Amin Allalou
Researcher at Department of Information Technology; Vi3; Image Analysis
- Mobile phone:
- +46 73 566 22 63
- E-mail:
- amin.allalou@it.uu.se
- Visiting address:
- Hus 10, Lägerhyddsvägen 1
- Postal address:
- Box 337
751 05 UPPSALA
More information is available to staff who log in.
Publications
Selection of publications
- TAF1, associated with intellectual disability in humans, is essential for embryogenesis and regulates neurodevelopmental processes in zebrafish (2019)
- Automated deep-phenotyping of the vertebrate brain (2017)
- Decoding gene expression in 2D and 3D (2017)
- Passive in-vehicle driver breath alcohol detection using advanced sensor signal acquisition and fusion (2017)
- High-throughput hyperdimensional vertebrate phenotyping (2013)
- Fully automated cellular-resolution vertebrate screening platform with parallel animal processing (2012)
- Methods for 2D and 3D Quantitative Microscopy of Biological Samples (2011)
- Increasing the dynamic range of in situ PLA (2011)
- High-throughput cellular-resolution in vivo vertebrate screening (2011)
- BlobFinder, a tool for fluorescence microscopy image cytometry (2009)
- Signal Detection in 3D by Stable Wave Signal Verification (2009)
- A detailed analysis of 3D subcellular signal localization (2009)
- Image based measurements of single cell mtDNA mutation load MTD 2007 (2007)
- Image Based Measurements of Single Cell mtDNA Mutation Load (2007)
- Segmentation of Cytoplasms of Cultured Cells (2007)
Recent publications
- Aurora kinase B is required for growth and expansion of medulloblastoma cells in the tissue context (2025)
- Multiple cis-regulatory elements control prox1a expression in distinct lymphatic vascular beds (2024)
- mafba and mafbb differentially regulate lymphatic endothelial cell migration in topographically distinct manners (2022)
- Chondroitin/dermatan sulfate glycosyltransferase genes are essential for craniofacial development (2022)
- A novel cis-regulatory element drives early expression of Nkx3.2 in the gnathostome primary jaw joint (2022)
All publications
Articles
- Aurora kinase B is required for growth and expansion of medulloblastoma cells in the tissue context (2025)
- Multiple cis-regulatory elements control prox1a expression in distinct lymphatic vascular beds (2024)
- mafba and mafbb differentially regulate lymphatic endothelial cell migration in topographically distinct manners (2022)
- Chondroitin/dermatan sulfate glycosyltransferase genes are essential for craniofacial development (2022)
- A novel cis-regulatory element drives early expression of Nkx3.2 in the gnathostome primary jaw joint (2022)
- The Role of Gdf5 in the Development of the Zebrafish Fin Endoskeleton (2022)
- The broad role of Nkx3.2 in the development of the zebrafish axial skeleton (2021)
- Behavioral Characterization of dmrt3a Mutant Zebrafish Reveals Crucial Aspects of Vertebrate Locomotion through Phenotypes Related to Acceleration (2020)
- Translating GWAS-identified loci for cardiac rhythm and rate using an in vivo image- and CRISPR/Cas9-based approach (2020)
- zOPT: an open source optical projection tomography system and methods for rapid 3D zebrafish imaging (2020)
- TAF1, associated with intellectual disability in humans, is essential for embryogenesis and regulates neurodevelopmental processes in zebrafish (2019)
- Brain activity patterns in high-throughput electrophysiology screen predict both drug efficacies and side effects. (2018)
- Automated deep-phenotyping of the vertebrate brain (2017)
- Passive in-vehicle driver breath alcohol detection using advanced sensor signal acquisition and fusion (2017)
- High-throughput hyperdimensional vertebrate phenotyping (2013)
- Fully automated cellular-resolution vertebrate screening platform with parallel animal processing (2012)
- Increasing the dynamic range of in situ PLA (2011)
- Robust signal detection in 3D fluorescence microscopy (2010)
- BlobFinder, a tool for fluorescence microscopy image cytometry (2009)
- A detailed analysis of 3D subcellular signal localization (2009)
- Single-cell A3243G mitochondrial DNA mutation load assays for segregation analysis (2007)
- Kita crispants for systematic image-based genetic screens of complex traits in zebrafish larvae
- Characterizing obesity-susceptibility genes using CRISPR/Cas9, in vivo imaging and deep learning
- Characterizing candidate genes in GWAS-identified loci that may uncouple excess adiposity from its comorbidities
- Distinct cis-regulatory elements drive prox1a expression in specific lymphatic vascular beds
- An evolutionarily conserved cis-regulatory element of nkx3.2 drives jaw joint-specific expression in zebrafish
- The Broad Role of Nkx3.2 in the Development of the Zebrafish Axial Skeleton
Books
Conferences
- Decoding gene expression in 2D and 3D (2017)
- Making isotropic 3D imaging at microscopic scale accessible to every lab (2012)
- Isotropic 3D imaging of biological specimens at micro and nano scale (2012)
- Approaches for increasing throughput andinformation content of image-based zebrafishscreens (2011)
- High-throughput cellular-resolution in vivo vertebrate screening (2011)
- Cuanto: A Tool for Quantification of Bone Tissue in the Proximityof Implants (2011)
- Signal Detection in 3D by Stable Wave Signal Verification (2009)
- Image based measurements of single cell mtDNA mutation load MTD 2007 (2007)
- Image Based Measurements of Single Cell mtDNA Mutation Load (2007)
- Segmentation of Cytoplasms of Cultured Cells (2007)