Kerstin Lindblad-Toh

A variant in RESF1 is associated with Addison's disease and multiple autoimmune syndrome in young Nova Scotia Duck Tolling Retrievers

Brown, Emily; Varney, Scarlett; Young, Amy; Wolf, Zena et al.

Part of Scientific Reports, 2026

• DOI for A variant in RESF1 is associated with Addison's disease and multiple autoimmune syndrome in young Nova Scotia Duck Tolling Retrievers
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Rare germline variants contribute to glioma predisposition: Whole-genome analysis of a regional cohort of glioma patients

Rosenbaum, Adam; Wibom, Carl; Hammermeister Suger, Austin; Pensch, Raphaela et al.

Part of Neuro-Oncology Advances, 2026

• DOI for Rare germline variants contribute to glioma predisposition: Whole-genome analysis of a regional cohort of glioma patients
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Characterization of the genomic landscape of canine diffuse large B-cell lymphoma reveals recurrent H3K27M mutations linked to progression-free survival

van der Heiden, Anna Darlene; Pensch, Raphaela; Agger, Sophie; Gardner, Heather L. et al.

Part of Scientific Reports, 2025

• DOI for Characterization of the genomic landscape of canine diffuse large B-cell lymphoma reveals recurrent H3K27M mutations linked to progression-free survival
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The Earth BioGenome Project Phase II: illuminating the eukaryotic tree of life

Blaxter, Mark; Lewin, Harris A.; DiPalma, Federica; Challis, Richard et al.

Part of Frontiers in Science, 2025

• DOI for The Earth BioGenome Project Phase II: illuminating the eukaryotic tree of life

Integrating extensive functional annotations and multiomics of cattle enhances climate resilience prediction and mapping

Xiang, Ruidong; Breen, Edmond; Bolormaa, Sunduimijid; Liu, Zhiqian et al.

Part of Proceedings of the National Academy of Sciences of the United States of America, 2025

• DOI for Integrating extensive functional annotations and multiomics of cattle enhances climate resilience prediction and mapping
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A variant in RESF1 is associated with Addison's disease and multiple autoimmune syndrome in young Nova Scotia Duck Tolling Retrievers

Brown, Emily; Varney, Scarlett; Young, Amy; Wolf, Zena et al.

Part of Scientific Reports, 2026

• DOI for A variant in RESF1 is associated with Addison's disease and multiple autoimmune syndrome in young Nova Scotia Duck Tolling Retrievers
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Rare germline variants contribute to glioma predisposition: Whole-genome analysis of a regional cohort of glioma patients

Rosenbaum, Adam; Wibom, Carl; Hammermeister Suger, Austin; Pensch, Raphaela et al.

Part of Neuro-Oncology Advances, 2026

• DOI for Rare germline variants contribute to glioma predisposition: Whole-genome analysis of a regional cohort of glioma patients
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Characterization of the genomic landscape of canine diffuse large B-cell lymphoma reveals recurrent H3K27M mutations linked to progression-free survival

van der Heiden, Anna Darlene; Pensch, Raphaela; Agger, Sophie; Gardner, Heather L. et al.

Part of Scientific Reports, 2025

• DOI for Characterization of the genomic landscape of canine diffuse large B-cell lymphoma reveals recurrent H3K27M mutations linked to progression-free survival
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The Earth BioGenome Project Phase II: illuminating the eukaryotic tree of life

Blaxter, Mark; Lewin, Harris A.; DiPalma, Federica; Challis, Richard et al.

Part of Frontiers in Science, 2025

• DOI for The Earth BioGenome Project Phase II: illuminating the eukaryotic tree of life

Integrating extensive functional annotations and multiomics of cattle enhances climate resilience prediction and mapping

Xiang, Ruidong; Breen, Edmond; Bolormaa, Sunduimijid; Liu, Zhiqian et al.

Part of Proceedings of the National Academy of Sciences of the United States of America, 2025

• DOI for Integrating extensive functional annotations and multiomics of cattle enhances climate resilience prediction and mapping
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Genome Variation in Three Anthophora Bee Species Reflects Divergent Demographic Histories

Taliadoros, Demetris; Soares, André; Dias, Guilherme; Bunikis, Ignas et al.

Part of Molecular Ecology, 2025

• DOI for Genome Variation in Three Anthophora Bee Species Reflects Divergent Demographic Histories
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Autosomal dominant primary hyperparathyroidism in the Keeshond dog breed is strongly associated with a missense variant in sirtuin-6

Wade, Claire M.; Burmeister, Louise M.; Skelly, Barbara J.; McLaughlin, Bryan et al.

Part of Animal Genetics, 2025

• DOI for Autosomal dominant primary hyperparathyroidism in the Keeshond dog breed is strongly associated with a missense variant in sirtuin-6

Genetic Adaptation to Brackish Water and Spawning Season in European Cisco

Deng, Qiaoling; Goodall, Jake; Bergenius Nord, Mikaela; Bunikis, Ignas et al.

Part of Molecular Ecology, 2025

• DOI for Genetic Adaptation to Brackish Water and Spawning Season in European Cisco
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Genome-wide analyses identify 30 loci associated with obsessive-compulsive disorder

Strom, Nora I.; Gerring, Zachary F.; Galimberti, Marco; Yu, Dongmei et al.

Part of Nature Genetics, 2025

• DOI for Genome-wide analyses identify 30 loci associated with obsessive-compulsive disorder
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A burden of rare copy number variants in obsessive-compulsive disorder

Halvorsen, Matthew W.; de Schipper, Elles; Bäckman, Julia; Strom, Nora I. et al.

Part of Molecular Psychiatry, p. 1510-1517, 2025

• DOI for A burden of rare copy number variants in obsessive-compulsive disorder
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Measures of Homozygosity and Relationship to Genetic Diversity in the Bearded Collie Breed

Belanger, Janelle M.; Gershony, Liza C.; Bell, Jerold S.; Hytönen, Marjo K. et al.

Part of Genes, 2025

• DOI for Measures of Homozygosity and Relationship to Genetic Diversity in the Bearded Collie Breed
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Unraveling the Genetics of Shared Clinical and Serological Manifestations in Patients With Systemic Inflammatory Autoimmune Diseases

Bianchi, Matteo; Kozyrev, Sergey V.; Notarnicola, Antonella; Sandling, Johanna K. et al.

Part of Arthritis & Rheumatology, p. 212-225, 2025

• DOI for Unraveling the Genetics of Shared Clinical and Serological Manifestations in Patients With Systemic Inflammatory Autoimmune Diseases
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Interpreting mammalian synonymous site conservation in light of the unwanted transcript hypothesis

Christmas, Matthew; Dong, Michael X.; Meadows, Jennifer R. S.; Kozyrev, Sergey V. et al.

Part of Nature Communications, 2025

• DOI for Interpreting mammalian synonymous site conservation in light of the unwanted transcript hypothesis
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A survey of ficolin-3 activity in Systemic Lupus Erythematosus reveals a link to hematological disease manifestations and autoantibody profile

Lindelöf, Linnea; Rantapää-Dahlqvist, Solbritt; Lundtoft, Christian; Sandling, Johanna K. et al.

Part of Journal of Autoimmunity, 2024

• DOI for A survey of ficolin-3 activity in Systemic Lupus Erythematosus reveals a link to hematological disease manifestations and autoantibody profile
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Identification of constrained sequence elements across 239 primate genomes

Kuderna, Lukas F. K.; Ulirsch, Jacob C.; Rashid, Sabrina; Ameen, Mohamed et al.

Part of Nature, p. 735-742, 2024

• DOI for Identification of constrained sequence elements across 239 primate genomes
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The HLA region in ANCA-associated vasculitis: characterisation of genetic associations in a Scandinavian patient population

Lundtoft, Christian; Knight, Ann; Meadows, Jennifer; Karlsson, Åsa et al.

Part of RMD Open, 2024

• DOI for The HLA region in ANCA-associated vasculitis: characterisation of genetic associations in a Scandinavian patient population
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Genome wide association study in Swedish Labrador retrievers identifies genetic loci associated with hip dysplasia and body weight

Kieler, Ida Nordang; Persson, Sofia Malm; Hagman, Ragnvi; Marinescu, Voichita et al.

Part of Scientific Reports, 2024

• DOI for Genome wide association study in Swedish Labrador retrievers identifies genetic loci associated with hip dysplasia and body weight
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Assessment of glial fibrillary acidic protein and anti‐glial fibrillary acidic protein autoantibody concentrations and necrotising meningoencephalitis risk genotype in dogs with pug dog myelopathy

Rohdin, Cecilia; Ljungvall, Ingrid; Jäderlund, Karin Hultin; Svensson, Anna et al.

Part of The Veterinary Record, 2024

• DOI for Assessment of glial fibrillary acidic protein and anti‐glial fibrillary acidic protein autoantibody concentrations and necrotising meningoencephalitis risk genotype in dogs with pug dog myelopathy
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In sickness and health - a questionnaire based study regarding immune mediated diseases and neoplasia in Swedish Nova Scotia Duck Tolling Retrievers

Nilsson, Malin; Kozyrev, Sergey V.; Lindblad-Toh, Kerstin; Roennberg, Henrik et al.

Part of Acta Veterinaria Scandinavica, 2024

• DOI for In sickness and health - a questionnaire based study regarding immune mediated diseases and neoplasia in Swedish Nova Scotia Duck Tolling Retrievers
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Hemangiosarcoma Cells Promote Conserved Host-derived Hematopoietic Expansion

Kim, Jong Hyuk; Schulte, Ashley J.; Sarver, Aaron L.; Lee, Donghee et al.

Part of Cancer Research Communications, p. 1467-1480, 2024

• DOI for Hemangiosarcoma Cells Promote Conserved Host-derived Hematopoietic Expansion
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Elevated levels of IL-12/IL-23p40 in Nova Scotia Duck Tolling Retrievers with autoimmune disease and lymphoma

Nilsson, Malin; Kozyrev, Sergey V.; Saellstrom, Sara; Johansson, Siri et al.

Part of Scientific Reports, 2024

• DOI for Elevated levels of IL-12/IL-23p40 in Nova Scotia Duck Tolling Retrievers with autoimmune disease and lymphoma
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Mutations in the CYP27B1 gene cause vitamin D dependent rickets in pugs

Rohdin, Cecilia; Wang, Chao; Brander, Gustaf; Rondahl, Veronica et al.

Part of Journal of Veterinary Internal Medicine, p. 1507-1513, 2023

• DOI for Mutations in the CYP27B1 gene cause vitamin D dependent rickets in pugs
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Insights into mammalian TE diversity through the curation of 248 genome assemblies

Osmanski, Austin B.; Paulat, Nicole S.; Korstian, Jenny; Grimshaw, Jenna R. et al.

Part of Science, p. 371-+, 2023

• DOI for Insights into mammalian TE diversity through the curation of 248 genome assemblies

Distinct HLA associations with autoantibody-defined subgroups in idiopathic inflammatory myopathies

Leclair, Valerie; Galindo-Feria, Angeles S.; Rothwell, Simon; Krystufkova, Olga et al.

Part of EBioMedicine, 2023

• DOI for Distinct HLA associations with autoantibody-defined subgroups in idiopathic inflammatory myopathies
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Relation between HLA and copy number variation of steroid 21-hydroxylase in a Swedish cohort of patients with autoimmune Addison's disease

Lundtoft, Christian; Eriksson, Daniel; Bianchi, Matteo; Aranda-Guillen, Maribel et al.

Part of European Journal of Endocrinology, p. 235-241, 2023

• DOI for Relation between HLA and copy number variation of steroid 21-hydroxylase in a Swedish cohort of patients with autoimmune Addison's disease
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Bayesian mixed model analysis uncovered 21 risk loci for chronic kidney disease in boxer dogs

Lingaas, Frode; Tengvall, Katarina; Jansen, Johan Hogset; Pelander, Lena et al.

Part of PLOS Genetics, 2023

• DOI for Bayesian mixed model analysis uncovered 21 risk loci for chronic kidney disease in boxer dogs
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Leveraging base-pair mammalian constraint to understand genetic variation and human disease

Sullivan, Patrick F.; Meadows, Jennifer; Gazal, Steven; Phan, BaDoi N. et al.

Part of Science, p. 367-+, 2023

• DOI for Leveraging base-pair mammalian constraint to understand genetic variation and human disease

Using evolutionary constraint to define novel candidate driver genes in medulloblastoma

Roy, Ananya; Sakthikumar, Sharadha; Kozyrev, Sergey V.; Nordin, Jessika et al.

Part of Proceedings of the National Academy of Sciences of the United States of America, 2023

• DOI for Using evolutionary constraint to define novel candidate driver genes in medulloblastoma
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Three-dimensional genome rewiring in loci with human accelerated regions

Keough, Kathleen C.; Whalen, Sean; Inoue, Fumitaka; Przytycki, Pawel F. et al.

Part of Science, 2023

• DOI for Three-dimensional genome rewiring in loci with human accelerated regions

The functional and evolutionary impacts of human-specific deletions in conserved elements

Xue, James R.; Mackay-Smith, Ava; Mouri, Kousuke; Garcia, Meilin Fernandez et al.

Part of Science, 2023

• DOI for The functional and evolutionary impacts of human-specific deletions in conserved elements

Stratified genetic analysis reveals sex differences in MPO-ANCA-associated vasculitis

Ekman, Diana; Sennblad, Bengt; Knight, Ann; Karlsson, Åsa et al.

Part of Rheumatology, p. 3213-3218, 2023

• DOI for Stratified genetic analysis reveals sex differences in MPO-ANCA-associated vasculitis
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Multiple Genetic Loci Associated with Pug Dog Thoracolumbar Myelopathy

Brander, Gustaf; Rohdin, Cecilia; Bianchi, Matteo; Bergvall, Kerstin et al.

Part of Genes, 2023

• DOI for Multiple Genetic Loci Associated with Pug Dog Thoracolumbar Myelopathy
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Relating enhancer genetic variation across mammals to complex phenotypes using machine learning

Kaplow, Irene M.; Lawler, Alyssa J.; Schäffer, Daniel E.; Srinivasan, Chaitanya et al.

Part of Science, 2023

• DOI for Relating enhancer genetic variation across mammals to complex phenotypes using machine learning

​Comparative genomics of Balto, a famous historic dog, captures lost diversity of 1920s sled dogs

Moon, Katherine L.; Huson, Heather J.; Morrill, Kathleen; Wang, Ming-Shan et al.

Part of Science, 2023

• DOI for ​Comparative genomics of Balto, a famous historic dog, captures lost diversity of 1920s sled dogs

Mammalian evolution of human cis-regulatory elements and transcription factor binding sites

Andrews, Gregory; Fan, Kaili; Pratt, Henry E.; Phalke, Nishigandha et al.

Part of Science, 2023

• DOI for Mammalian evolution of human cis-regulatory elements and transcription factor binding sites

Integrating gene annotation with orthology inference at scale

Kirilenko, Bogdan M.; Munegowda, Chetan; Osipova, Ekaterina; Jebb, David et al.

Part of Science, p. 368-+, 2023

• DOI for Integrating gene annotation with orthology inference at scale

Genome sequencing of 2000 canids by the Dog10K consortium advances the understanding of demography, genome function and architecture

Meadows, Jennifer; Kidd, Jeffrey M.; Wang, Guo-Dong; Parker, Heidi G. et al.

Part of Genome Biology, 2023

• DOI for Genome sequencing of 2000 canids by the Dog10K consortium advances the understanding of demography, genome function and architecture
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Evolutionary constraint and innovation across hundreds of placental mammals

Christmas, Matthew; Kaplow, Irene M.; Genereux, Diane P.; Dong, Michael X. et al.

Part of Science, 2023

• DOI for Evolutionary constraint and innovation across hundreds of placental mammals

Chiropterans Are a Hotspot for Horizontal Transfer of DNA Transposons in Mammalia

Paulat, Nicole S.; Storer, Jessica M.; Moreno-Santillan, Diana D.; Osmanski, Austin B. et al.

Part of Molecular biology and evolution, 2023

• DOI for Chiropterans Are a Hotspot for Horizontal Transfer of DNA Transposons in Mammalia
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A genomic timescale for placental mammal evolution

Foley, Nicole M.; Mason, Victor C.; Harris, Andrew J.; Bredemeyer, Kevin R. et al.

Part of Science, p. 365-+, 2023

• DOI for A genomic timescale for placental mammal evolution

The contribution of historical processes to contemporary extinction risk in placental mammals

Wilder, Aryn P.; Supple, Megan A.; Subramanian, Ayshwarya; Mudide, Anish et al.

Part of Science, 2023

• DOI for The contribution of historical processes to contemporary extinction risk in placental mammals

PIK3CA is recurrently mutated in canine mammary tumors, similarly to in human mammary neoplasia

Arendt, Maja Louise; Sakthikumar, Sharadha; Melin, Malin; Elvers, Ingegerd et al.

Part of Scientific Reports, 2023

• DOI for PIK3CA is recurrently mutated in canine mammary tumors, similarly to in human mammary neoplasia
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Identification and Functional Characterization of a Novel Susceptibility Locus for Small Vessel Vasculitis with MPO-ANCA

Dahlqvist, Johanna; Ekman, Diana; Sennblad, Bengt; Kozyrev, Sergey V. et al.

Part of Rheumatology, p. 3461-3470, 2022

• DOI for Identification and Functional Characterization of a Novel Susceptibility Locus for Small Vessel Vasculitis with MPO-ANCA
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Strong Association of Combined Genetic Deficiencies in the Classical Complement Pathway With Risk of Systemic Lupus Erythematosus and Primary Sjögren's Syndrome

Lundtoft, Christian; Sjöwall, Christopher; Rantapää‐Dahlqvist, Solbritt; Bengtsson, Anders A. et al.

Part of Arthritis & Rheumatology, p. 1842-1850, 2022

• DOI for Strong Association of Combined Genetic Deficiencies in the Classical Complement Pathway With Risk of Systemic Lupus Erythematosus and Primary Sjögren's Syndrome
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Complement C4 Copy Number Variation is Linked to SSA/Ro and SSB/La Autoantibodies in Systemic Inflammatory Autoimmune Diseases

Lundtoft, Christian; Pucholt, Pascal; Martin, Myriam; Bianchi, Matteo et al.

Part of Arthritis & Rheumatology, p. 1440-1450, 2022

• DOI for Complement C4 Copy Number Variation is Linked to SSA/Ro and SSB/La Autoantibodies in Systemic Inflammatory Autoimmune Diseases
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Mer-tyrosine kinase: a novel susceptibility gene for SLE related end-stage renal disease

Yavuz, Sule; Pucholt, Pascal; Sandling, Johanna K.; Bianchi, Matteo et al.

Part of Lupus Science and Medicine, 2022

• DOI for Mer-tyrosine kinase: a novel susceptibility gene for SLE related end-stage renal disease
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Contribution of rare genetic variation to disease susceptibility in a large Scandinavian myositis cohort

Bianchi, Matteo; Kozyrev, Sergey V.; Notarnicola, Antonella; Hultin-Rosenberg, Lina et al.

Part of Arthritis & Rheumatology, p. 342-352, 2022

• DOI for Contribution of rare genetic variation to disease susceptibility in a large Scandinavian myositis cohort
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Allele frequency spectrum of known ankylosing spondylitis associated variants in a Swedish population

Mathioudaki, Argyri; Nordin, Jessika; Kastbom, A.; Söderkvist, P. et al.

Part of Scandinavian Journal of Rheumatology, p. 21-24, 2022

• DOI for Allele frequency spectrum of known ankylosing spondylitis associated variants in a Swedish population
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Evolution of the ancestral mammalian karyotype and syntenic regions

Damas, Joana; Corbo, Marco; Kim, Jaebum; Turner-Maier, Jason et al.

Part of Proceedings of the National Academy of Sciences of the United States of America, 2022

• DOI for Evolution of the ancestral mammalian karyotype and syntenic regions
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The Antarctic Weddell seal genome reveals evidence of selection on cardiovascular phenotype and lipid handling

Noh, Hyun Ji; Turner-Maier, Jason; Schulberg, S. Anne; Fitzgerald, Michael L. et al.

Part of Communications Biology, 2022

• DOI for The Antarctic Weddell seal genome reveals evidence of selection on cardiovascular phenotype and lipid handling
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Canine Oral Melanoma Genomic and Transcriptomic Study Defines Two Molecular Subgroups with Different Therapeutical Targets

Prouteau, Anais; Mottier, Stephanie; Primot, Aline; Cadieu, Edouard et al.

Part of Cancers, p. 276, 2022

• DOI for Canine Oral Melanoma Genomic and Transcriptomic Study Defines Two Molecular Subgroups with Different Therapeutical Targets
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Why sequence all eukaryotes?

Blaxter, Mark; Archibald, John M.; Childers, Anna K.; Coddington, Jonathan A. et al.

Part of Proceedings of the National Academy of Sciences of the United States of America, 2022

• DOI for Why sequence all eukaryotes?
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Bayesian model and selection signature analyses reveal risk factors for canine atopic dermatitis

Tengvall, Katarina; Sundström, Elisabeth; Wang, Chao; Bergvall, Kerstin et al.

Part of Communications Biology, 2022

• DOI for Bayesian model and selection signature analyses reveal risk factors for canine atopic dermatitis
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Standards recommendations for the Earth BioGenome Project

Lawniczak, Mara K. N.; Durbin, Richard; Flicek, Paul; Lindblad-Toh, Kerstin et al.

Part of Proceedings of the National Academy of Sciences of the United States of America, 2022

• DOI for Standards recommendations for the Earth BioGenome Project
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The Earth BioGenome Project 2020: Starting the clock

Lewin, Harris A.; Richards, Stephen; Aiden, Erez Lieberman; Allende, Miguel L. et al.

Part of Proceedings of the National Academy of Sciences of the United States of America, 2022

• DOI for The Earth BioGenome Project 2020: Starting the clock
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Molecular pathways in patients with systemic lupus erythematosus revealed by gene-centred DNA sequencing

Sandling, Johanna K.; Pucholt, Pascal; Hultin-Rosenberg, Lina; Farias, Fabiana H. G. et al.

Part of Annals of the Rheumatic Diseases, p. 109-117, 2021

• DOI for Molecular pathways in patients with systemic lupus erythematosus revealed by gene-centred DNA sequencing
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Genetic and clinical basis for two distinct subtypes of primary Sjögren's syndrome

Thorlacius, Guðný Ella; Hultin-Rosenberg, Lina; Sandling, Johanna K.; Bianchi, Matteo et al.

Part of Rheumatology, p. 837-848, 2021

• DOI for Genetic and clinical basis for two distinct subtypes of primary Sjögren's syndrome
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Toll-like receptors revisited: a possible role for TLR1 in lupus nephritis

Yavuz, Sule; Bianchi, Matteo; Kozyrev, Sergey; Bolin, Karin et al.

Part of Annals of the Rheumatic Diseases, p. 404-406, 2021

• DOI for Toll-like receptors revisited: a possible role for TLR1 in lupus nephritis
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The genetic consequences of dog breed formation-Accumulation of deleterious genetic variation and fixation of mutations associated with myxomatous mitral valve disease in cavalier King Charles spaniels

Axelsson, Erik; Ljungvall, Ingrid; Bhoumik, Priyasma; Conn, Laura Bas et al.

Part of PLOS Genetics, 2021

• DOI for The genetic consequences of dog breed formation-Accumulation of deleterious genetic variation and fixation of mutations associated with myxomatous mitral valve disease in cavalier King Charles spaniels
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A novel canine reference genome resolves genomic architecture and uncovers transcript complexity

Wang, Chao; Wallerman, Ola; Arendt, Maja-Louise; Sundström, Elisabeth et al.

Part of Communications Biology, 2021

• DOI for A novel canine reference genome resolves genomic architecture and uncovers transcript complexity
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The ABCC4 gene is associated with pyometra in golden retriever dogs

Arendt, Maja Louise; Ambrosen, Aime; Fall, Tove; Kierczak, Marcin et al.

Part of Scientific Reports, 2021

• DOI for The ABCC4 gene is associated with pyometra in golden retriever dogs
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Genome-Wide Analyses for Osteosarcoma in Leonberger Dogs Reveal the CDKN2A/B Gene Locus as a Major Risk Locus

Letko, Anna; Minor, Katie M.; Norton, Elaine M.; Marinescu, Voichita et al.

Part of Genes, 2021

• DOI for Genome-Wide Analyses for Osteosarcoma in Leonberger Dogs Reveal the CDKN2A/B Gene Locus as a Major Risk Locus
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Association of Protective HLA-A With HLA-B∗27 Positive Ankylosing Spondylitis

Nordin, Jessika; Pettersson, Mats; Hultin Rosenberg, Lina; Mathioudaki, Argyri et al.

Part of Frontiers in Genetics, 2021

• DOI for Association of Protective HLA-A With HLA-B∗27 Positive Ankylosing Spondylitis
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How to make a rodent giant: Genomic basis and tradeoffs of gigantism in the capybara, the world's largest rodent

Herrera-Álvarez, Santiago; Karlsson, Elinor; Ryder, Oliver A; Lindblad-Toh, Kerstin et al.

Part of Molecular biology and evolution, p. 1715-1730, 2021

• DOI for How to make a rodent giant: Genomic basis and tradeoffs of gigantism in the capybara, the world's largest rodent
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3D genomics across the tree of life reveals condensin II as a determinant of architecture type

Hoencamp, Claire; Dudchenko, Olga; Elbatsh, Ahmed M. O.; Brahmachari, Sumitabha et al.

Part of Science, p. 984-989, 2021

• DOI for 3D genomics across the tree of life reveals condensin II as a determinant of architecture type

Roan, ticked and clear coat patterns in the canine are associated with three haplotypes near usherin on CFA38

Brancalion, L.; Haase, B.; Mazrier, H.; Willet, C. E. et al.

Part of Animal Genetics, p. 198-207, 2021

• DOI for Roan, ticked and clear coat patterns in the canine are associated with three haplotypes near usherin on CFA38
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Genomically Complex Human Angiosarcoma and Canine Hemangiosarcoma Establish Convergent Angiogenic Transcriptional Programs Driven by Novel Gene Fusions

Kim, Jong Hyuk; Megquier, Kate; Thomas, Rachael; Sarver, Aaron L. et al.

Part of Molecular Cancer Research, p. 847-861, 2021

• DOI for Genomically Complex Human Angiosarcoma and Canine Hemangiosarcoma Establish Convergent Angiogenic Transcriptional Programs Driven by Novel Gene Fusions

SweHLA: the high confidence HLA typing bio-resource drawn from 1000 Swedish genomes

Nordin, Jessika; Ameur, Adam; Lindblad-Toh, Kerstin; Gyllensten, Ulf et al.

Part of European Journal of Human Genetics, p. 627-635, 2020

• DOI for SweHLA: the high confidence HLA typing bio-resource drawn from 1000 Swedish genomes
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Nordic OCD & Related Disorders Consortium: Rationale, design, and methods.

Mataix-Cols, David; Hansen, Bjarne; Mattheisen, Manuel; Karlsson, Elinor K et al.

Part of American Journal of Medical Genetics Part B, p. 38-50, 2020

• DOI for Nordic OCD & Related Disorders Consortium: Rationale, design, and methods.

Transcriptomes from German shepherd dogs reveal differences in immune activity between atopic dermatitis affected and control skin

Tengvall, Katarina; Bergvall, K; Olsson, M; Ardesjö-Lundgren, Brita et al.

Part of Immunogenetics, p. 315-323, 2020

• DOI for Transcriptomes from German shepherd dogs reveal differences in immune activity between atopic dermatitis affected and control skin
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Progressive Cactus is a multiple-genome aligner for the thousand-genome era

Armstrong, Joel; Hickey, Glenn; Diekhans, Mark; Fiddes, Ian T. et al.

Part of Nature, p. 246-251, 2020

• DOI for Progressive Cactus is a multiple-genome aligner for the thousand-genome era
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A comparative genomics multitool for scientific discovery and conservation

Genereux, Diane P.; Serres, Aitor; Armstrong, Joel; Johnson, Jeremy et al.

Part of Nature, p. 240-245, 2020

• DOI for A comparative genomics multitool for scientific discovery and conservation
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Whole-genome genotyping and resequencing reveal the association of a deletion in the complex interferon alpha gene cluster with hypothyroidism in dogs

Bianchi, Matteo; Rafati, Nima; Karlsson, Åsa; Murén, Eva et al.

Part of BMC Genomics, 2020

• DOI for Whole-genome genotyping and resequencing reveal the association of a deletion in the complex interferon alpha gene cluster with hypothyroidism in dogs
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Targeted sequencing reveals the somatic mutation landscape in a Swedish breast cancer cohort

Mathioudaki, Argyri; Ljungström, Viktor; Melin, Malin; Arendt, Maja Louise et al.

Part of Scientific Reports, 2020

• DOI for Targeted sequencing reveals the somatic mutation landscape in a Swedish breast cancer cohort
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Thoracolumbar meningeal fibrosis in pugs

Rohdin, Cecilia; Ljungvall, Ingrid; Häggström, Jens; Leijon, Alexandra et al.

Part of Journal of Veterinary Internal Medicine, p. 797-807, 2020

• DOI for Thoracolumbar meningeal fibrosis in pugs
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Broad host range of SARS-CoV-2 predicted by comparative and structural analysis of ACE2 in vertebrates

Damas, Joana; Hughes, Graham M.; Keough, Kathleen C.; Painter, Corrie A. et al.

Part of Proceedings of the National Academy of Sciences of the United States of America, p. 22311-22322, 2020

• DOI for Broad host range of SARS-CoV-2 predicted by comparative and structural analysis of ACE2 in vertebrates
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Whole-genome sequencing of glioblastoma reveals enrichment of non-coding constraint mutations in known and novel genes

Sakthikumar, Sharadha; Roy, Ananya; Haseeb, Lulu; Pettersson, Mats E. et al.

Part of Genome Biology, 2020

• DOI for Whole-genome sequencing of glioblastoma reveals enrichment of non-coding constraint mutations in known and novel genes
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A rare regulatory variant in the MEF2D gene affects gene regulation and splicing and is associated with a SLE sub-phenotype in Swedish cohorts

Farias, Fabiana H. G.; Dahlqvist, Johanna; Kozyrev, Sergey V.; Leonard, Dag et al.

Part of European Journal of Human Genetics, p. 432-441, 2019

• DOI for A rare regulatory variant in the MEF2D gene affects gene regulation and splicing and is associated with a SLE sub-phenotype in Swedish cohorts
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Low guanylyl cyclase activity in Weddell seals: implications for peripheral vasoconstriction and perfusion of the brain during diving

Hindle, Allyson G.; Allen, Kaitlin N.; Batten, Annabelle J.; Huckastadt, Luis A. et al.

Part of American Journal of Physiology. Regulatory Integrative and Comparative Physiology, 2019

• DOI for Low guanylyl cyclase activity in Weddell seals: implications for peripheral vasoconstriction and perfusion of the brain during diving

A quantitative framework for characterizing the evolutionary history of mammalian gene expression

Chen, Jenny; Swofford, Ross; Johnson, Jeremy; Cummings, Beryl B. et al.

Part of Genome Research, p. 53-63, 2019

• DOI for A quantitative framework for characterizing the evolutionary history of mammalian gene expression
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Genome-Wide Analysis of Long Non-Coding RNA Profiles in Canine Oral Melanomas

Hitte, Christophe; Le Beguec, Celine; Cadieu, Edouard; Wucher, Valentin et al.

Part of Genes, 2019

• DOI for Genome-Wide Analysis of Long Non-Coding RNA Profiles in Canine Oral Melanomas
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BarkBase: Epigenomic Annotation of Canine Genomes

Megquier, Kate; Genereux, Diane P.; Hekman, Jessica; Swofford, Ross et al.

Part of Genes, 2019

• DOI for BarkBase: Epigenomic Annotation of Canine Genomes
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Aquatic Adaptation and Depleted Diversity: A Deep Dive into the Genomes of the Sea Otter and Giant Otter.

Beichman, Annabel C; Koepfli, Klaus-Peter; Li, Gang; Murphy, William et al.

Part of Molecular biology and evolution, p. 2631-2655, 2019

• DOI for Aquatic Adaptation and Depleted Diversity: A Deep Dive into the Genomes of the Sea Otter and Giant Otter.

Dog10K: an international sequencing effort to advance studies of canine domestication, phenotypes and health

Ostrander, Elaine A; Wang, Guo-Dong; Larson, Greger; vonHoldt, Bridgett M et al.

Part of National Science Review, p. 810-824, 2019

• DOI for Dog10K: an international sequencing effort to advance studies of canine domestication, phenotypes and health

A synonymous germline variant in a gene encoding a cell adhesion molecule is associated with cutaneous mast cell tumour development in Labrador and Golden Retrievers

Biasoli, Deborah; Compston-Garnett, Lara; Ricketts, Sally L.; Birand, Zeynep et al.

Part of PLOS Genetics, 2019

• DOI for A synonymous germline variant in a gene encoding a cell adhesion molecule is associated with cutaneous mast cell tumour development in Labrador and Golden Retrievers
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Solenodon genome reveals convergent evolution of venom in eulipotyphlan mammals.

Casewell, Nicholas R; Petras, Daniel; Card, Daren C; Suranse, Vivek et al.

Part of Proceedings of the National Academy of Sciences of the United States of America, p. 25745-25755, 2019

• DOI for Solenodon genome reveals convergent evolution of venom in eulipotyphlan mammals.
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Comparative Genomics Reveals Shared Mutational Landscape in Canine Hemangiosarcoma and Human Angiosarcoma

Megquier, Katherine; Turner-Maier, Jason; Swofford, Ross; Kim, Jong-Hyuk et al.

Part of Molecular Cancer Research, p. 2410-2421, 2019

• DOI for Comparative Genomics Reveals Shared Mutational Landscape in Canine Hemangiosarcoma and Human Angiosarcoma

Cytokine Autoantibody Screening in the Swedish Addison Registry Identifies Patients With Undiagnosed APS1

Eriksson, Daniel; Dalin, Frida; Eriksson, Gabriel Nordling; Landegren, Nils et al.

Part of Journal of Clinical Endocrinology and Metabolism, p. 179-186, 2018

• DOI for Cytokine Autoantibody Screening in the Swedish Addison Registry Identifies Patients With Undiagnosed APS1
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Genetic basis and clinical evidence for two variants of primary Sjögren's syndrome with distinct outcomes

Thorlacius, Gudny Ella; Hultin-Rosenberg, Lina; Sandling, Johanna K.; Imgenberg-Kreuz, Juliana et al.

Part of Clinical and Experimental Rheumatology, 2018

The risk allele A of rs200395694 associated with SLE in Swedish patients affects on MEF2D gene regulation and alternative splicing

Abramov, Sergei; Kozyrev, Sergey V.; Farias, Fabiana H. G.; Dahlqvist, Johanna et al.

Part of Human Gene Therapy, 2018

SETD2 Is Recurrently Mutated in Whole-Exome Sequenced Canine Osteosarcoma

Sakthikumar, Sharadha; Elvers, Ingegerd; Kim, Jaegil; Arendt, Maja Louise et al.

Part of Cancer Research, p. 3421-3431, 2018

• DOI for SETD2 Is Recurrently Mutated in Whole-Exome Sequenced Canine Osteosarcoma

Common genetic variation in the autoimmune regulator (AIRE) locus is associated with autoimmune Addison's disease in Sweden

Eriksson, Daniel; Bianchi, Matteo; Landegren, Nils; Dalin, Frida et al.

Part of Scientific Reports, 2018

• DOI for Common genetic variation in the autoimmune regulator (AIRE) locus is associated with autoimmune Addison's disease in Sweden
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ILF2 and ILF3 are autoantigens in canine systemic autoimmune disease

Bremer, Hanna D.; Landegren, Nils; Sjöberg, Ronald; Hallgren, Åsa et al.

Part of Scientific Reports, 2018

• DOI for ILF2 and ILF3 are autoantigens in canine systemic autoimmune disease
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Presence of thoracic and lumbar vertebral malformations in pugs with and without chronic neurological deficits

Rohdin, C.; Haggstrom, J.; Ljungvall, I.; Lee, H. Nyman et al.

Part of The Veterinary Journal, p. 24-30, 2018

• DOI for Presence of thoracic and lumbar vertebral malformations in pugs with and without chronic neurological deficits

A comprehensive genomic history of extinct and living elephants

Palkopoulou, Eleftheria; Lipson, Mark; Mallick, Swapan; Nielsen, Svend et al.

Part of Proceedings of the National Academy of Sciences of the United States of America, 2018

• DOI for A comprehensive genomic history of extinct and living elephants

High prevalence of gait abnormalities in pugs

Rohdin, Cecilia; Jäderlund, Karin Hultin; Ljungvall, Ingrid; Lindblad-Toh, Kerstin et al.

Part of The Veterinary Record, 2018

• DOI for High prevalence of gait abnormalities in pugs
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An exome sequencing based approach for genome-wide association studies in the dog

Broeckx, Bart J. G.; Derrien, Thomas; Mottier, Stephanie; Wucher, Valentin et al.

Part of Scientific Reports, 2017

• DOI for An exome sequencing based approach for genome-wide association studies in the dog
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Integrating evolutionary and regulatory information with multispecies approach implicates genes and pathways in obsessive-compulsive disorder

Noh, Hyun Ji; Tang, Ruqi; Flannick, Jason; O'Dushlaine, Colm et al.

Part of Nature Communications, 2017

• DOI for Integrating evolutionary and regulatory information with multispecies approach implicates genes and pathways in obsessive-compulsive disorder
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Comparison of cellular location and expression of Plakophilin-2 in epidermal cells from nonlesional atopic skin and healthy skin in German shepherd dogs

Ardesjö-Lundgren, Brita; Tengvall, Katarina; Bergvall, Kerstin; Farias, Fabiana H. G. et al.

Part of Veterinary dermatology (Print), p. 377-e88, 2017

• DOI for Comparison of cellular location and expression of Plakophilin-2 in epidermal cells from nonlesional atopic skin and healthy skin in German shepherd dogs
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Biovupsych: Electronic Medical Record-Based Identification of Dna Samples for Disorders Under-Represented n The'Pgc

Soda, Takahiro; Crowley, James; Breen, Gerome; Bulik, Cynthia et al.

Part of European Neuropsychopharmacology, 2017

Interactions between CXCR4 and CXCL12 promote cell migration and invasion of canine hemangiosarcoma

Im, K S; Graef, A J; Breen, M; Lindblad-Toh, Kerstin et al.

Part of Veterinary and Comparative Oncology, p. 315-327, 2017

• DOI for Interactions between CXCR4 and CXCL12 promote cell migration and invasion of canine hemangiosarcoma

Safe and Effective Sarcoma Therapy through Bispecific Targeting of EGFR and uPAR.

Borgatti, Antonella; Koopmeiners, Joseph S; Sarver, Aaron L; Winter, Amber L et al.

Part of Molecular Cancer Therapeutics, p. 956-965, 2017

• DOI for Safe and Effective Sarcoma Therapy through Bispecific Targeting of EGFR and uPAR.

FEELnc: a tool for long non-coding RNA annotation and its application to the dog transcriptome

Wucher, Valentin; Legeai, Fabrice; Hédan, Benoît; Rizk, Guillaume et al.

Part of Nucleic Acids Research, 2017

• DOI for FEELnc: a tool for long non-coding RNA annotation and its application to the dog transcriptome
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Constitutive activation of alternative nuclear factor kappa B pathway in canine diffuse large B-cell lymphoma contributes to tumor cell survival and is a target of new adjuvant therapies

Seelig, Davis M; Ito, Daisuke; Forster, Colleen L; Yoon, Una A et al.

Part of Leukemia and Lymphoma, p. 1702-1710, 2017

• DOI for Constitutive activation of alternative nuclear factor kappa B pathway in canine diffuse large B-cell lymphoma contributes to tumor cell survival and is a target of new adjuvant therapies

The spotted gar genome illuminates vertebrate evolution and facilitates human-teleost comparisons

Braasch, Ingo; Gehrke, Andrew R.; Smith, Jeramiah J.; Kawasaki, Kazuhiko et al.

Part of Nature Genetics, p. 427-437, 2016

• DOI for The spotted gar genome illuminates vertebrate evolution and facilitates human-teleost comparisons
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Absolute quantification reveals the stable transmission of a high copy number variant linked to autoinflammatory disease

Olsson, M.; Kierczak, Marcin; Karlsson, Åsa; Jablonska, Jagoda et al.

Part of BMC Genomics, 2016

• DOI for Absolute quantification reveals the stable transmission of a high copy number variant linked to autoinflammatory disease
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An Improved microRNA Annotation of the Canine Genome

Penso-Dolfin, Luca; Swofford, Ross; Johnson, Jeremy; Alfoldi, Jessica et al.

Part of PLOS ONE, 2016

• DOI for An Improved microRNA Annotation of the Canine Genome
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Allele-specific transcription factor binding to common and rare variants associated with disease and gene expression

Cavalli, Marco; Pan, Gang; Nord, Helena; Wallerman, Ola et al.

Part of Human Genetics, p. 485-497, 2016

• DOI for Allele-specific transcription factor binding to common and rare variants associated with disease and gene expression
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Genome-Wide Analysis Identifies Germ-Line Risk Factors Associated with Canine Mammary Tumours

Melin, Malin; Rivera, Patricio; Arendt, Maja; Elvers, Ingegerd et al.

Part of PLOS Genetics, 2016

• DOI for Genome-Wide Analysis Identifies Germ-Line Risk Factors Associated with Canine Mammary Tumours
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Utilizing the Dog Genome in the Search for Novel Candidate Genes Involved in Glioma Development-Genome Wide Association Mapping followed by Targeted Massive Parallel Sequencing Identifies a Strongly Associated Locus

Truve, Katarina; Dickinson, Peter; Xiong, Anqi; York, Daniel et al.

Part of PLOS Genetics, 2016

• DOI for Utilizing the Dog Genome in the Search for Novel Candidate Genes Involved in Glioma Development-Genome Wide Association Mapping followed by Targeted Massive Parallel Sequencing Identifies a Strongly Associated Locus
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Multiple regulatory variants located in cell type-specific enhancers within the PKP2 locus form major risk and protective haplotypes for canine atopic dermatitis in German shepherd dogs

Tengvall, Katarina; Kozyrev, Sergey; Kierczak, Marcin; Bergvall, Kerstin et al.

Part of BMC Genetics, 2016

• DOI for Multiple regulatory variants located in cell type-specific enhancers within the PKP2 locus form major risk and protective haplotypes for canine atopic dermatitis in German shepherd dogs
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Regulatory mutations in TBX3 disrupt asymmetric hair pigmentation underlying Dun camouflage colour in horses

Imsland, Freyja; McGowan, Kelly; Rubin, Carl-Johan; Henegar, Corneliu et al.

Part of Nature Genetics, p. 152-158, 2016

• DOI for Regulatory mutations in TBX3 disrupt asymmetric hair pigmentation underlying Dun camouflage colour in horses

Extended exome sequencing identifies BACH2 as a novel major risk locus for Addison's disease

Eriksson, D.; Bianchi, Matteo; Landegren, Nils; Nordin, Jessika et al.

Part of Journal of Internal Medicine, p. 595-608, 2016

• DOI for Extended exome sequencing identifies BACH2 as a novel major risk locus for Addison's disease
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Variants within the SP110 nuclear body protein modify risk of canine degenerative myelopathy

Ivansson, Emma L.; Megquier, Kate; Kozyrev, Sergey V.; Murén, Eva et al.

Part of Proceedings of the National Academy of Sciences of the United States of America, 2016

• DOI for Variants within the SP110 nuclear body protein modify risk of canine degenerative myelopathy

A Deletion in the Canine POMC Gene Is Associated with Weight and Appetite in Obesity-Prone Labrador Retriever Dogs

Raffan, Eleanor; Dennis, Rowena J.; O'Donovan, Conor J.; Becker, Julia M. et al.

Part of Cell Metabolism, p. 893-900, 2016

• DOI for A Deletion in the Canine POMC Gene Is Associated with Weight and Appetite in Obesity-Prone Labrador Retriever Dogs
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Effect of Breed on Plasma Endothelin-1 Concentration, Plasma Renin Activity, and Serum Cortisol Concentration in Healthy Dogs

Höglund, K.; Lequarre, A. -S; Ljungvall, I.; Mc Entee, K. et al.

Part of Journal of Veterinary Internal Medicine, p. 566-573, 2016

• DOI for Effect of Breed on Plasma Endothelin-1 Concentration, Plasma Renin Activity, and Serum Cortisol Concentration in Healthy Dogs
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Genome-Wide Analyses Suggest Mechanisms Involving Early B-cell Development in Canine IgA Deficiency

Olsson, Mia; Tengvall, Katarina; Frankowiack, Marcel; Kierczak, Marcin et al.

Part of PLOS ONE, 2015

• DOI for Genome-Wide Analyses Suggest Mechanisms Involving Early B-cell Development in Canine IgA Deficiency
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Exome sequencing of lymphomas from three dog breeds reveals somatic mutation patterns reflecting genetic background

Elvers, Ingegerd; Turner-Maier, Jason; Swofford, Ross; Koltookian, Michele et al.

Part of Genome Research, p. 1634-1645, 2015

• DOI for Exome sequencing of lymphomas from three dog breeds reveals somatic mutation patterns reflecting genetic background
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Improved canine exome designs, featuring ncRNAs and increased coverage of protein coding genes

Broeckx, Bart J. G.; Hitte, Christophe; Coopman, Frank; Verhoeven, Geert E. C. et al.

Part of Scientific Reports, 2015

• DOI for Improved canine exome designs, featuring ncRNAs and increased coverage of protein coding genes
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cgmisc: Enhanced Genome-wide Association Analyses and Visualisation

Kierczak, Marcin; Jablonska, Jagoda; Forsberg, S. K.; Bianchi, Matteo et al.

Part of Bioinformatics, p. 3830-3831, 2015

• DOI for cgmisc: Enhanced Genome-wide Association Analyses and Visualisation
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Multiple Changes of Gene Expression and Function Reveal Genomic and Phenotypic Complexity in SLE-like Disease

Wilbe, Maria; Kozyrev, Sergey V.; Farias, Fabiana H. G.; Bremer, Hanna D. et al.

Part of PLOS Genetics, 2015

• DOI for Multiple Changes of Gene Expression and Function Reveal Genomic and Phenotypic Complexity in SLE-like Disease
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Genome-Wide Association Study of Golden Retrievers Identifies Germ-Line Risk Factors Predisposing to Mast Cell Tumours

Arendt, Maja Louise; Melin, Malin; Tonomura, Noriko; Koltookian, Michele et al.

Part of PLOS Genetics, 2015

• DOI for Genome-Wide Association Study of Golden Retrievers Identifies Germ-Line Risk Factors Predisposing to Mast Cell Tumours
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Convergent evolution of the genomes of marine mammals

Foote, Andrew D.; Liu, Yue; Thomas, Gregg W. C.; Vinar, Tomas et al.

Part of Nature Genetics, p. 272-275, 2015

• DOI for Convergent evolution of the genomes of marine mammals

Genome-wide Association Study Identifies Shared Risk Loci Common to Two Malignancies in Golden Retrievers

Tonomura, Noriko; Elvers, Ingegerd; Thomas, Rachael; Megquier, Kate et al.

Part of PLOS Genetics, 2015

• DOI for Genome-wide Association Study Identifies Shared Risk Loci Common to Two Malignancies in Golden Retrievers
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Linked genetic variants on chromosome 10 control ear morphology and body mass among dog breeds

Webster, Matthew T.; Kamgari, Nona; Perloski, Michele; Höppner, Marc P. et al.

Part of BMC Genomics, 2015

• DOI for Linked genetic variants on chromosome 10 control ear morphology and body mass among dog breeds
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Jagged 1 Rescues the Duchenne Muscular Dystrophy Phenotype

Vieira, Natassia M.; Elvers, Ingegerd; Alexander, Matthew S.; Moreira, Yuri B. et al.

Part of Cell, p. 1204-1213, 2015

• DOI for Jagged 1 Rescues the Duchenne Muscular Dystrophy Phenotype

The Shepherds' Tale: A Genome-Wide Study across 9 Dog Breeds Implicates Two Loci in the Regulation of Fructosamine Serum Concentration in Belgian Shepherds

Forsberg, Simon K. G.; Kierczak, Marcin; Ljungvall, Ingrid; Merveille, Anne-Christine et al.

Part of PLOS ONE, 2015

• DOI for The Shepherds' Tale: A Genome-Wide Study across 9 Dog Breeds Implicates Two Loci in the Regulation of Fructosamine Serum Concentration in Belgian Shepherds
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Genomic profiling reveals extensive heterogeneity in somatic DNA copy number aberrations of canine hemangiosarcoma

Thomas, Rachael; Borst, Luke; Rotroff, Daniel; Motsinger-Reif, Alison et al.

Part of Chromosome Research, p. 305-319, 2014

• DOI for Genomic profiling reveals extensive heterogeneity in somatic DNA copy number aberrations of canine hemangiosarcoma

High-Throughput Sequencing of 219 Candidate Genes for Identification of SLE-Associated Risk Variants

Farias, Fabiana; Wilbe, Maria; Dahlqvist, Johanna; Leonard, Dag et al.

Part of Arthritis & Rheumatology, 2014

Amylase activity is associated with AMY2B copy numbers in dog: implications for dog domestication, diet and diabetes

Arendt, Maja; Fall, Tove; Lindblad-Toh, Kerstin; Axelsson, Erik

Part of Animal Genetics, p. 716-722, 2014

• DOI for Amylase activity is associated with AMY2B copy numbers in dog: implications for dog domestication, diet and diabetes

Rabbit genome analysis reveals a polygenic basis for phenotypic change during domestication

Carneiro, Miguel; Rubin, Carl-Johan; Di Palma, Federica; Albert, Frank W. et al.

Part of Science, p. 1074-1079, 2014

• DOI for Rabbit genome analysis reveals a polygenic basis for phenotypic change during domestication

Canine Hereditary Ataxia in Old English Sheepdogs and Gordon Setters Is Associated with a Defect in the Autophagy Gene Encoding RAB24

Agler, Caryline; Nielsen, Dahlia M.; Urkasemsin, Ganokon; Singleton, Andrew et al.

Part of PLOS Genetics, 2014

• DOI for Canine Hereditary Ataxia in Old English Sheepdogs and Gordon Setters Is Associated with a Defect in the Autophagy Gene Encoding RAB24
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Genome-wide copy number variant discovery in dogs using the CanineHD genotyping array

Molin, Anna-Maja; Berglund, Jonas; Webster, Matthew T.; Lindblad-Toh, Kerstin

Part of BMC Genomics, p. 210, 2014

• DOI for Genome-wide copy number variant discovery in dogs using the CanineHD genotyping array
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A Simple Repeat Polymorphism in the MITF-M Promoter Is a Key Regulator of White Spotting in Dogs

Baranowska Körberg, Izabella; Sundström, Elisabeth; Meadows, Jennifer R. S.; Pielberg, Gerli Rosengren et al.

Part of PLOS ONE, 2014

• DOI for A Simple Repeat Polymorphism in the MITF-M Promoter Is a Key Regulator of White Spotting in Dogs
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The dog as a genetic model for immunoglobulin A (IgA) deficiency: Identification of several breeds with low serum IgA concentrations

Olsson, Mia; Frankowiack, Marcel; Tengvall, Katarina; Roosje, Petra et al.

Part of Veterinary Immunology and Immunopathology, p. 255-259, 2014

• DOI for The dog as a genetic model for immunoglobulin A (IgA) deficiency: Identification of several breeds with low serum IgA concentrations

An Improved Canine Genome and a Comprehensive Catalogue of Coding Genes and Non-Coding Transcripts

Höppner, Marc P.; Lundquist, Andrew; Pirun, Mono; Meadows, Jennifer R. S. et al.

Part of PLOS ONE, 2014

• DOI for An Improved Canine Genome and a Comprehensive Catalogue of Coding Genes and Non-Coding Transcripts
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Lack of evidence for a role of islet autoimmunity in the aetiology of canine diabetes mellitus

Ahlgren, Kerstin M; Fall, Tove; Landegren, Nils; Grimelius, Lars et al.

Part of PLOS ONE, 2014

• DOI for Lack of evidence for a role of islet autoimmunity in the aetiology of canine diabetes mellitus
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The draft genome sequence of the ferret (Mustela putorius furo) facilitates study of human respiratory disease

Peng, Xinxia; Alfoeldi, Jessica; Gori, Kevin; Eisfeld, Amie J. et al.

Part of Nature Biotechnology, p. 1250-U114, 2014

• DOI for The draft genome sequence of the ferret (Mustela putorius furo) facilitates study of human respiratory disease
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The genomic substrate for adaptive radiation in African cichlid fish

Brawand, David; Wagner, Catherine E.; Li, Yang I.; Malinsky, Milan et al.

Part of Nature, p. 375-381, 2014

• DOI for The genomic substrate for adaptive radiation in African cichlid fish

The Naked Mole Rat Genome Resource: facilitating analyses of cancer and longevity-related adaptations

Keane, Michael; Craig, Thomas; Alfoldi, Jessica; Berlin, Aaron M et al.

Part of Bioinformatics, p. 3558-3560, 2014

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Candidate genes and functional noncoding variants identified in a canine model of obsessive-compulsive disorder

Tang, Ruqi; Noh, Hyun Ji; Wang, Dongqing; Sigurdsson, Snaevar et al.

Part of Genome Biology, 2014

• DOI for Candidate genes and functional noncoding variants identified in a canine model of obsessive-compulsive disorder
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Breed Distribution of SOD1 Alleles Previously Associated with Canine Degenerative Myelopathy

Zeng, R.; Coates, J. R.; Johnson, G. C.; Hansen, L. et al.

Part of Journal of Veterinary Internal Medicine, p. 515-521, 2014

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Identification of Three Molecular and Functional Subtypes in Canine Hemangiosarcoma through Gene Expression Profiling and Progenitor Cell Characterization

Gorden, Brandi H.; Kim, Jong-Hyuk; Sarver, Aaron L.; Frantz, Aric M. et al.

Part of American Journal of Pathology, p. 985-995, 2014

• DOI for Identification of Three Molecular and Functional Subtypes in Canine Hemangiosarcoma through Gene Expression Profiling and Progenitor Cell Characterization

Breed Differences in Natriuretic Peptides in Healthy Dogs

Sjoestrand, K.; Wess, G.; Ljungvall, I.; Haggstrom, J. et al.

Part of Journal of Veterinary Internal Medicine, p. 451-457, 2014

• DOI for Breed Differences in Natriuretic Peptides in Healthy Dogs

Genome-Wide Analysis in German Shepherd Dogs Reveals Association of a Locus on CFA 27 with Atopic Dermatitis

Tengvall, Katarina; Kierczak, Marcin; Bergvall, Kerstin; Olsson, Mia et al.

Part of PLOS Genetics, 2013

• DOI for Genome-Wide Analysis in German Shepherd Dogs Reveals Association of a Locus on CFA 27 with Atopic Dermatitis
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Genome-wide analyses implicate 33 loci in heritable dog osteosarcoma, including regulatory variants near CDKN2A/B

Karlsson, Elinor K; Sigurdsson, Snaevar; Ivansson, Emma; Thomas, Rachael et al.

Part of Genome Biology, 2013

• DOI for Genome-wide analyses implicate 33 loci in heritable dog osteosarcoma, including regulatory variants near CDKN2A/B
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Unsupervised genome-wide recognition of local relationship patterns

Zamani, Neda; Russell, Pamela; Lantz, Henrik; Hoeppner, Marc et al.

Part of BMC Genomics, p. 347, 2013

• DOI for Unsupervised genome-wide recognition of local relationship patterns
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Genome reannotation of the lizard Anolis carolinensis based on 14 adult and embryonic deep transcriptomes

Eckalbar, Walter L.; Hutchins, Elizabeth D.; Markov, Glenn J.; Allen, April N. et al.

Part of BMC Genomics, p. 49, 2013

• DOI for Genome reannotation of the lizard Anolis carolinensis based on 14 adult and embryonic deep transcriptomes
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The ESR1 gene is associated with risk for canine mammary tumours

Borge, Kaja Sverdrup; Melin, Malin; Rivera, Patricio; Thoresen, Stein Istre et al.

Part of BMC Veterinary Research, p. 69, 2013

• DOI for The ESR1 gene is associated with risk for canine mammary tumours
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Thorough investigation of a canine autoinflammatory disease (AID) syndrome confirms one main risk factor and suggests a modifier locus for amyloidosis

Olsson, Mia; Tintle, Linda; Kierczak, Marcin; Perloski, Michele et al.

Part of PLOS ONE, 2013

• DOI for Thorough investigation of a canine autoinflammatory disease (AID) syndrome confirms one main risk factor and suggests a modifier locus for amyloidosis
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The genomic signature of dog domestication reveals adaptation to a starch-rich diet

Axelsson, Erik; Ratnakumar, Abhirami; Arendt, Maja Louise; Maqbool, Khurram et al.

Part of Nature, p. 360-364, 2013

• DOI for The genomic signature of dog domestication reveals adaptation to a starch-rich diet

Molecular Profiling Reveals Prognostically Significant Subtypes of Canine Lymphoma

Frantz, A M; Sarver, A L; Ito, D; Phang, T L et al.

Part of Veterinary pathology, p. 693-703, 2013

• DOI for Molecular Profiling Reveals Prognostically Significant Subtypes of Canine Lymphoma

Mutations causing medullary cystic kidney disease type 1 lie in a large VNTR in MUC1 missed by massively parallel sequencing

Kirby, Andrew; Gnirke, Andreas; Jaffe, David B.; Baresova, Veronika et al.

Part of Nature Genetics, p. 299-303, 2013

• DOI for Mutations causing medullary cystic kidney disease type 1 lie in a large VNTR in MUC1 missed by massively parallel sequencing

The African coelacanth genome provides insights into tetrapod evolution

Amemiya, Chris T.; Alfoeldi, Jessica; Lee, Alison P.; Fan, Shaohua et al.

Part of Nature, p. 311-316, 2013

• DOI for The African coelacanth genome provides insights into tetrapod evolution

IgA deficiency in wolves

Frankowiack, Marcel; Hellman, Lars; Zhao, Yaofeng; Arnemo, Jon M. et al.

Part of Developmental and Comparative Immunology, p. 180-184, 2013

• DOI for IgA deficiency in wolves

Comparative genomics as a tool to understand evolution and disease

Alfoeldi, Jessica; Lindblad-Toh, Kerstin

Part of Genome Research, p. 1063-1068, 2013

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Hyaluronic Acid is a Marker of Active Arthritis, but not Systemic Inflammation in Systemic Juvenile Idiopathic Arthritis

Hugle, B.; Olsson, M.; Fischer, N.; Herrmann, M. et al.

Part of Annals of the Rheumatic Diseases, p. 728-728, 2013

• DOI for Hyaluronic Acid is a Marker of Active Arthritis, but not Systemic Inflammation in Systemic Juvenile Idiopathic Arthritis

A splice site mutation in a gene encoding for PDK4, a mitochondrial protein, is associated with the development of dilated cardiomyopathy in the Doberman pinscher

Meurs, Kathryn M; Lahmers, Sunshine; Keene, Bruce W; White, Stephen N et al.

Part of Human Genetics, p. 1319-1325, 2012

• DOI for A splice site mutation in a gene encoding for PDK4, a mitochondrial protein, is associated with the development of dilated cardiomyopathy in the Doberman pinscher

A High Density SNP Array for the Domestic Horse and Extant Perissodactyla: Utility for Association Mapping, Genetic Diversity, and Phylogeny Studies

McCue, Molly E.; Bannasch, Danika L.; Petersen, Jessica L.; Gurr, Jessica et al.

Part of PLOS Genetics, 2012

• DOI for A High Density SNP Array for the Domestic Horse and Extant Perissodactyla: Utility for Association Mapping, Genetic Diversity, and Phylogeny Studies
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Copy number expansion of the STX17 duplication in melanoma tissue from Grey horses

Sundström, Elisabeth; Imsland, Freyja; Mikko, Sofia; Wade, Claire et al.

Part of BMC Genomics, p. 365, 2012

• DOI for Copy number expansion of the STX17 duplication in melanoma tissue from Grey horses

Convergent and divergent evolution of genomic imprinting in the marsupial Monodelphis domestica

Das, Radhika; Anderson, Nathan; Koran, MaryEllen I.; Weidman, Jennifer R. et al.

Part of BMC Genomics, p. 394, 2012

• DOI for Convergent and divergent evolution of genomic imprinting in the marsupial Monodelphis domestica
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Copy number expansion of the STX17 duplication in melanoma tissue from Grey horses

Sundström, Elisabeth; Imsland, Freyja; Mikko, Sofia; Wade, Claire et al.

Part of BMC Genomics, p. 365, 2012

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Two Loci on Chromosome 5 Are Associated with Serum IgE Levels in Labrador Retrievers

Owczarek-Lipska, Marta; Lauber, Béatrice; Molitor, Vivianne; Meury, Sabrina et al.

Part of PLOS ONE, 2012

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Rethinking dog domestication by integrating genetics, archeology, and biogeography

Larson, Greger; Karlsson, Elinor K; Perri, Angela; Webster, Matthew T et al.

Part of Proceedings of the National Academy of Sciences of the United States of America, p. 8878-8883, 2012

• DOI for Rethinking dog domestication by integrating genetics, archeology, and biogeography

The genomic basis of adaptive evolution in threespine sticklebacks

Jones, Felicity C.; Grabherr, Manfred G.; Chan, Yingguang Frank; Russell, Pamela et al.

Part of Nature, p. 55-61, 2012

• DOI for The genomic basis of adaptive evolution in threespine sticklebacks

Novel origins of copy number variation in the dog genome

Berglund, Jonas; Nevalainen, Elisa M; Molin, Anna-Maja; Perloski, Michele et al.

Part of Genome Biology, 2012

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Death of PRDM9 coincides with stabilization of the recombination landscape in the dog genome

Axelsson, Erik; Webster, Matthew T.; Ratnakumar, Abhirami; Ponting, Chris P. et al.

Part of Genome Research, p. 51-63, 2011

• DOI for Death of PRDM9 coincides with stabilization of the recombination landscape in the dog genome

Identification of genomic regions associated with phenotypic variation between dog breeds using selection mapping

Vaysse, Amaury; Ratnakumar, Abhirami; Derrien, Thomas; Axelsson, Erik et al.

Part of PLOS Genetics, 2011

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Comparison of buccal and blood-derived canine DNA, either native or whole genome amplified, for array-based genome-wide association studies

Rincon, Gonzalo; Tengvall, Katarina; Belanger, Janelle M; Lagoutte, Laetitia et al.

Part of BMC Research Notes, p. 226, 2011

• DOI for Comparison of buccal and blood-derived canine DNA, either native or whole genome amplified, for array-based genome-wide association studies

Exploiting Nucleotide Composition to Engineer Promoters

Grabherr, Manfred G.; Pontiller, Jens; Mauceli, Evan; Ernst, Wolfgang et al.

Part of PLoS One, 2011

• DOI for Exploiting Nucleotide Composition to Engineer Promoters

Refining tumor-associated aneuploidy through 'genomic recoding' of recurrent DNA copy number aberrations in 150 canine non-Hodgkin lymphomas

Thomas, Rachael; Seiser, Eric L.; Motsinger-Reif, Alison; Borst, Luke et al.

Part of Leukemia and Lymphoma, p. 1321-1335, 2011

• DOI for Refining tumor-associated aneuploidy through 'genomic recoding' of recurrent DNA copy number aberrations in 150 canine non-Hodgkin lymphomas

Molecular subtypes of osteosarcoma identified by reducing tumor heterogeneity through an interspecies comparative approach

Scott, Milcah C.; Sarver, Aaron L.; Gavin, Katherine J.; Thayanithy, Venugopal et al.

Part of Bone, p. 356-367, 2011

• DOI for Molecular subtypes of osteosarcoma identified by reducing tumor heterogeneity through an interspecies comparative approach

A Novel Unstable Duplication Upstream of HAS2 Predisposes to a Breed-Defining Skin Phenotype and a Periodic Fever Syndrome in Chinese Shar-Pei Dogs

Olsson, Mia; Meadows, Jennifer R. S.; Truve, Katarina; Pielberg, Gerli Rosengren et al.

Part of PLoS Genetics, 2011

• DOI for A Novel Unstable Duplication Upstream of HAS2 Predisposes to a Breed-Defining Skin Phenotype and a Periodic Fever Syndrome in Chinese Shar-Pei Dogs

Performance of Microarray and Liquid Based Capture Methods for Target Enrichment for Massively Parallel Sequencing and SNP Discovery

Kiialainen, Anna; Karlberg, Olof; Ahlford, Annika; Sigurdsson, Snaevar et al.

Part of PLoS ONE, 2011

• DOI for Performance of Microarray and Liquid Based Capture Methods for Target Enrichment for Massively Parallel Sequencing and SNP Discovery

A Frameshift Mutation in Golden Retriever Dogs with Progressive Retinal Atrophy Endorses SLC4A3 as a Candidate Gene for Human Retinal Degenerations

Downs, Louise M.; Wallin-Hakansson, Berit; Boursnell, Mike; Marklund, Stefan et al.

Part of PLoS one, 2011

• DOI for A Frameshift Mutation in Golden Retriever Dogs with Progressive Retinal Atrophy Endorses SLC4A3 as a Candidate Gene for Human Retinal Degenerations

The genome of the green anole lizard and a comparative analysis with birds and mammals

Alfoeldi, Jessica; Di Palma, Federica; Grabherr, Manfred; Williams, Christina et al.

Part of Nature, p. 587-591, 2011

• DOI for The genome of the green anole lizard and a comparative analysis with birds and mammals

Full-length transcriptome assembly from RNA-Seq data without a reference genome

Grabherr, Manfred G; Yassour, Moran; Haas, Brian J; Levin, Joshua Z et al.

Part of Nature Biotechnology, p. 644-652, 2011

• DOI for Full-length transcriptome assembly from RNA-Seq data without a reference genome

Three periods of regulatory innovation during vertebrate evolution

Lowe, Craig B; Kellis, Manolis; Siepel, Adam; Raney, Brian J et al.

Part of Science, p. 1019-1024, 2011

• DOI for Three periods of regulatory innovation during vertebrate evolution

A truncating mutation in ATP13A2 is responsible for adult-onset neuronal ceroid lipofuscinosis in Tibetan terriers

Farias, Fabiana H. G.; Zeng, Rong; Johnson, Gary S.; Wininger, Fred A. et al.

Part of Neurobiology of Disease, p. 468-474, 2011

• DOI for A truncating mutation in ATP13A2 is responsible for adult-onset neuronal ceroid lipofuscinosis in Tibetan terriers

Mutation discovery in mice by whole exome sequencing

Fairfield, Heather; Gilbert, Griffith J; Barter, Mary; Corrigan, Rebecca R et al.

Part of Genome Biology, 2011

• DOI for Mutation discovery in mice by whole exome sequencing

A high-resolution map of human evolutionary constraint using 29 mammals

Lindblad-Toh, Kerstin; Garber, Manuel; Zuk, Or; Lin, Michael F. et al.

Part of Nature, p. 476-482, 2011

• DOI for A high-resolution map of human evolutionary constraint using 29 mammals

LGI2 Truncation Causes a Remitting Focal Epilepsy in Dogs

Seppala, Eija H.; Jokinen, Tarja S.; Fukata, Masaki; Fukata, Yuko et al.

Part of PLoS Genetics, 2011

• DOI for LGI2 Truncation Causes a Remitting Focal Epilepsy in Dogs

Comparative physical maps derived from BAC end sequences of tilapia (Oreochromis niloticus).

Soler, Lucile; Conte, Matthew A; Katagiri, Takayuki; Howe, Aimee E et al.

Part of BMC Genomics, 2010

• DOI for Comparative physical maps derived from BAC end sequences of tilapia (Oreochromis niloticus).

Genome-wide synteny through highly sensitive sequence alignment: Satsuma

Grabherr, Manfred G; Russell, Pamela; Meyer, Miriah; Mauceli, Evan et al.

Part of Bioinformatics, p. 1145-1151, 2010

• DOI for Genome-wide synteny through highly sensitive sequence alignment: Satsuma

Whole genome resequencing reveals loci under selection during chicken domestication

Rubin, Carl-Johan; Zody, Michael C.; Eriksson, Jonas; Meadows, Jennifer et al.

Part of Nature, p. 587-591, 2010

• DOI for Whole genome resequencing reveals loci under selection during chicken domestication

High resolution mapping and positional cloning of ENU-induced mutations in the Rw region of mouse chromosome 5

Ching, Yung-Hao; Munroe, Robert J.; Moran, Jennifer L.; Barker, Anna K. et al.

Part of BMC Genetics, p. 106, 2010

• DOI for High resolution mapping and positional cloning of ENU-induced mutations in the Rw region of mouse chromosome 5

ZBED6: the birth of a new transcription factor in the common ancestor of placental mammals

Andersson, Leif; Andersson, Göran; Hjälm, Göran; Jiang, Lin et al.

Part of Transcription, p. 144-148, 2010

• DOI for ZBED6: the birth of a new transcription factor in the common ancestor of placental mammals

Fine-mapping and mutation analysis of TRPM1: a candidate gene for leopard complex (LP) spotting and congenital stationary night blindness in horses

Bellone, Rebecca R; Forsyth, George; Leeb, Tosso; Archer, Sheila et al.

Part of Briefings in Functional Genomics & Proteomics, p. 193-207, 2010

• DOI for Fine-mapping and mutation analysis of TRPM1: a candidate gene for leopard complex (LP) spotting and congenital stationary night blindness in horses

Diabetes Mellitus in Elkhounds Is Associated with Diestrus and Pregnancy

Fall, Tove; Hedhammar, A; Wallberg, A; Fall, N et al.

Part of Journal of Veterinary Internal Medicine, p. 1322-1328, 2010

• DOI for Diabetes Mellitus in Elkhounds Is Associated with Diestrus and Pregnancy
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Genome-wide association mapping identifies multiple loci for a canine SLE-related disease complex.

Wilbe, Maria; Jokinen, Päivi; Truvé, Katarina; Seppala, Eija H et al.

Part of Nature Genetics, p. 250-254, 2010

• DOI for Genome-wide association mapping identifies multiple loci for a canine SLE-related disease complex.

A canine chromosome 7 locus confers compulsive disorder susceptibility

Dodman, N. H.; Karlsson, E. K.; Moon-Fanelli, A.; Galdzicka, M. et al.

Part of Molecular Psychiatry, p. 8-10, 2010

• DOI for A canine chromosome 7 locus confers compulsive disorder susceptibility

Association of dopamine- and serotonin-related genes with canine aggression

Våge, J.; Wade, C.; Biagi, T.; Fatjó, J. et al.

Part of Genes, Brain and Behavior, p. 372-378, 2010

• DOI for Association of dopamine- and serotonin-related genes with canine aggression

Genome-wide association identifies a deletion in the 3' untranslated region of Striatin in a canine model of arrhythmogenic right ventricular cardiomyopathy

Meurs, Kathryn M.; Mauceli, Evan; Lahmers, Sunshine; Acland, Gregory M. et al.

Part of Human Genetics, p. 315-324, 2010

• DOI for Genome-wide association identifies a deletion in the 3' untranslated region of Striatin in a canine model of arrhythmogenic right ventricular cardiomyopathy

Localization of canine brachycephaly using an across breed mapping approach

Bannasch, Danika; Young, Amy; Myers, Jeffrey; Truvé, Katarina et al.

Part of PLoS ONE, 2010

• DOI for Localization of canine brachycephaly using an across breed mapping approach

A deletion in the N-myc downstream regulated gene 1 (NDRG1) gene in Greyhounds with polyneuropathy

Drögemüller, Cord; Becker, Doreen; Kessler, Barbara; Kemter, Elisabeth et al.

Part of PloS one, 2010

• DOI for A deletion in the N-myc downstream regulated gene 1 (NDRG1) gene in Greyhounds with polyneuropathy

Identification of the Bovine Arachnomelia Mutation by Massively Parallel Sequencing Implicates Sulfite Oxidase (SUOX) in Bone Development

Droegemueller, Cord; Tetens, Jens; Sigurdsson, Snaevar; Gentile, Arcangelo et al.

Part of PLoS Genetics, 2010

• DOI for Identification of the Bovine Arachnomelia Mutation by Massively Parallel Sequencing Implicates Sulfite Oxidase (SUOX) in Bone Development

DLA Class II Alleles Are Associated with Risk for Canine Symmetrical Lupoid Onychodystropy (SLO)

Wilbe, Maria; Ziener, Martine Lund; Aronsson, Anita; Harlos, Charlotte et al.

Part of PLoS ONE, 2010

• DOI for DLA Class II Alleles Are Associated with Risk for Canine Symmetrical Lupoid Onychodystropy (SLO)

Lineage-specific biology revealed by a finished genome assembly of the mouse

Church, Deanna M; Goodstadt, Leo; Hillier, Ladeana W; Zody, Michael C. et al.

Part of PLoS biology, 2009

• DOI for Lineage-specific biology revealed by a finished genome assembly of the mouse

ZBED6, a novel transcription factor derived from a domesticated DNA transposon regulates IGF2 expression and muscle growth

Markljung, Ellen; Jiang, Lin; Jaffe, Jacob D.; Mikkelsen, Tarjei S. et al.

Part of PLoS biology, 2009

• DOI for ZBED6, a novel transcription factor derived from a domesticated DNA transposon regulates IGF2 expression and muscle growth

Genome Sequence, Comparative Analysis, and Population Genetics of the Domestic Horse

Wade, C. M.; Giulotto, E.; Sigurdsson, Snaevar; Zoli, M. et al.

Part of Science, p. 865-867, 2009

• DOI for Genome Sequence, Comparative Analysis, and Population Genetics of the Domestic Horse

Mammary tumor development in dogs is associated with BRCA1 and BRCA2

Rivera, Patricio; Melin, Malin; Biagi, Tara; Fall, Tove et al.

Part of Cancer Research, p. 8770-8774, 2009

• DOI for Mammary tumor development in dogs is associated with BRCA1 and BRCA2

Genome-wide association analysis reveals a SOD1 mutation in canine degenerative myelopathy that resembles amyotrophic lateral sclerosis

Awano, Tomoyuki; Johnson, Gary S.; Wade, Claire M.; Katz, Martin L. et al.

Part of Proceedings of the National Academy of Sciences of the United States of America, p. 2794-2799, 2009

• DOI for Genome-wide association analysis reveals a SOD1 mutation in canine degenerative myelopathy that resembles amyotrophic lateral sclerosis

A population study of a mutation allele associated with cone-rod dystrophy in the standard wire-haired dachshund

Wiik, A. C.; Thoresen, S. I.; Wade, C; Lindblad-Toh, Kerstin et al.

Part of Animal Genetics, p. 572-574, 2009

• DOI for A population study of a mutation allele associated with cone-rod dystrophy in the standard wire-haired dachshund

Microarray-based cytogenetic profiling reveals recurrent and subtype-associated genomic copy number aberrations in feline sarcomas

Thomas, Rachael; Valli, Victor E; Ellis, Peter; Bell, Jerold et al.

Part of Chromosome Research, p. 987-1000, 2009

• DOI for Microarray-based cytogenetic profiling reveals recurrent and subtype-associated genomic copy number aberrations in feline sarcomas

Assisted assembly: how to improve a de novo genome assembly by using related species

Gnerre, Sante; Lander, Eric S; Lindblad-Toh, Kerstin; Jaffe, David B

Part of Genome Biology, 2009

• DOI for Assisted assembly: how to improve a de novo genome assembly by using related species

Identification of Repetitive Elements in the Genome of Oreochromis niloticus: Tilapia Repeat Masker

Shirak, Andrey; Grabherr, Manfred; Di Palma, Federica; Lindblad-Toh, Kerstin et al.

Part of Marine Biotechnology, p. 121-125, 2009

• DOI for Identification of Repetitive Elements in the Genome of Oreochromis niloticus: Tilapia Repeat Masker

A missense mutation in the SERPINH1 gene in Dachshunds with osteogenesis imperfecta

Drögemüller, Cord; Becker, Doreen; Brunner, Adrian; Haase, Bianca et al.

Part of PLoS genetics, 2009

• DOI for A missense mutation in the SERPINH1 gene in Dachshunds with osteogenesis imperfecta

A cis-acting regulatory mutation causes premature hair graying and susceptibility to melanoma in the horse

Pielberg, Gerli Rosengren; Golovko, Anna; Sundström, Elisabeth; Curik, Ino et al.

Part of Nature Genetics, p. 1004-1009, 2008

• DOI for A cis-acting regulatory mutation causes premature hair graying and susceptibility to melanoma in the horse

A mutation in hairless dogs implicates FOXI3 in ectodermal development

Drögemüller, Cord; Karlsson, Elinor K; Hytönen, Marjo K; Perloski, Michele et al.

Part of Science, p. 1462, 2008

• DOI for A mutation in hairless dogs implicates FOXI3 in ectodermal development

A deletion in nephronophthisis 4 (NPHP4) is associated with recessive cone-rod dystrophy in standard wire-haired dachshund

Wiik, Anne Caroline; Wade, Claire; Biagi, Tara; Ropstad, Ernst-Otto et al.

Part of Genome Research, p. 1415-21, 2008

• DOI for A deletion in nephronophthisis 4 (NPHP4) is associated with recessive cone-rod dystrophy in standard wire-haired dachshund

Sequencing the nuclear genome of the extinct woolly mammoth.

Miller, Webb; Drautz, Daniela I; Ratan, Aakrosh; Pusey, Barbara et al.

Part of Nature, p. 387-390, 2008

• DOI for Sequencing the nuclear genome of the extinct woolly mammoth.

Evaluation of the serotonergic genes htr1A, htr1B, htr2A, and slc6A4 in aggressive behavior of golden retriever dogs

van den Berg, L; Vos-Loohuis, M; Schilder, M B H; van Oost, B A et al.

Part of Behavior Genetics, p. 55-66, 2008

• DOI for Evaluation of the serotonergic genes htr1A, htr1B, htr2A, and slc6A4 in aggressive behavior of golden retriever dogs

A genome assembly-integrated dog 1 Mb BAC microarray: a cytogenetic resource for canine cancer studies and comparative genomic analysis.

Thomas, R; Duke, S E; Karlsson, E K; Evans, A et al.

Part of Cytogenetic and Genome Research, p. 110-121, 2008

• DOI for A genome assembly-integrated dog 1 Mb BAC microarray: a cytogenetic resource for canine cancer studies and comparative genomic analysis.

Patterns of molecular genetic variation among cat breeds.

Menotti-Raymond, Marilyn; David, Victor A; Pflueger, Solveig M; Lindblad-Toh, Kerstin et al.

Part of Genomics, p. 1-11, 2008

Evolution of genes and genomes on the Drosophila phylogeny

Clark, Andrew G.; Eisen, Michael B.; Smith, Douglas R.; Bergman, Casey M. et al.

Part of Nature, p. 203-218, 2007

• DOI for Evolution of genes and genomes on the Drosophila phylogeny

Analysis of a set of Australian northern brown bandicoot expressed sequence tags with comparison to the genome sequence of the South American grey short tailed opossum

Baker, Michelle L; Indiviglio, Sandra; Nyberg, April M; Rosenberg, George H et al.

Part of BMC Genomics, p. 50, 2007

• DOI for Analysis of a set of Australian northern brown bandicoot expressed sequence tags with comparison to the genome sequence of the South American grey short tailed opossum

Duplication of FGF3, FGF4, FGF19 and ORAOV1 causes hair ridge and predisposition to dermoid sinus in Ridgeback dogs

Salmon Hillbertz, Nicolette H. C.; Isaksson, Magnus; Karlsson, Elinor K.; Hellmén, Eva et al.

Part of Nature Genetics, p. 1318-1320, 2007

• DOI for Duplication of FGF3, FGF4, FGF19 and ORAOV1 causes hair ridge and predisposition to dermoid sinus in Ridgeback dogs

Efficient mapping of mendelian traits in dogs through genome-wide association

Karlsson, Elinor K.; Baranowska, Izabella; Wade, Claire M.; Salmon Hillbertz, Nicolette H. C. et al.

Part of Nature Genetics, p. 1321-1328, 2007

• DOI for Efficient mapping of mendelian traits in dogs through genome-wide association

28-Way vertebrate alignment and conservation track in the UCSC Genome Browser

Miller, Webb; Rosenbloom, Kate; Hardison, Ross C; Hou, Minmei et al.

Part of Genome Research, p. 1797-1808, 2007

• DOI for 28-Way vertebrate alignment and conservation track in the UCSC Genome Browser

Integrated cytogenetic BAC map of the genome of the gray, short-tailed opossum, Monodelphis domestica

Duke, S E; Samollow, P B; Mauceli, E; Lindblad-Toh, Kerstin et al.

Part of Chromosome Research, p. 361-370, 2007

• DOI for Integrated cytogenetic BAC map of the genome of the gray, short-tailed opossum, Monodelphis domestica

Distinguishing protein-coding and noncoding genes in the human genome

Clamp, Michele; Fry, Ben; Kamal, Mike; Xie, Xiaohui et al.

Part of Proceedings of the National Academy of Sciences of the United States of America, p. 19428-19433, 2007

• DOI for Distinguishing protein-coding and noncoding genes in the human genome

Genome of the marsupial Monodelphis domestica reveals innovation in non-coding sequences

Mikkelsen, Tarjei S; Wakefield, Matthew J; Aken, Bronwen; Amemiya, Chris T et al.

Part of Nature, p. 167-177, 2007

• DOI for Genome of the marsupial Monodelphis domestica reveals innovation in non-coding sequences

Analyses of deep mammalian sequence alignments and constraint predictions for 1% of the human genome

Margulies, Elliott H; Cooper, Gregory M; Asimenos, George; Thomas, Daryl J et al.

Part of Genome Research, p. 760-774, 2007

• DOI for Analyses of deep mammalian sequence alignments and constraint predictions for 1% of the human genome

A unique T cell receptor discovered in marsupials

Parra, Zuly E; Baker, Michelle L; Schwarz, Ryan S; Deakin, Janine E et al.

Part of Proceedings of the National Academy of Sciences of the United States of America, p. 9776-9781, 2007

• DOI for A unique T cell receptor discovered in marsupials

Initial sequence and comparative analysis of the cat genome

Pontius, Joan U; Mullikin, James C; Smith, Douglas R; Lindblad-Toh, Kerstin et al.

Part of Genome Research, p. 1675-1689, 2007

• DOI for Initial sequence and comparative analysis of the cat genome

Heart development in fibronectin-null mice is governed by a genetic modifier on chromosome four

Astrof, Sophie; Kirby, Andrew; Lindblad-Toh, Kerstin; Daly, Mark et al.

Part of Mechanisms of Development, p. 551-558, 2007

• DOI for Heart development in fibronectin-null mice is governed by a genetic modifier on chromosome four

Systematic discovery of regulatory motifs in conserved regions of the human genome, including thousands of CTCF insulator sites

Xie, Xiaohui; Mikkelsen, Tarjei S; Gnirke, Andreas; Lindblad-Toh, Kerstin et al.

Part of Proceedings of the National Academy of Sciences of the United States of America, p. 7145-7150, 2007

• DOI for Systematic discovery of regulatory motifs in conserved regions of the human genome, including thousands of CTCF insulator sites

Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project

Birney, Ewan; Stamatoyannopoulos, John A.; Dutta, Anindya; Guigó, Roderic et al.

Part of Nature, p. 799-816, 2007

• DOI for Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project

Genome sequence, comparative analysis and haplotype structure of the domestic dog.

Lindblad-Toh, Kerstin; Wade, Claire M; Mikkelsen, Tarjei S; Karlsson, Elinor K et al.

Part of Nature, p. 803-19, 2005

• DOI for Genome sequence, comparative analysis and haplotype structure of the domestic dog.

Spastic paraplegia, ataxia, mental retardation (SPAR): A novel genetic disorder

Hedera, P.; Rainier, S.; Zhao, X. P.; Schalling, M. et al.

Part of Neurology, p. 411-416, 2002

• DOI for Spastic paraplegia, ataxia, mental retardation (SPAR): A novel genetic disorder

Dominantly inherited familial myasthenia gravis as a separate genetic entity without involvement of defined candidate gene loci

Li, Fang-Yuan; Szobor, Albert; Croxen, Rebecca; Anselmo, Victoria et al.

Part of International Journal of Molecular Medicine, p. 289-294, 2001

• DOI for Dominantly inherited familial myasthenia gravis as a separate genetic entity without involvement of defined candidate gene loci

A cloning strategy for identification of genes containing trinucleotide repeat expansions

Yuan, Q.-P.; Lindblad-Toh, Kerstin; Zander, Cecilia; Burgess, C. et al.

Part of International Journal of Molecular Medicine, p. 427-431, 2001

• DOI for A cloning strategy for identification of genes containing trinucleotide repeat expansions

Genetic variation in the 5q31 cytokine gene cluster confers susceptibility to Crohn disease

Rioux, John D.; Daly, Mark J.; Silverberg, Mark S.; Lindblad, Kerstin et al.

Part of Nature Genetics, p. 223-228, 2001

• DOI for Genetic variation in the 5q31 cytokine gene cluster confers susceptibility to Crohn disease

Genetic survival analysis of age-at-onset of bipolar disorder: evidence for anticipation or cohort effect in families

Visscher, Peter M.; Yazdi, M. Hossein; Jackson, Alan D.; Schalling, Martin et al.

Part of Psychiatric Genetics, p. 129-137, 2001

• DOI for Genetic survival analysis of age-at-onset of bipolar disorder: evidence for anticipation or cohort effect in families

What animals can teach us about evolution, the human genome, and human disease

Lindblad-Toh, Kerstin

Part of Upsala Journal of Medical Sciences, p. 1-9, 2020

• DOI for What animals can teach us about evolution, the human genome, and human disease
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Dissecting evolution and disease using comparative vertebrate genomics

Meadows, Jennifer; Lindblad-Toh, Kerstin

Part of Nature reviews genetics, p. 624-636, 2017

• DOI for Dissecting evolution and disease using comparative vertebrate genomics

LUPA: A European initiative taking advantage of the canine genome architecture for unravelling complex disorders in both human and dogs

Lequarre, Anne-Sophie; Andersson, Leif; Andre, Catherine; Fredholm, Merete et al.

Part of The Veterinary Journal, p. 155-159, 2011

• DOI for LUPA: A European initiative taking advantage of the canine genome architecture for unravelling complex disorders in both human and dogs

Leader of the pack: gene mapping in dogs and other model organisms

Karlsson, Elinor K.; Lindblad-Toh, Kerstin

Part of Nature reviews genetics, p. 713-725, 2008

• DOI for Leader of the pack: gene mapping in dogs and other model organisms

Repeat Expansion Detection (RED) and the RED Cloning Strategy

Yuan, Qiu-Ping; Lindblad-Toh, Kerstin; Schalling, Martin

Part of Neurogenetics, p. 51-60, Humana Press, 2003

• DOI for Repeat Expansion Detection (RED) and the RED Cloning Strategy

The sex-stratified genetic architecture of ankylosing spondylitis

Mathioudaki, Argyri; Nordin, Jessika; Karlsson, Åsa; Murén, Eva et al.

Replication and fine mapping of ankylosing spondylitis replicated loci in the Swedish population reveal different CCHCR1 protective haplotypes

Mathioudaki, Argyri; Nordin, Jessika; Murén, Eva; Karlsson, Åsa et al.

Genome-wide meta-analysis identifies inherited variation contributing to overall risk and age of onset in canine angiosarcoma

Megquier, Katherine; Tonomura, Noriko; Fall, Tove; Noh, Hyun Ji et al.

Exome sequencing of hemangiosarcomas in the golden retriever reveals frequent mutation of TP53 tumor suppressor and PIK3CA oncogene

Megquier, Katherine; Turner-Maier, Jason; Swofford, Ross; Kim, Jong Hyuk et al.