Siv Andersson
Professor at Department of Cell and Molecular Biology; Molecular Evolution
- Telephone:
- +46 18 471 43 79
- E-mail:
- siv.andersson@icm.uu.se
- Visiting address:
- Husargatan 3
752 37 UPPSALA - Postal address:
- Box 596
751 24 UPPSALA
Publications
Recent publications
Origin and Evolution of Key Enzymes in the Anammox Pathway Revisited
Part of Genome Biology and Evolution, 2025
Folded Alpha Helical Putative New Proteins from Apilactobacillus kunkeei
Part of Journal of Molecular Biology, 2024
- DOI for Folded Alpha Helical Putative New Proteins from Apilactobacillus kunkeei
- Download full text (pdf) of Folded Alpha Helical Putative New Proteins from Apilactobacillus kunkeei
Part of Genome Biology and Evolution, 2024
- DOI for Phylogeny and Expansion of Serine/Threonine Kinases in Phagocytotic Bacteria in the Phylum Planctomycetota
- Download full text (pdf) of Phylogeny and Expansion of Serine/Threonine Kinases in Phagocytotic Bacteria in the Phylum Planctomycetota
TADA: Taxonomy-Aware Dataset Aggregator
Part of Bioinformatics, 2023
- DOI for TADA: Taxonomy-Aware Dataset Aggregator
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Genome Evolution of a Symbiont Population for Pathogen Defense in Honeybees
Part of Genome Biology and Evolution, 2022
- DOI for Genome Evolution of a Symbiont Population for Pathogen Defense in Honeybees
- Download full text (pdf) of Genome Evolution of a Symbiont Population for Pathogen Defense in Honeybees
All publications
Articles in journal
Origin and Evolution of Key Enzymes in the Anammox Pathway Revisited
Part of Genome Biology and Evolution, 2025
Folded Alpha Helical Putative New Proteins from Apilactobacillus kunkeei
Part of Journal of Molecular Biology, 2024
- DOI for Folded Alpha Helical Putative New Proteins from Apilactobacillus kunkeei
- Download full text (pdf) of Folded Alpha Helical Putative New Proteins from Apilactobacillus kunkeei
Part of Genome Biology and Evolution, 2024
- DOI for Phylogeny and Expansion of Serine/Threonine Kinases in Phagocytotic Bacteria in the Phylum Planctomycetota
- Download full text (pdf) of Phylogeny and Expansion of Serine/Threonine Kinases in Phagocytotic Bacteria in the Phylum Planctomycetota
TADA: Taxonomy-Aware Dataset Aggregator
Part of Bioinformatics, 2023
- DOI for TADA: Taxonomy-Aware Dataset Aggregator
- Download full text (pdf) of TADA: Taxonomy-Aware Dataset Aggregator
Genome Evolution of a Symbiont Population for Pathogen Defense in Honeybees
Part of Genome Biology and Evolution, 2022
- DOI for Genome Evolution of a Symbiont Population for Pathogen Defense in Honeybees
- Download full text (pdf) of Genome Evolution of a Symbiont Population for Pathogen Defense in Honeybees
Part of Frontiers in Microbiology, 2021
- DOI for The Subcellular Proteome of a Planctomycetes Bacterium Shows That Newly Evolved Proteins Have Distinct Fractionation Patterns
- Download full text (pdf) of The Subcellular Proteome of a Planctomycetes Bacterium Shows That Newly Evolved Proteins Have Distinct Fractionation Patterns
Antibiotics should not be used for back/leg pain
Part of Acta Orthopaedica, p. 244-246, 2021
- DOI for Antibiotics should not be used for back/leg pain
- Download full text (pdf) of Antibiotics should not be used for back/leg pain
Part of The spine journal, p. 1233-1235, 2021
Evolutionary Remodeling of the Cell Envelope in Bacteria of the Planctomycetes Phylum
Part of Genome Biology and Evolution, p. 1528-1548, 2020
- DOI for Evolutionary Remodeling of the Cell Envelope in Bacteria of the Planctomycetes Phylum
- Download full text (pdf) of Evolutionary Remodeling of the Cell Envelope in Bacteria of the Planctomycetes Phylum
Paralogization and New Protein Architectures in Planctomycetes Bacteria with Complex Cell Structures
Part of Molecular biology and evolution, p. 1020-1040, 2020
Rethinking microbial symbioses
Part of FEMS Microbiology Letters, 2020
Bacteria: back pain, leg pain and Modic sign-a surgical multicentre comparative study
Part of European spine journal, p. 2981-2989, 2019
- DOI for Bacteria: back pain, leg pain and Modic sign-a surgical multicentre comparative study
- Download full text (pdf) of Bacteria: back pain, leg pain and Modic sign-a surgical multicentre comparative study
Genome Evolution of Bartonellaceae Symbionts of Ants at the Opposite Ends of the Trophic Scale
Part of Genome Biology and Evolution, p. 1687-1704, 2018
- DOI for Genome Evolution of Bartonellaceae Symbionts of Ants at the Opposite Ends of the Trophic Scale
- Download full text (pdf) of Genome Evolution of Bartonellaceae Symbionts of Ants at the Opposite Ends of the Trophic Scale
Origin and evolution of the Bartonella Gene Transfer Agent
Part of Molecular biology and evolution, p. 451-464, 2018
- DOI for Origin and evolution of the Bartonella Gene Transfer Agent
- Download full text (pdf) of Origin and evolution of the Bartonella Gene Transfer Agent
Specificity in Arabidopsis thaliana recruitment of root fungal communities from soil and rhizosphere
Part of Fungal Biology, p. 231-240, 2018
Contrasting patterns of genome-level diversity across distinct co-occurring bacterial populations
Part of The ISME Journal, p. 742-755, 2018
- DOI for Contrasting patterns of genome-level diversity across distinct co-occurring bacterial populations
- Download full text (pdf) of Contrasting patterns of genome-level diversity across distinct co-occurring bacterial populations
Why mitochondria need a genome revisited
Part of FEBS Letters, p. 65-75, 2017
Part of Genome Biology and Evolution, p. 2560-2579, 2017
- DOI for Switches in Genomic GC Content Drive Shifts of Optimal Codons under Sustained Selection on Synonymous Sites
- Download full text (pdf) of Switches in Genomic GC Content Drive Shifts of Optimal Codons under Sustained Selection on Synonymous Sites
Part of International Journal of Systematic and Evolutionary Microbiology, p. 4923-4929, 2017
- DOI for Tuwongella immobilis gen. nov., sp nov., a novel non-motile bacterium within the phylum Planctomycetes
- Download full text (pdf) of Tuwongella immobilis gen. nov., sp nov., a novel non-motile bacterium within the phylum Planctomycetes
Stress management strategies in single bacterial cells
Part of Proceedings of the National Academy of Sciences of the United States of America, p. 3921-3923, 2016
Part of Scientific Reports, p. 1-11, 2016
- DOI for The genome of Rhizobiales bacteria in predatory ants reveals urease gene functions but no genes for nitrogen fixation
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Tuning fresh: radiation through rewiring of central metabolism in streamlined bacteria
Part of The ISME Journal, p. 1902-1914, 2016
Extensive intra-phylotype diversity in lactobacilli and bifidobacteria from the honeybee gut
Part of BMC Genomics, 2015
- DOI for Extensive intra-phylotype diversity in lactobacilli and bifidobacteria from the honeybee gut
- Download full text (pdf) of Extensive intra-phylotype diversity in lactobacilli and bifidobacteria from the honeybee gut
Part of Genome Biology and Evolution, p. 1455-1473, 2015
- DOI for Functionally Structured Genomes in Lactobacillus kunkeei Colonizing the Honey Crop and Food Products of Honeybees and Stingless Bees
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Mitochondrial genomes are retained by selective constraints on protein targeting
Part of Proceedings of the National Academy of Sciences of the United States of America, p. 10154-10161, 2015
Part of The ISME Journal, p. 2373-2385, 2015
Single cell genomics of deep ocean bacteria
Part of Trends in Microbiology, p. 233-234, 2014
Part of Genome Biology and Evolution, p. 2240-2257, 2014
- DOI for Missing Genes, Multiple ORFs, and C-to-U Type RNA Editing in Acrasis kona (Heterolobosea, Excavata) Mitochondrial DNA
- Download full text (pdf) of Missing Genes, Multiple ORFs, and C-to-U Type RNA Editing in Acrasis kona (Heterolobosea, Excavata) Mitochondrial DNA
Extensive duplication of the Wolbachia DNA in chromosome four of Drosophila ananassae
Part of BMC Genomics, p. 1097, 2014
- DOI for Extensive duplication of the Wolbachia DNA in chromosome four of Drosophila ananassae
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Part of Environmental Microbiology, p. 2682-2698, 2014
- DOI for Productivity and salinity structuring of the microplankton revealed by comparative freshwater metagenomics
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Comparative Genomics of Wolbachia and the Bacterial Species Concept
Part of PLOS Genetics, 2013
- DOI for Comparative Genomics of Wolbachia and the Bacterial Species Concept
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Part of PLOS ONE, 2013
- DOI for Testing the Reproducibility of Multiple Displacement Amplification on Genomes of Clonal Endosymbiont Populations
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Part of PLOS ONE, 2013
- DOI for Comparative and Phylogenomic Evidence that the Alphaproteobacterium HIMB59 is not a Member of the Oceanic SAR11 Clade
- Download full text (pdf) of Comparative and Phylogenomic Evidence that the Alphaproteobacterium HIMB59 is not a Member of the Oceanic SAR11 Clade
Part of PLOS ONE, 2013
- DOI for Adaptive Mutations and Replacements of Virulence Traits in the Escherichia coli O104:H4 Outbreak Population
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The Diversity and Evolution of Wolbachia Ankyrin Repeat Domain Genes
Part of PLOS ONE, 2013
- DOI for The Diversity and Evolution of Wolbachia Ankyrin Repeat Domain Genes
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No Ancient DNA Damage in Actinobacteria from the Neanderthal Bone
Part of PLOS ONE, 2013
- DOI for No Ancient DNA Damage in Actinobacteria from the Neanderthal Bone
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Single cell genomics reveals low recombination frequencies in freshwater bacteria of the SAR11 clade
Part of Genome Biology, 2013
- DOI for Single cell genomics reveals low recombination frequencies in freshwater bacteria of the SAR11 clade
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Part of PLOS Genetics, 2013
- DOI for A Gene Transfer Agent and a Dynamic Repertoire of Secretion Systems Hold the Keys to the Explosive Radiation of the Emerging Pathogen Bartonella
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A genome-wide study of recombination rate variation in Bartonella henselae
Part of BMC Evolutionary Biology, p. 65, 2012
- DOI for A genome-wide study of recombination rate variation in Bartonella henselae
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Part of PLOS Genetics, 2012
- DOI for Large-Scale Introgression Shapes the Evolution of the Mating-Type Chromosomes of the Filamentous Ascomycete Neurospora tetrasperma
- Download full text (pdf) of Large-Scale Introgression Shapes the Evolution of the Mating-Type Chromosomes of the Filamentous Ascomycete Neurospora tetrasperma
Bacterial genomes: Next generation sequencing technologies for studies of bacterial ecosystems
Part of Current Opinion in Microbiology, p. 603-604, 2012
Genomic diversity of the 2011 European outbreaks of Escherichia coli O104:H4
Part of Proceedings of the National Academy of Sciences of the United States of America, 2012
Independent Genome Reduction and Phylogenetic Reclassification of the Oceanic SAR11 Clade
Part of Molecular biology and evolution, p. 599-615, 2011
Part of PLOS ONE, 2011
genoPlotR: comparative gene and genome visualization in R
Part of Bioinformatics, p. 2334-2335, 2010
- DOI for genoPlotR: comparative gene and genome visualization in R
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Genome dynamics of Bartonella grahamii in micro-populations of woodland rodents
Part of BMC Genomics, p. 152, 2010
Part of Molecular Ecology, p. 2241-2255, 2010
Part of Journal of Bacteriology, p. 3352-3367, 2010
Part of PLoS genetics, 2009
The alpha-proteobacteria: the Darwin finches of the bacterial world
Part of Biology Letters, p. 429-432, 2009
Computational Resources in Infectious Disease: Limitations and Challenges
Part of PloS Computational Biology, 2009
The mosaic genome structure of the Wolbachia wRi strain infecting Drosophila simulans
Part of Proceedings of the National Academy of Sciences of the United States of America, p. 5725-5730, 2009
Endosymbiont gene functions impaired and rescued by polymerase infidelity at poly(A) tracts
Part of Proceedings of the National Academy of Sciences of the United States of America, p. 14934-14939, 2008
Part of Science, p. 342, 2008
Part of Genome Biology, 2008
Diversifying Selection and Concerted Evolution of a Type IV Secretion System in Bartonella
Part of Molecular biology and evolution, p. 287-300, 2008
The genomic and metabolic diversity of Rickettsia
Part of Research in Microbiology, p. 745-753, 2007
High-resolution genotyping of Chlamydia trachomatis strains by multilocus sequence analysis
Part of Journal of Clinical Microbiology, p. 1410-1414, 2007
Part of Proceedings of the National Academy of Sciences of the United States of America, p. 7981-7986, 2007
Origin and evolution of the mitochondrial aminoacyl-tRNA synthetases
Part of Molecular biology and evolution, p. 743-756, 2007
Part of Journal of Molecular Evolution, p. 600-614, 2006
Part of Journal of Bacteriology, p. 7426-7439, 2006
Part of Molecular biology and evolution, p. 1031-1039, 2006
The complete genome sequence of Francisella tularensis, the causative agent of tularemia
Part of Nature Genetics, p. 153-159, 2005
Part of Journal of Bacteriology, p. 6155-6165, 2005
Multispacer typing technique for sequence-based typing of Bartonella quintana
Part of Journal of Clinical Microbiology, p. 41-48, 2005
Functional divergence and horizontal transfer of type IV secretion systems
Part of Molecular biology and evolution, p. 1325-36, 2005
Genome reduction in the alpha-Proteobacteria
Part of Current Opinion in Microbiology, p. 579-585, 2005
Data rotation improves genomotyping efficiency
Part of Biometrical Journal, p. 585-598, 2005
Part of Proceedings of the National Academy of Sciences of the United States of America, p. 9716-9721, 2004
Bartonella adhesin A mediates a proangiogenic host cell response
Part of Journal of Experimental Medicine, p. 1267-1278, 2004
A phylogenomic study of endosymbiotic bacteria
Part of Molecular biology and evolution, p. 1110-1122, 2004
Part of Proteomics, p. 3021-3033, 2004
Computational inference of scenarios for alpha-proteobecterial genome evolution
Part of Proceedings of the National Academy of Sciences of the United States of America, p. 9722-9727, 2004
Evolution of minimal-gene-sets in host-dependent bacteria
Part of Trends in Microbiology, p. 37-43, 2004
Pseudogenes, junk DNA, and the dynamics of Rickettsia genomes
Part of Molecular biology and evolution, p. 829-839, 2001
A century of typhus, lice and Rickettsia
Part of Research in Microbiology, p. 143-150, 2000
Genome degradation is an ongoing process in Rickettsia
Part of Molecular biology and evolution, p. 1178-1191, 1999
Insights into the evolutionary process of genome degradation
Part of Current Opinion in Genetics and Development, p. 664-671, 1999
The genome sequence of Rickettsia prowazekii and the origin of mitochondria
Part of Nature, p. 133-140, 1998
Part of Microbiology, p. 2783-2795, 1997
Genome Evolution of a Symbiont Population for Pathogen Defence in Honeybees
Part of Genome Biology and Evolution
Articles, review/survey
Antibiotics should not be used for back/leg pain
Part of Acta Orthopaedica, p. 1-3, 2020
- DOI for Antibiotics should not be used for back/leg pain
- Download full text (pdf) of Antibiotics should not be used for back/leg pain
The challenges of integrating two genomes in one cell
Part of Current Opinion in Microbiology, p. 89-94, 2018
The ecological coherence of high bacterial taxonomic ranks
Part of Nature Reviews Microbiology, p. 523-529, 2010
Evolutionary microbial genomics: insights into bacterial host adaptation
Part of Nature reviews genetics, p. 465-475, 2010
Research on small genomes: Implications for synthetic biology
Part of Bioessays, p. 288-295, 2010
Intracellular pathogens go extreme: genome evolution in the Rickettsiales
Part of Trends in Genetics, p. 511-520, 2007
The bacterial world gets smaller
Part of Science, p. 259-260, 2006
The evolution of chronic infection strategies in the α-proteobacteria
Part of Nature Reviews Microbiology, p. 933-945, 2004
Conference papers
Deterioration of alpha-Proteobacterial human pathogen genomes
Part of Threat of Infection, p. 81-86, 2005