Patrik Ellström

Validation of an Optimised Method for Quantitative Detection of Hepatitis E Virus in Pork Sausage

Persson, Sofia; Molin, Ramia; Eriksson, Ronnie; Lavander, Moa et al.

Part of Food and Environmnetal Virology, 2025

• DOI for Validation of an Optimised Method for Quantitative Detection of Hepatitis E Virus in Pork Sausage
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Seroprevalence of tick-borne encephalitis virus and vaccination coverage of tick-borne encephalitis, Sweden, 2018 to 2019

Albinsson, Bo; Hoffman, Tove; Kolstad, Linda; Bergström, Tomas et al.

Part of Eurosurveillance, 2024

• DOI for Seroprevalence of tick-borne encephalitis virus and vaccination coverage of tick-borne encephalitis, Sweden, 2018 to 2019
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Proximity to humans is associated with antimicrobial-resistant enteric pathogens in wild bird microbiomes

Mourkas, Evangelos; Valdebenito, José O.; Marsh, Hannah; Hitchings, Matthew D. et al.

Part of Current Biology, p. 3955-39650000, 2024

• DOI for Proximity to humans is associated with antimicrobial-resistant enteric pathogens in wild bird microbiomes

No colonization resistance to Campylobacter jejuni in broilers fed brown algal extract-supplemented diets

Eliasson, Eliska; Sun, Li; Cervin, Gunnar; Pavia, Henrik et al.

Part of Frontiers in Microbiology, 2024

• DOI for No colonization resistance to Campylobacter jejuni in broilers fed brown algal extract-supplemented diets
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Assessing compatibility and viral fitness between poultry-adapted H9N2 and wild bird-derived neuraminidases

Wasberg, Anishia; Rodrigues Faria, Ines; Bergholm, Julia; Petric, Philipp P. et al.

Part of Scientific Reports, 2023

• DOI for Assessing compatibility and viral fitness between poultry-adapted H9N2 and wild bird-derived neuraminidases
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Validation of an Optimised Method for Quantitative Detection of Hepatitis E Virus in Pork Sausage

Persson, Sofia; Molin, Ramia; Eriksson, Ronnie; Lavander, Moa et al.

Part of Food and Environmnetal Virology, 2025

• DOI for Validation of an Optimised Method for Quantitative Detection of Hepatitis E Virus in Pork Sausage
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Seroprevalence of tick-borne encephalitis virus and vaccination coverage of tick-borne encephalitis, Sweden, 2018 to 2019

Albinsson, Bo; Hoffman, Tove; Kolstad, Linda; Bergström, Tomas et al.

Part of Eurosurveillance, 2024

• DOI for Seroprevalence of tick-borne encephalitis virus and vaccination coverage of tick-borne encephalitis, Sweden, 2018 to 2019
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Proximity to humans is associated with antimicrobial-resistant enteric pathogens in wild bird microbiomes

Mourkas, Evangelos; Valdebenito, José O.; Marsh, Hannah; Hitchings, Matthew D. et al.

Part of Current Biology, p. 3955-39650000, 2024

• DOI for Proximity to humans is associated with antimicrobial-resistant enteric pathogens in wild bird microbiomes

No colonization resistance to Campylobacter jejuni in broilers fed brown algal extract-supplemented diets

Eliasson, Eliska; Sun, Li; Cervin, Gunnar; Pavia, Henrik et al.

Part of Frontiers in Microbiology, 2024

• DOI for No colonization resistance to Campylobacter jejuni in broilers fed brown algal extract-supplemented diets
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Assessing compatibility and viral fitness between poultry-adapted H9N2 and wild bird-derived neuraminidases

Wasberg, Anishia; Rodrigues Faria, Ines; Bergholm, Julia; Petric, Philipp P. et al.

Part of Scientific Reports, 2023

• DOI for Assessing compatibility and viral fitness between poultry-adapted H9N2 and wild bird-derived neuraminidases
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Expression of influenza A virus glycan receptor candidates in mallard, chicken, and tufted duck

Nilsson, Jonas; Eriksson, Per; Naguib, Mahmoud M.; Jax, Elinor et al.

Part of Glycobiology, 2023

• DOI for Expression of influenza A virus glycan receptor candidates in mallard, chicken, and tufted duck
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Intestinal colonization with Campylobacter jejuni affects broiler gut microbiota composition but is not inhibited by daily intake of Lactiplantibacillus plantarum

Valeckova, Eliska; Sun, Li; Wang, Helen; Dube, Faruk et al.

Part of Frontiers in Microbiology, 2023

• DOI for Intestinal colonization with Campylobacter jejuni affects broiler gut microbiota composition but is not inhibited by daily intake of Lactiplantibacillus plantarum
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A Comparison of Host Responses to Infection with Wild-Type Avian Influenza Viruses in Chickens and Tufted Ducks

Naguib, Mahmoud; Eriksson, Per; Jax, Elinor; Wille, Michelle et al.

Part of Microbiology Spectrum, 2023

• DOI for A Comparison of Host Responses to Infection with Wild-Type Avian Influenza Viruses in Chickens and Tufted Ducks
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Prevalence of SARS-CoV-2 Omicron Sublineages and Spike Protein Mutations Conferring Resistance against Monoclonal Antibodies in a Swedish Cohort during 2022–2023

Haars, Jonathan; Palanisamy, Navaneethan; Wallin, Frans; Mölling, Paula et al.

Part of Microorganisms, 2023

• DOI for Prevalence of SARS-CoV-2 Omicron Sublineages and Spike Protein Mutations Conferring Resistance against Monoclonal Antibodies in a Swedish Cohort during 2022–2023
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An oseltamivir-resistant avian H1N1 influenza A virus can transmit from mallards to chickens similarly to a wild-type strain: implications for the risk of resistance transmission to humans

Skog, Erik; Nykvist, Marie; Naguib, Mahmoud M.; Wille, Michelle et al.

Part of Journal of General Virology, 2023

• DOI for An oseltamivir-resistant avian H1N1 influenza A virus can transmit from mallards to chickens similarly to a wild-type strain: implications for the risk of resistance transmission to humans
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rprimer: an R/bioconductor package for design of degenerate oligos for sequence variable viruses

Persson, Sofia; Larsson, Christina; Simonsson, Magnus; Ellström, Patrik

Part of BMC Bioinformatics, 2022

• DOI for rprimer: an R/bioconductor package for design of degenerate oligos for sequence variable viruses
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In-Flight Transmission of a SARS-CoV-2 Lineage B.1.617.2 Harbouring the Rare S:E484Q Immune Escape Mutation

Martinell, Mats; Andersson, Tanja; Mannsverk, Steinar Smorholm; Bergholm, Julia et al.

Part of Viruses, 2022

• DOI for In-Flight Transmission of a SARS-CoV-2 Lineage B.1.617.2 Harbouring the Rare S:E484Q Immune Escape Mutation
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Genetic Variations among Different Variants of G1-like Avian Influenza H9N2 Viruses and Their Pathogenicity in Chickens

Adel, Amany; Abdelmagid, Marwa A.; Mohamed, Ahmed Abd-Elhalem; Wasberg, Anishia et al.

Part of Viruses, 2022

• DOI for Genetic Variations among Different Variants of G1-like Avian Influenza H9N2 Viruses and Their Pathogenicity in Chickens
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Host ecology regulates interspecies recombination in bacteria of the genus Campylobacter

Mourkas, Evangelos; Yahara, Koji; Bayliss, Sion C.; Calland, Jessica K. et al.

Part of eLIFE, 2022

• DOI for Host ecology regulates interspecies recombination in bacteria of the genus Campylobacter
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SARS-CoV-2 variants of concern and spike protein mutational dynamics in a Swedish cohort during 2021, studied by Nanopore sequencing

Mannsverk, Steinar; Bergholm, Julia; Palanisamy, Navaneethan; Ellström, Patrik et al.

Part of Virology Journal, 2022

• DOI for SARS-CoV-2 variants of concern and spike protein mutational dynamics in a Swedish cohort during 2021, studied by Nanopore sequencing
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A new assay for quantitative detection of hepatitis A virus

Persson, Sofia; Alm, Erik; Karlsson, Mans; Enkirch, Theresa et al.

Part of Journal of Virological Methods, 2021

• DOI for A new assay for quantitative detection of hepatitis A virus
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A high-quality genome and comparison of short-versus long-read transcriptome of the palaearctic duck Aythya fuligula (tufted duck)

Mueller, Ralf C.; Ellström, Patrik; Howe, Kerstin; Uliano-Silva, Marcela et al.

Part of GigaScience, 2021

• DOI for A high-quality genome and comparison of short-versus long-read transcriptome of the palaearctic duck Aythya fuligula (tufted duck)
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Differences in Genotype and Antimicrobial Resistance between Campylobacter spp. Isolated from Organic and Conventionally Produced Chickens in Sweden

Hansson, Ingrid; Ellström, Patrik; Nilsson, Oskar; Chaba, Matilda et al.

Part of Pathogens, 2021

• DOI for Differences in Genotype and Antimicrobial Resistance between Campylobacter spp. Isolated from Organic and Conventionally Produced Chickens in Sweden
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Host Range of Influenza A Virus H1 to H16 in Eurasian Ducks Based on Tissue and Receptor Binding Studies

Verhagen, Josanne H.; Eriksson, Per; Leijten, Lonneke; Blixt, Ola et al.

Part of Journal of Virology, 2021

• DOI for Host Range of Influenza A Virus H1 to H16 in Eurasian Ducks Based on Tissue and Receptor Binding Studies
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Silage and haylage as forage in slow and fast-growing broilers - effects on performance in Campylobacter jejuni infected birds

Valečková, Eliška; Ivarsson, Emma; Ellström, Patrik; Wang, Helen et al.

Part of British Poultry Science, p. 433-441, 2020

• DOI for Silage and haylage as forage in slow and fast-growing broilers - effects on performance in Campylobacter jejuni infected birds
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Towards pandemic preparedness beyond COVID-19

Naguib, Mahmoud; Ellström, Patrik; Järhult, Josef D.; Lundkvist, Åke et al.

Part of LANCET MICROBE, 2020

• DOI for Towards pandemic preparedness beyond COVID-19
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Chlamydia psittaci in Fulmars on The Faroe Islands: A Causative Link to South American Psittacines Eight Decades After a Severe Epidemic

Wang, Helen; Jensen, Jens-Kjeld; Olsson, Anna; Vorimore, Fabien et al.

Part of Microbes and infection, p. 356-359, 2020

• DOI for Chlamydia psittaci in Fulmars on The Faroe Islands: A Causative Link to South American Psittacines Eight Decades After a Severe Epidemic
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Circumpolar diversification of the Ixodes uriae tick virome

Pettersson, John H.-O.; Ellström, Patrik; Ling, Jiaxin; Nilsson, Ingela et al.

Part of PLoS Pathogens, 2020

• DOI for Circumpolar diversification of the Ixodes uriae tick virome
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Missing the Match Might Not Cost You the Game: Primer-Template Mismatches Studied in Different Hepatitis A Virus Variants

Persson, Sofia; Karlsson, Mans; Borsch-Reniers, Henrik; Ellström, Patrik et al.

Part of Food and Environmnetal Virology, p. 297-308, 2019

• DOI for Missing the Match Might Not Cost You the Game: Primer-Template Mismatches Studied in Different Hepatitis A Virus Variants
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Attachment Patterns of Human and Avian Influenza Viruses to Trachea and Colon of 26 Bird Species: Support for the Community Concept

Eriksson, Per; Lindskog, Cecilia; Lorente-Leal, Victor; Waldenström, Jonas et al.

Part of Frontiers in Microbiology, 2019

• DOI for Attachment Patterns of Human and Avian Influenza Viruses to Trachea and Colon of 26 Bird Species: Support for the Community Concept
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The Potential of Isolation Source to Predict Colonization in Avian Hosts: A Case Study in Campylobacter jejuni Strains From Three Bird Species

Atterby, Clara; Mourkas, Evangelos; Meric, Guillaume; Pascoe, Ben et al.

Part of Frontiers in Microbiology, 2018

• DOI for The Potential of Isolation Source to Predict Colonization in Avian Hosts: A Case Study in Campylobacter jejuni Strains From Three Bird Species

Comparison between RT droplet digital PCR and RT real-time PCR for quantification of noroviruses in oysters.

Persson, Sofia; Eriksson, Ronnie; Lowther, James; Ellström, Patrik et al.

Part of International Journal of Food Microbiology, p. 73-83, 2018

• DOI for Comparison between RT droplet digital PCR and RT real-time PCR for quantification of noroviruses in oysters.

Characterization of Campylobacter spp. isolated from wild birds in the Antarctic and Sub-Antarctic

Johansson, Håkan; Ellström, Patrik; Artursson, Karin; Berg, Charlotte et al.

Part of PLOS ONE, 2018

• DOI for Characterization of Campylobacter spp. isolated from wild birds in the Antarctic and Sub-Antarctic
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Evaluation and optimization of microbial DNA extraction from fecal samples of wild Antarctic bird species

Eriksson, Per; Mourkas, Evangelos; González-Acuna, Daniel; Olsen, Björn et al.

Part of Infection Ecology & Epidemiology, 2017

• DOI for Evaluation and optimization of microbial DNA extraction from fecal samples of wild Antarctic bird species
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Lipooligosaccharide locus classes and putative virulence genes among chicken and human Campylobacter jejuni isolates

Ellström, Patrik; Hansson, Ingrid; Nilsson, Anna; Rautelin, Hilpi et al.

Part of BMC Microbiology, 2016

• DOI for Lipooligosaccharide locus classes and putative virulence genes among chicken and human Campylobacter jejuni isolates
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Evidence for the Introduction, Reassortment, and Persistence of Diverse Influenza A Viruses in Antarctica

Hurt, Aeron C.; Su, Yvonne C. F.; Aban, Malet; Peck, Heidi et al.

Part of Journal of Virology, p. 9674-9682, 2016

• DOI for Evidence for the Introduction, Reassortment, and Persistence of Diverse Influenza A Viruses in Antarctica
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Detection of Campylobacter in human and animal field samples in Cambodia

Osbjer, Kristina; Tano, Eva; Chhayheng, Leang; Mac-Kwashie, Akofa Olivia et al.

Part of Acta Pathologica, Microbiologica et Immunologica Scandinavica (APMIS), p. 508-515, 2016

• DOI for Detection of Campylobacter in human and animal field samples in Cambodia
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Comparative genomics and genome biology of invasive Campylobacter jejuni

Skarp, Astrid; Akinrinade, O.; Nilsson, Anna J. E.; Ellström, Patrik et al.

Part of Scientific Reports, 2015

• DOI for Comparative genomics and genome biology of invasive Campylobacter jejuni
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Lipooligosaccharide locus class of Campylobacter jejuni: sialylation is not needed for invasive infection

Ellström, Patrik; Feodoroff, B.; Hanninen, M. -L; Rautelin, Hilpi

Part of Clinical Microbiology and Infection, p. 524-529, 2014

• DOI for Lipooligosaccharide locus class of Campylobacter jejuni: sialylation is not needed for invasive infection

Susceptibility to Campylobacter Infection Is Associated with the Species Composition of the Human Fecal Microbiota

Dicksved, Johan; Ellström, Patrik; Engstrand, Lars; Rautelin, Hilpi

Part of mBio, 2014

• DOI for Susceptibility to Campylobacter Infection Is Associated with the Species Composition of the Human Fecal Microbiota
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A Prospective Follow-Up Study on Transmission of Campylobacter from Poultry to Abattoir Workers

Ellström, Patrik; Hansson, Ingrid; Soderstrom, Claes; Engvall, Eva Olsson et al.

Part of Foodborne Pathogens and Disease, p. 684-688, 2014

• DOI for A Prospective Follow-Up Study on Transmission of Campylobacter from Poultry to Abattoir Workers

European H16N3 Gull Influenza Virus Attaches to the Human Respiratory Tract and Eye

Lindskog, Cecilia; Ellström, Patrik; Olsen, Björn; Pontén, Fredrik et al.

Part of PLOS ONE, 2013

• DOI for European H16N3 Gull Influenza Virus Attaches to the Human Respiratory Tract and Eye
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Campylobacter jejuni Actively Invades the Amoeba Acanthamoeba polyphaga and Survives within Non Digestive Vacuoles

Olofsson, Jenny; Axelsson-Olsson, Diana; Brudin, Lars; Olsen, Björn et al.

Part of PLOS ONE, 2013

• DOI for Campylobacter jejuni Actively Invades the Amoeba Acanthamoeba polyphaga and Survives within Non Digestive Vacuoles
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Characterization of clinical Campylobacter jejuni isolates with special emphasis on lipooligosaccharide locus class, putative virulence factors and host response

Ellström, Patrik; Feodoroff, Benjamin; Hanninen, Marja-Liisa; Rautelin, Hilpi

Part of International Journal of Medical Microbiology, p. 134-139, 2013

• DOI for Characterization of clinical Campylobacter jejuni isolates with special emphasis on lipooligosaccharide locus class, putative virulence factors and host response

Clonal Distribution and Virulence of Campylobacter jejuni Isolates in Blood

Feodoroff, Benjamin; de Haan, Caroline P. A.; Ellstrom, Patrik; Sarna, Seppo et al.

Part of Emerging Infectious Diseases, p. 1653-1655, 2013

• DOI for Clonal Distribution and Virulence of Campylobacter jejuni Isolates in Blood

The Pattern of Influenza Virus Attachment Varies among Wild Bird Species

Jourdain, Elsa; van Riel, Debby; Munster, Vincent J.; Kuiken, Thijs et al.

Part of PLOS ONE, 2011

• DOI for The Pattern of Influenza Virus Attachment Varies among Wild Bird Species

Finnish Campylobacter jejuni Strains of Multilocus Sequence Type ST-22 Complex Have Two Lineages with Different Characteristics

Revez, Joana; Rossi, Mirko; Ellström, Patrik; de Haan, Caroline et al.

Part of PLOS ONE, 2011

• DOI for Finnish Campylobacter jejuni Strains of Multilocus Sequence Type ST-22 Complex Have Two Lineages with Different Characteristics
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A Nationwide Study of Campylobacter jejuni and Campylobacter coli Bacteremia in Finland over a 10-Year Period, 1998-2007, with Special Reference to Clinical Characteristics and Antimicrobial Susceptibility

Feodoroff, Benjamin; Lauhio, Anneli; Ellström, Patrik; Rautelin, Hilpi

Part of Clinical Infectious Diseases, 2011

• DOI for A Nationwide Study of Campylobacter jejuni and Campylobacter coli Bacteremia in Finland over a 10-Year Period, 1998-2007, with Special Reference to Clinical Characteristics and Antimicrobial Susceptibility

Predicting risk habitats for the transmission of the small liver fluke, Dicrocoelium dendriticum to grazing ruminants

Ekstam, Börje; Johansson, Beatha; Dinnétz, Patrik; Ellström, Patrik

Part of Geospatial health: Health applications in Geospatial Science, p. 125-131, 2011

Campylobacter jejuni isolates in Finnish patients differ according to the origin of infection

Feodoroff, Benjamin; Ellström, Patrik; Hyytiainen, Heidi; Sarna, Seppo et al.

Part of Gut Pathogens, 2010

• DOI for Campylobacter jejuni isolates in Finnish patients differ according to the origin of infection
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Amoebae and algae can prolong the survival of Campylobacter species in co-culture

Axelsson-Olsson, Diana; Olofsson, Jenny; Svensson, Lovisa; Griekspoor, Petra et al.

Part of Experimental parasitology, p. 59-64, 2010

• DOI for Amoebae and algae can prolong the survival of Campylobacter species in co-culture

Campylobacter jejuni colonization in wild birds: results from an infection experiment

Waldenström, Jonas; Axelsson-Olsson, Diana; Olsen, Björn; Hasselquist, Dennis et al.

Part of 10.1371/journal.pone.0009082, 2010

• DOI for Campylobacter jejuni colonization in wild birds: results from an infection experiment

Increase in acid tolerance of Campylobacter jejuni through coincubation with amoebae

Axelsson-Olsson, Diana; Svensson, Lovisa; Olofsson, Jenny; Salomon, Paulo et al.

Part of Applied and Environmental Microbiology, p. 4194-4200, 2010

• DOI for Increase in acid tolerance of Campylobacter jejuni through coincubation with amoebae

The ‘‘human influenza receptor’’ Neu5Aca2,6 Gal is expressed among different taxa of wild birds

Ellström, Patrik; Jourdain, Elsa; Gunnarsson, Oskar; Waldenström, Jonas et al.

Part of Archives of Virology, p. 1533-1537, 2009

• DOI for The ‘‘human influenza receptor’’ Neu5Aca2,6 Gal is expressed among different taxa of wild birds

Avian influenza viruses at the wild-domestic bird interface in Egypt

Naguib, Mahmoud M.; Verhagen, Josanne H.; Samy, Ahmed; Eriksson, Per et al.

Part of Infection Ecology & Epidemiology, 2019

• DOI for Avian influenza viruses at the wild-domestic bird interface in Egypt
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Global patterns of avian influenza A (H7): virus evolution and zoonotic threats

Naguib, Mahmoud; Verhagen, Josanne H.; Mostafa, Ahmed; Wille, Michelle et al.

Part of FEMS Microbiology Reviews, p. 608-621, 2019

• DOI for Global patterns of avian influenza A (H7): virus evolution and zoonotic threats
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