Robust Symmetric Image Registration Based on Distances Combining Intensity and Spatial Information
- Download full text (pdf) of Fast and Robust Symmetric Image Registration Based on Distances Combining Intensity and Spatial Information
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Facilitating Ultrastructural Pathology through Automated Imaging and Analysis
Part of Journal of Pathology Informatics, p. 38-39, 2019
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Part of Journal of Electronic Imaging (JEI), 2016
- DOI for Restoration of images degraded by signal-dependent noise based on energy minimization: an empirical study
- Download full text (pdf) of Restoration of images degraded by signal-dependent noise based on energy minimization: an empirical study
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Estimation of Feret's diameter from pixel coverage representation of a shape
Part of Pattern Recognition Letters, p. 37-45, 2016
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Estimation of linear deformations of 2D and 3D fuzzy objects
Part of Pattern Recognition, p. 1391-1403, 2015
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Precise Euclidean distance transforms in 3D from voxel coverage representation
Part of Pattern Recognition Letters, p. 184-191, 2015
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Linear time distances between fuzzy sets with applications to pattern matching and classification
Part of IEEE Transactions on Image Processing, p. 126-136, 2014
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A new set distance and its application to shape registration
Part of Pattern Analysis and Applications, p. 141-152, 2014
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Blind Color Decomposition of Histological Images
Part of IEEE Transactions on Medical Imaging, p. 983-994, 2013
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Coverage segmentation based on linear unmixing and minimization of perimeter and boundary thickness
Part of Pattern Recognition Letters, p. 728-738, 2012
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Regularized image denoising based on spectral gradient optimization
Part of Inverse Problems, 2011
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A Graph-based Framework for Sub-pixel Image Segmentation
Part of Theoretical Computer Science, p. 1338-1349, 2011
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Defuzzification of spatial fuzzy sets by feature distance minimization
Part of Image and Vision Computing, p. 127-141, 2011
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Part of Nuclear Instruments and Methods in Physics Research Section A, p. 143-148, 2011
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Part of Nuclear Instruments and Methods in Physics Research Section A, p. 143-148, 2011
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Part of Computer Methods and Programs in Biomedicine, p. 25-34, 2011
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Part of Aging Cell, p. 685-697, 2010
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Part of Experimental Physiology, p. 117-129, 2009
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Part of Neuromuscular Disorders, p. 605-606, 2009
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Part of International Journal of Adhesion and Adhesives, p. 551-557, 2009
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High-precision boundary length estimation by utilizing gray-level information
Part of IEEE Transactions on Pattern Analysis and Machine Intelligence, p. 357-363, 2009
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Part of Neuromuscular Disorders, p. 605-606, 2009
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Part of Biophysical Journal, 2007
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Representation and Reconstruction of Fuzzy Disks by Moments
Part of Fuzzy sets and systems (Print), p. 517-534, 2007
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Surface Area Estimation of Digitized 3D Objects using Weighted Local Configurations
Part of Image and Vision Computing, p. 111-122, 2005
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Robust cell image segmentation methods
Part of Pattern Recognition and Image Analysis: Advances in Mathematical Theory and Applications, p. 157-167, 2004
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Image Analysis for Automatic Segmentation of Cytoplasms and Classification of Rac1 Activation
Part of Cytometry, p. 22-23, 2004
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Algorithms for cytoplasm segmentation of fluorescence labeled cells
Part of Analytical Cellular Pathology, p. 101-111, 2002
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Part of In Proceedings of the 12th Scandinavian Conference on Image Analysis (SCIA), Bergen, Norway, p. 264-271, 2001
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Statistical quality control for segmentation of fluorescence labeled cells
Part of In Proceedings of the 5th Korea-Germany Joint Workshop on Advanced Medical Image Processing, Seoul, Korea, 2001
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Histogram thresholding using kernel density estimates
Part of In Proceedings of the Swedish Society for Automated Image Analysis (SSAB) Symposium on Image Analysis, Halmstad, Sweden, p. 41-44, 2000
Articles, review/survey
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Correlated multimodal imaging in life sciences: lessons learnt
Part of Frontiers in Biomaterials Science, 2024
- DOI for Correlated multimodal imaging in life sciences: lessons learnt
- Download full text (pdf) of Correlated multimodal imaging in life sciences: lessons learnt
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Icke-invasiv kontroll av cellförändringar i munslemhinnan
Part of Tandläkartidningen, p. 48-55, 2021
Chapters in book
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Introduction: computer-assisted analysis of multimodal image data
Part of Imaging Modalities for Biological and Preclinical Research, Institute of Physics Publishing (IOPP), 2021
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Computer-assisted analysis of multimodal image data—perspectives and conclusion
Part of Imaging Modalities for Biological and Preclinical Research, Institute of Physics Publishing (IOPP), 2021
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The coverage model and its use in image processing
Part of Selected Topics on Image Processing and Cryptology, p. 39-117, Mathematical Institute of the Serbian Academy of Sciences and Arts, 2012
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Part of Proceedings of the 12th Scandinavian Conference on Image Analysis (SCIA), 2001
Collections (editor)
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Springer, 2021
Comprehensive doctoral thesis
Conference papers
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Isolated Channel Vision Transformers: From Single-Channel Pretraining to Multi-Channel Finetuning
Part of 36th British Machine Vision Conference 2025, {BMVC} 2025, p. 1-14, 2025
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A Comparison of Deep Learning Methods for Cell Detection in Digital Cytology
Part of Image Analysis, p. 264-277, 2025
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Part of Pattern Recognition, p. 408-421, 2024
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Part of Detection of Extremely Sparse Key Instances in Whole Slide Cytology Images via Self-supervised One-class Representation Learning, p. 408-421, 2024
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Are We Friends?: End-to-End Prediction of Child Rapport in Guided Play
Part of Computer Vision – ECCV 2024 Workshops, p. 380-392, 2024
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Part of IbPRIA 2023: Pattern Recognition and Image Analysis, p. 261-275, 2023
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Partial dimensional collapse in contrastive learning when using intermediate layers
2023
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2023
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Contrastive Learning of Equivariant Image Representations for Multimodal Deformable Registration
Part of 2023 IEEE 20th International Symposium on Biomedical Imaging (ISBI), 2023
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2023
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DCNN based Oral Cancer Screening using Whole Slide Cytology Images: Effect of Increased Patch Size
2022
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Rotation-Equivariant Semantic Instance Segmentation on Biomedical Images
Part of MEDICAL IMAGE UNDERSTANDING AND ANALYSIS, MIUA 2022, p. 283-297, 2022
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Efficient Algorithms for Global Multimodal Image Registration
2022
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Rotationally Equivariant Representation Learning for Multimodal Images
2022
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2022
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Label-Free Reverse Image Search of Multimodal Microscopy Images
2022
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Re-Ranking Strategies in Cross-Modality Microscopy Retrieval
2022
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Part of ICMI '22, p. 444-454, 2022
- DOI for End-to-End Learning and Analysis of Infant Engagement During Guided Play: Prediction and Explainability
- Download full text (pdf) of End-to-End Learning and Analysis of Infant Engagement During Guided Play: Prediction and Explainability
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End-to-end Multiple Instance Learning with Gradient Accumulation
Part of 2022 IEEE International Conference on Big Data (Big Data), p. 2742-2746, 2022
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Part of Companion Publication of the 2021 International Conference on Multimodal Interaction, p. 403-407, 2021
- DOI for Automatic Analysis of Infant Engagement during Play: An End-to-end Learning and Explainable AI Pilot Experiment
- Download full text (pdf) of Automatic Analysis of Infant Engagement during Play: An End-to-end Learning and Explainable AI Pilot Experiment
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The Effect of Within-Bag Sampling on End-to-End Multiple Instance Learning
Part of Proceedings of the 12th International Symposium on Image and Signal Processing and Analysis (ISPA), p. 183-188, 2021
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2021
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Registration of Multimodal Microscopy Images using CoMIR – learned structural image representations
2021
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Image-to-Image Translation in Multimodal Image Registration: How Well Does It Work?
2021
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Contrastive Learning for Equivariant Multimodal Image Representations
2021
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Part of Progress in Pattern Recognition, Image Analysis, Computer Vision, and Applications, p. 24-33, 2021
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Comir: Contrastive multimodal image representation for registration
2021
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CoMIR: Contrastive Multimodal Image Representation for Registration
Part of NeurIPS - 34th Conference on Neural Information Processing Systems, 2020
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Part of 2020 IEEE 17th International Symposium on Biomedical Imaging (ISBI), p. 517-521, 2020
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Part of 4th NEUBIAS Conference, Bordeaux, France, 2020
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A Deep Learning Based Pipeline for Efficient Oral Cancer Screening on Whole Slide Images
Part of Image Analysis and Recognition, p. 249-261, 2020
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Part of 4th NEUBIAS Conference, Bordeaux, France, 2020
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Robust Symmetric Affine Image Registration
Part of Swedish Symposium on Image Analysis, 2019
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Part of 3rd NEUBIAS Conference, Luxembourg, 2-8 February 2019, 2019
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Oral Cancer Detection: A Comparison of Texture Focused Deep Learning Approaches
Part of Proceedings of the Swedish Society for Automated Image Analysis (SSBA), 2019
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Towards automated multiscale Glomeruli detection and analysis in TEM by fusion of CNN and LBP maps
Part of 3rd NEUBIAS Conference, 2019
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On the Effectiveness of Generative Adversarial Networks as HEp-2 Image Augmentation Tool
Part of Scandinavian Conference on Image Analysis, p. 439-451, 2019
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Part of Computer Vision, p. 465-475, 2019
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Stochastic Distance Functions with Applications in Object Detection and Image Segmentation
Part of Swedish Symposium on Image Analysis, 2019
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Part of Discrete Geometry for Computer Imagery, p. 75-86, 2019
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Texture-based oral cancer detection: A performance analysis of deep learning approaches.
Part of 3rd NEUBIAS Conference, 2019
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Denoising of short exposure transmission electron microscopy images for ultrastructural enhancement
Part of Proc. 15th International Symposium on Biomedical Imaging, p. 921-925, 2018
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Part of Swedish Symposium on Deep Learning, 2018
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Denoising of Short Exposure Transmission Electron Microscopy Images using CNN
Part of Swedish Symposium on Image Analysis, 2018
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Part of EAOM2018, 2018
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Part of CYTO2018, 2018
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Part of Swedish Symposium on Image Analysis, 2018
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Part of Swedish Symposium on Image Analysis, 2017
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Part of Swedish Symposium on Image Analysis, 2017
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Decoding gene expression in 2D and 3D
Part of Image Analysis, p. 257-268, 2017
- DOI for Decoding gene expression in 2D and 3D
- Download full text (pdf) of Decoding gene expression in 2D and 3D
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Part of Image Analysis, p. 362-374, 2017
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Part of Mathematical Morphology and its Applications to Signal and Image Processing, p. 395-407, 2017
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Part of In Proc. of the 18th International Workshop on Combinatorial Image Analysis, IWCIA2017, p. 243-255, 2017
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Part of Image Analysis, p. 407-418, 2017
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Part of Proceedings of the Swedish Society for Automated Image Analysis, p. 137-141, 2016
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Single image super-resolution reconstruction in presence of mixed Poisson-Gaussian noise
Part of 2016 SIXTH INTERNATIONAL CONFERENCE ON IMAGE PROCESSING THEORY, TOOLS AND APPLICATIONS (IPTA), 2016
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Signature of a Shape Based on Its Pixel Coverage Representation
Part of Discrete Geometry for Computer Imagery, DGCI 2016. Lecture Notes in Computer Science, Vol. 9647, pp. 181-193, Springer 2016, p. 181-193, 2016
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Part of 2016 Ieee 13Th International Symposium On Biomedical Imaging (ISBI), p. 123-127, 2016
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Part of Biomedical Imaging (ISBI), 2016 IEEE 13th International Symposium on, p. 386-390, 2016
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Coverage segmentation of 3D thin structures
Part of Proc. 5th International Conference on Image Processing Theory, Tools and Applications, p. 23-28, 2015
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Microscopy image enhancement for cost-effective cervical cancer screening
Part of Image Analysis, p. 440-451, 2015
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High-resolution reconstruction by feature distance minimization from multiple views of an object
Part of Proc. 5th International Conference on Image Processing Theory, Tools and Applications, p. 29-34, 2015
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αLBP – a novel member of the Local Binary Pattern family based on α-cutting
Part of Proc. 9th International Symposium on Image and Signal Processing and Analysis, p. 13-18, 2015
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Exact linear time Euclidean distance transforms of grid line sampled shapes
Part of Mathematical Morphology and its Applications to Signal and Image Processing, p. 645-656, 2015
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An evaluation of potential functions for regularized image deblurring
Part of Image Analysis and Recognition, p. 150-158, 2014
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Optimizing optics and imaging for pattern recognition based screening tasks
Part of Proc. 22nd International Conference on Pattern Recognition, p. 3333-3338, 2014
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Coverage segmentation of thin structures by linear unmixing and local centre of gravity attraction
Part of Proc. 8th International Symposium on Image and Signal Processing and Analysis, p. 83-88, 2013
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Distance measures between digital fuzzy objects and their applicability in image processing
Part of Combinatorial Image Analysis, p. 385-397, 2011
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Precise Estimation of the Projection of a Shape from a Pixel Coverage Representation
Part of Proceedings of the 7th IEEE International Symposium on Image and Signal Processing and Analysis (ISPA), p. 569-574, 2011
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The Sum of minimal distances as a useful distance measure for image registration
Part of Proceedings SSBA 2010, p. 55-58, 2010
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Methods for Visualization of Bone Tissue in the Proximity of Implants
Part of International Conference on Computer Vision and Graphics, p. 243-250, 2010
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De-noising of SRµCT Fiber Images by Total Variation Minimization
Part of Proceedings of the 20th International Conference on Pattern Recognition (ICPR10), p. 4621-4624, 2010
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Methods for 3D Visualization of Bone Tissue in the Proximity of Implants
Part of Swedish Symposium on Image Analysis 2010, p. 149-152, 2010
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Estimation of linear deformations of 3D objects
Part of Proceedings of 2010 IEEE 17th International Conference on Image Processing, p. 153-156, 2010
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Recovering Affine Deformations of Fuzzy Shapes
Part of 16th Scandinavian Conference on Image Analysis, p. 735-744, 2009
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Quantification of Bone Remodeling in SRuCTImages of Implants
Part of 16th Scandinavian Conference, SCIA 2009, Oslo, Norway, June 15-18, 2009, p. 770-779, 2009
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Dimensionality Reduction for Colour Based Pixel Classification
Part of Proceedings SSBA 2009, p. 65-68, 2009
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Part of 9th International ELMI Meeting on Advanced Light Microscopy, p. 66-67, 2009
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Pixel Coverage Segmentation for Improved Feature Estimation
Part of 15th International Conference on Image Analysis and Processing, p. 929-938, 2009
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Sub-pixel Segmentation with the Image Foresting Transform
Part of Proceedings of International Workshop on Combinatorial Image Analysis, p. 201-211, 2009
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Improved Quantification of Bone Remodelling by Utilizing Fuzzy Based Segmentation
Part of Image Analysis, p. 750-759, 2009
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On set distances and their application to image registration
Part of Proc. 6th International Symposium on Image and Signal Processing and Analysis, p. 449-454, 2009
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Correction in 3D Confocal Images
Part of Proceedings of the 2008 Symposium on Image Analysis, p. 31-34, 2008
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Att hitta ett histologiskt 2D snitt av ett benimplantat i en 3D mikrotomografivolym
Part of Medicinteknikdagarna 2008, p. 103-103, 2008
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Part of AstraTech World Congress 2008, p. 136-137, 2008
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Registration of 2D Histological Images of Bone Implants with 3D SRμCT Volumes
Part of Advances in Visual Computing, p. 1071-1080, 2008
- DOI for Registration of 2D Histological Images of Bone Implants with 3D SRμCT Volumes
- Download full text (pdf) of Registration of 2D Histological Images of Bone Implants with 3D SRμCT Volumes
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Registration of 2D Histological Images of Bone Implants with 3D SRuCT Volumes
Part of SSBA 2008, p. 19-22, 2008
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Part of Proc. 5th International Symposium on Biomedical Imaging, p. 1363-1366, 2008
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An Automated Image Analysis Method for Measuring Fibre Contact in Fibrous and Composite Materials
Part of 13th European Conference on Composite Materials (ECCM), 2008
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Algorithms for cross-talk suppression in fluorescence microscopy
Part of Medicinteknikdagarna 2008, p. 64-64, 2008
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Deterministic Defuzzification based on Spectral Projected Gradient Optimization
Part of 30th Symposium of the German Association for Pattern Recognition (DAGM), p. 476-485, 2008
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Part of Proceedings SSBA 2008, Symposium on image analysis, Lund, 2008
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Spatially-variant morphological operations on binary images based on the polar distance transform
Part of ICPR 2008, 2008
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Analysis of Skeletal Fibers in Three Dimensional Images
Part of Medicinteknikdagarna 2007, p. 1, 2007
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Image Analysis of Bone Tissue Remodelling Around Implants
Part of European Conference on Biomaterials 2007, 2007
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Quantification of bone remodeling in the proximity of implants
Part of 12th Int. Conf. on Computer Analysis of Images and Patterns, p. 253-260, 2007
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Analysis of Histological Image and SRuCT Image Volumes of Bone Remodeling Around Implants
Part of Proceedings SSBA 2007, p. 4, 2007
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Grey Weighted Polar Distance Transform for Outlining Circular and Approximately Circular Objects
Part of 14th International Conference on Image Analysis and Processing, p. 647-652, 2007
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Analysis of Skeletal Fibers in Three Dimensional Images: Methodological considerations
Part of XXXVIth European Muscle Conference of the European Society for Muscle Research, p. 130, 2007
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Defuzzification by Feature Distance Minimization Based on DC Programming
Part of 5th International Symposium on Image and Signal Processing and Analysis, 2007, p. 373-378, 2007
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Part of Progress in Paper Physics Seminar, Oxford, Ohio, 2006, 2006
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Feature Based Defuzzification at Increased Spatial Resolution
Part of Combinatorial Image Analysis, p. 131-143, 2006
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Part of 2006 Progress in Paper Physics, 2006
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Part of 2006 Progress in Paper Physics, 2006
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Feature Based Defuzzification in Z² and Z³ Using a Scale Space Approach
Part of Discrete Geometry for Computer Imagery 13th International Conference, DGCI 2006, Szeged, Hungary, October 25-27, 2006. Proceedings, p. 379-390, 2006
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Surface Volume Estimation of Digitized Hyperplanes Using Weighted Local Configurations
Part of Proceedings of Discrete Geometry for Computer Imagery, p. 252-262, 2005
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Estimation of moments of digitized objects with fuzzy borders
Part of Proc. of 13th International Conference on Image Analysis and Processing, p. 188-195, 2005
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Segmentation and separation of point like fluorescent markers in digital images
Part of ISBI2004, p. 1291-1294, 2004
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Defuzzification of discrete objects by optimizing area and perimeter similarity
Part of Proceedings of International Conference on Pattern Recognition (ICPR 2004), p. 526-629, 2004
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Segmentation of point-like fluorescent markers
Part of Proceedings, p. 146-149, 2004
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Surface area estimation of digitized planes using weighted local configurations
Part of 11th International Conference on Discrete Geometry for Computer Imagery (DGCI), p. 348-357, 2003
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Surface area estimation of digitized 3D objects using local computations
Part of Proceedings of Discrete Geometry for Computer Imagery (DGCI2002), p. 267-278, 2002
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Analysis of cells using image data from sequential immunofluorescence staining experiments
Part of 5th Korea-Germany Joint Workshop on Advanced Medical Image Processing, Seoul, Korea, 2001
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Perimeter and Area Estimates for Digitized Objects
Part of Swedish Society for Automated Image Analysis Symposium - SSAB 2001, ITN, Campus, p. 113-117, 2001
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Part of Proceedings of SCIA-01 (Scandinavian Conference on Image Analysis), p. 25-31, 2001
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Part of Proceedings of the 12th Scandinavian Conference on Image Analysis (SCIA), p. 264-271, 2001
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Statistical quality control for segmentation of fluorescence labelled cells
Part of 5th Korea-Germany Joint Workshop on Advanced Medical Image Processing, Seoul, Korea, 2001
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Automatic cytoplasm segmentation of fluorescence labelled cells
Part of Symposium on Image Analysis - SSAB 2000, p. 29-32, 2000
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Histogram thresholding using kernel density estimates
Part of Symposium on Image Analysis - SSAB 2000, p. 41-44, 2000
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Part of Amersham Pharmacia Biotech Uppsala R&D day, December 2, 1999., 1999
Manuscripts (preprints)
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2021
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Is Image-to-Image Translation the Panacea for Multimodal Image Registration? A Comparative Study
2021
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A Deep Learning based Pipeline for Efficient Oral Cancer Screening on Whole Slide Images
2019
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Fast and Robust Symmetric Image Registration Based on Intensity and Spatial Information
2018
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Sensitive key instance detection: Helping a cytotechnologist to find a needle in a haystack
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- DOI for From Cells to Survival: Hierarchical Analysis of Cell Inter-Relations in Multiplex Microscopy for Lung Cancer Prognosis
- Download full text (pdf) of From Cells to Survival: Hierarchical Analysis of Cell Inter-Relations in Multiplex Microscopy for Lung Cancer Prognosis