Publications

Spatial distribution and influence of the microclimate on the natural production of Amanita masasiensis in the Soudano-Guinean ecozone (West Africa)

Aboua, Hance Muriel N.; Badou, Sylvestre A.; Houdanon, Roel D.; Boukary, Abdoul-Azize et al.

Part of Forest Ecology and Management, 2025

Article in journal

• DOI for Spatial distribution and influence of the microclimate on the natural production of Amanita masasiensis in the Soudano-Guinean ecozone (West Africa)

Finding Starship Genetic Elements in Histoplasma Fungus

Pettersson, Gabriel André

2025

Student thesis

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Repeatome diversity in sea anemone genomics (Cnidaria: Actiniaria) based on the Actiniaria-REPlib library

Duran-Fuentes, Jeferson A.; Maronna, Maximiliano M.; Palacios Gimenez, Octavio Manuel; Castillo, Elio R. et al.

Part of BMC Genomics, 2025

Article in journal

• DOI for Repeatome diversity in sea anemone genomics (Cnidaria: Actiniaria) based on the Actiniaria-REPlib library
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Karyotype evolution and speciation in Orthoptera

Palacios Gimenez, Octavio Manuel; Castillo, Elio R. D.; Schielzeth, Holger

Part of Journal of Evolutionary Biology, p. 516-529, 2025

Article in journal

• DOI for Karyotype evolution and speciation in Orthoptera
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Boswellia hesperia sp. nov. (Burseraceae) from Socotra

Thulin, Mats; Weber, Michael; Mubarak, Sami Ali Mohammed; Rzepecky, Alain

Part of Nordic Journal of Botany, 2025

Article in journal

• DOI for Boswellia hesperia sp. nov. (Burseraceae) from Socotra
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Evolution of a bipolar sexual compatibility system in Marasmius

Thoren, Markus Hiltunen; Stanojkovic, Aleksandar; Ryberg, Martin; Johannesson, Hanna

Part of Mycologia, p. 19-33, 2025

Article in journal

• DOI for Evolution of a bipolar sexual compatibility system in Marasmius
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Diversity and Multigene Phylogeny of the Genus Floccularia (Agaricales, Basidiomycota)

Ge, Zai-Wei; Qu, Hua; Saba, Malka; Gao, Tian et al.

Part of Journal of Fungi, 2025

Article in journal

• DOI for Diversity and Multigene Phylogeny of the Genus Floccularia (Agaricales, Basidiomycota)
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The Origin and Diversification of Ectomycorrhizal Fungi

Khan, Faheema Kalsoom

2025

Doctoral thesis, comprehensive summary

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Five new species in Piloderma (Atheliales, Basidiomycota) and epitypification of P. byssinum

Svantesson, Sten; Tondeleir, Lowie; Kulju, Matti; Irsenaite, Reda et al.

Part of Fungal Biology, 2025

Article in journal

• DOI for Five new species in Piloderma (Atheliales, Basidiomycota) and epitypification of P. byssinum
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Evolution: Untangling the mix of plastid endosymbiosis events

Keeling, Patrick J.; Burki, Fabien

Part of Current Biology, 2025

Article in journal

• DOI for Evolution: Untangling the mix of plastid endosymbiosis events

Repetitive DNAs: the 'invisible' regulators of insect adaptation and speciation

Cabral-de-Mello, Diogo C.; Palacios-Gimenez, Octavio M.

Part of Current Opinion in Insect Science, 2025

Article in journal

• DOI for Repetitive DNAs: the 'invisible' regulators of insect adaptation and speciation

Swedish marine demosponge fauna (Porifera: Demospongiae) sampled 80 years after Jägerskiöld’s inventory

Pereira, Raquel; Larsson, Mats; Cárdenas, Paco; Thollesson, Mikael

Part of European journal of taxonomy, p. 1-64, 2025

Article in journal

• DOI for Swedish marine demosponge fauna (Porifera: Demospongiae) sampled 80 years after Jägerskiöld’s inventory
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The 2024 Outline of Fungi and fungus-like taxa

Hyde, K. D.; Ryberg, Martin; Svantesson, Sten; Zvyagina, E.

Part of Mycosphere, p. 5146-6239, 2024

Article in journal

• DOI for The 2024 Outline of Fungi and fungus-like taxa

20 years of bibliometric data illustrates a lack of concordance between journal impact factor and fungal species discovery in systematic mycology

Nilsson, R. Henrik; Jansson, Arnold Tobias; Wurzbacher, Christian; Anslan, Sten et al.

Part of MycoKeys, p. 273-285, 2024

Article in journal

• DOI for 20 years of bibliometric data illustrates a lack of concordance between journal impact factor and fungal species discovery in systematic mycology
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Novel Approach for Lifetime-Proportional Luminescence Imaging Using Frame Straddling

Ahmerkamp, Soeren; Pacherres, Cesar O.; Mosshammer, Maria; Godefroid, Mathilde et al.

Part of ACS Sensors, p. 5531-5540, 2024

Article in journal

• DOI for Novel Approach for Lifetime-Proportional Luminescence Imaging Using Frame Straddling
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Phylogenetic systematics of Vigna sensu stricto in the context of Physostigma and allies

Horton, Dasha M.; Feleke, Yonas; Pasquet, Remy S.; Javadi, Firouzeh et al.

Part of American Journal of Botany, 2024

Article in journal

• DOI for Phylogenetic systematics of Vigna sensu stricto in the context of Physostigma and allies

Inga Hedberg (1927-2024) –: inspirational driving force in tropical African botany for 60 years

Friis, Ib; Demissew, Sebsebe; Thulin, Mats

Part of Webbia, p. 3-18, 2024

Article in journal

• DOI for Inga Hedberg (1927-2024) –: inspirational driving force in tropical African botany for 60 years
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Benchmarking long-read sequencing strategies for obtaining ASV-resolved rRNA operons from environmental microeukaryotes

Overgaard, Christina Karmisholt; Jamy, Mahwash; Radutoiu, Simona; Burki, Fabien et al.

Part of Molecular Ecology Resources, 2024

Article in journal

• DOI for Benchmarking long-read sequencing strategies for obtaining ASV-resolved rRNA operons from environmental microeukaryotes
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Pushing the boundaries of rare disease diagnostics with the help of the first Undiagnosed Hackathon

Delgado-Vega, Angelica Maria; Höijer, Ida; Corcoran, Pádraic; Lysenkova, Mariya et al.

Part of Nature Genetics, p. 2287-2294, 2024

Article in journal

• DOI for Pushing the boundaries of rare disease diagnostics with the help of the first Undiagnosed Hackathon

The genomes of all lungfish inform on genome expansion and tetrapod evolution

Schartl, Manfred; Woltering, Joost M.; Irisarri, Iker; Du, Kang et al.

Part of Nature, p. 96-103, 2024

Article in journal

• DOI for The genomes of all lungfish inform on genome expansion and tetrapod evolution

Orthopteran Neo-Sex Chromosomes Reveal Dynamics of Recombination Suppression and Evolution of Supergenes

Jayaprasad, Suvratha; Peona, Valentina; Ellerstrand, Simon J.; Rossini, Roberto et al.

Part of Molecular Ecology, 2024

Article in journal

• DOI for Orthopteran Neo-Sex Chromosomes Reveal Dynamics of Recombination Suppression and Evolution of Supergenes
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Phylogeny and systematics of Paramollugo (Molluginaceae)

Thulin, Mats; Bidault, Ehoarn; Boullet, Vincent; Heidari, Nahid et al.

Part of Candollea, p. 179-228, 2024

Article in journal

• DOI for Phylogeny and systematics of Paramollugo (Molluginaceae)
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A Phylogenomic Analysis of Genipa (Rubiaceae) Using Target Sequence Capture Data

Ridley, Rhonda; Persson, Claes; Oxelman, Bengt; Andermann, Tobias et al.

Part of Systematic Botany, p. 617-625, 2024

Article in journal

• DOI for A Phylogenomic Analysis of Genipa (Rubiaceae) Using Target Sequence Capture Data

Contemporary intergeneric hybridization and backcrossing among birds-of-paradise

Thörn, Filip; Soares, André; Müller, Ingo A.; Päckert, Martin et al.

Part of Evolution Letters, p. 680-694, 2024

Article in journal

• DOI for Contemporary intergeneric hybridization and backcrossing among birds-of-paradise
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Starships: a new frontier for fungal biology

Urquhart, Andrew S.; Vogan, Aaron A.; Gluck-Thaler, Emile

Part of Trends in Genetics, p. 1060-1073, 2024

Article, review/survey

• DOI for Starships: a new frontier for fungal biology

A new Calicium on Ramboldia

Tibell, Leif; Clayden, Stephen R.; Prieto, Maria; Wedin, Mats

Part of The Lichenologist, p. 301-307, 2024

Article in journal

• DOI for A new Calicium on Ramboldia
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Gene acquisition by giant transposons primes eukaryotes for rapid evolution via horizontal gene transfer

Urquhart, Andrew S.; Gluck-Thaler, Emile; Vogan, Aaron A.

Part of Science Advances, 2024

Article in journal

• DOI for Gene acquisition by giant transposons primes eukaryotes for rapid evolution via horizontal gene transfer
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Rebuttal to "(2943) Proposal to conserve Selaginella, nom. cons., (Selaginellaceae) with a conserved type": An unwarranted and disruptive idea

Valdespino, Ivan A.; Korall, Petra; Weststrand, Stina; Lopez, Christian A. et al.

Part of Taxon, p. 573-585, 2024

Article, review/survey

• DOI for Rebuttal to "(2943) Proposal to conserve Selaginella, nom. cons., (Selaginellaceae) with a conserved type": An unwarranted and disruptive idea

Herbationes Upsalienses – Var gick Linné med sina studenter?

Manktelow, Mariette; Gustafsson, Jan Helmer; Jacobson, Rolf

Part of Uppland 2024, Årsbok för medlemmarna av Upplands fornminnesförening och hembygdsförbund, p. 36-65, 2024

Article in journal

Herbationes Upsalienses

Manktelow, Mariette; Ström, Annika; von Linné, Carl

Part of Uppland 2024. Årsbok för medlemmarna av Upplands fornminnesförening och hembygdsförbund, p. 8-35, 2024

Article in journal

The Acrasis kona genome and developmental transcriptomes reveal deep origins of eukaryotic multicellular pathways

Sheikh, Sanea; Fu, Cheng-Jie; Brown, Matthew W.; Baldauf, Sandra L.

Part of Nature Communications, 2024

Article in journal

• DOI for The Acrasis kona genome and developmental transcriptomes reveal deep origins of eukaryotic multicellular pathways
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Study on the temporal and spatial distribution of Culex mosquitoes in Hanoi, Vietnam

Krambrich, Janina; Nguyen-Tien, Thang; Pham-Thanh, Long; Dang-Xuan, Sinh et al.

Part of Scientific Reports, 2024

Article in journal

• DOI for Study on the temporal and spatial distribution of Culex mosquitoes in Hanoi, Vietnam
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Genomic landscapes of divergence among island bird populations: Evidence of parallel adaptation but at different loci?

Martin, Claudia A.; Sheppard, Eleanor C.; Ali, Hisham A. A.; Illera, Juan Carlos et al.

Part of Molecular Ecology, 2024

Article in journal

• DOI for Genomic landscapes of divergence among island bird populations: Evidence of parallel adaptation but at different loci?
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Exploring Paleogene Tibet's warm temperate environments through target enrichment and phylogenetic niche modelling of Himalayan spiny frogs (Paini, Dicroglossidae)

Hofmann, Sylvia; Rödder, Dennis; Andermann, Tobias; Matschiner, Michael et al.

Part of Molecular Ecology, 2024

Article in journal

• DOI for Exploring Paleogene Tibet's warm temperate environments through target enrichment and phylogenetic niche modelling of Himalayan spiny frogs (Paini, Dicroglossidae)
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A multilocus phylogeny reveals two new species and two first reports of Backusella (Mucorales, Mucoromycota) in the New World

de Lima, Catarina Leticia Ferreira; Cordeiro, Thalline Rafhaella Leite; Urquhart, Andrew S.; Yadav, Lal Sahab et al.

Part of Mycological progress, 2024

Article in journal

• DOI for A multilocus phylogeny reveals two new species and two first reports of Backusella (Mucorales, Mucoromycota) in the New World

Systematic identification of cargo-mobilizing genetic elements reveals new dimensions of eukaryotic diversity

Gluck-Thaler, Emile; Vogan, Aaron A.

Part of Nucleic Acids Research, p. 5496-5513, 2024

Article in journal

• DOI for Systematic identification of cargo-mobilizing genetic elements reveals new dimensions of eukaryotic diversity
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The evolution of ectomycorrhizal symbiosis and host-plant switches are the main drivers for diversification of Amanitaceae (Agaricales, Basidiomycota)

Cai, Qing; Codjia, Jean Evans I.; Buyck, Bart; Cui, Yang-Yang et al.

Part of BMC Biology, 2024

Article in journal

• DOI for The evolution of ectomycorrhizal symbiosis and host-plant switches are the main drivers for diversification of Amanitaceae (Agaricales, Basidiomycota)
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Resurrection of Yeast From Historical Artefacts

Nielsen, Kevin

2024

Student thesis

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Ethnobotanical study of wild edible plants in the mountainous regions of Semnan Province, Iran

Jalali, Majid; Abedi, Mehdi; Memariani, Farshid; Ghorbani, Abdolbaset

Part of Journal of Ethnobiology and Ethnomedicine, 2024

Article in journal

• DOI for Ethnobotanical study of wild edible plants in the mountainous regions of Semnan Province, Iran
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Phylogenomics, divergence times and notes of orders in Basidiomycota

He, Mao-Qiang; Cao, Bin; Liu, Fei; Boekhout, Teun et al.

Part of Fungal diversity, p. 1-125, 2024

Article in journal

• DOI for Phylogenomics, divergence times and notes of orders in Basidiomycota

Chromosome-level genome assembly of the morabine grasshopper Vandiemenella viatica19

Li, Xuan; Jayaprasad, Suvratha; Einarsdottir, Elisabet; Cooper, Steven J. B. et al.

Part of Scientific Data, 2024

Article in journal

• DOI for Chromosome-level genome assembly of the morabine grasshopper Vandiemenella viatica19
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The conserved WetA protein involved in asexual development in fungi is localized to the nuclei in the asexual spores of Paecilomyces variotii

Chong, Nicholas F.; Urquhart, Andrew S.; Idnurm, Alexander

Part of Fungal Biology, p. 2073-2079, 2024

Article in journal

• DOI for The conserved WetA protein involved in asexual development in fungi is localized to the nuclei in the asexual spores of Paecilomyces variotii
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Morphological and molecular studies of bivalves to assess the hidden diversity of protistan parasites: Investigations of cryptic diseases in shellfish

Alfjorden, Anders

2024

Doctoral thesis, comprehensive summary

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Comparative genomics of Ascetosporea gives new insight into the evolutionary basis for animal parasitism in Rhizaria

Hiltunen Thorén, Markus; Onuț-Brännström, Ioana; Alfjorden, Anders; Pecková, Hana et al.

Part of BMC Biology, 2024

Article in journal

• DOI for Comparative genomics of Ascetosporea gives new insight into the evolutionary basis for animal parasitism in Rhizaria
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Ichthyosporea: a window into the origin of animals

Shabardina, Victoria; Dharamshi, Jennah E.; Ara, Patricia S.; Antó, Meritxell et al.

Part of Communications Biology, 2024

Article, review/survey

• DOI for Ichthyosporea: a window into the origin of animals
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Divergent evolution of male-determining loci on proto-Y chromosomes of the housefly

Li, Xuan; Visser, Sander; Son, Jae Hak; Geuverink, Elzemiek et al.

Part of Nature Communications, 2024

Article in journal

• DOI for Divergent evolution of male-determining loci on proto-Y chromosomes of the housefly
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High rate of gene family evolution in proximity to the origin of ectomycorrhizal symbiosis in Inocybaceae

Khan, Faheema Kalsoom; Sánchez-García, Marisol; Johannesson, Hanna; Ryberg, Martin

Part of New Phytologist, p. 219-234, 2024

Article in journal

• DOI for High rate of gene family evolution in proximity to the origin of ectomycorrhizal symbiosis in Inocybaceae
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Hybridization in birds-of-paradise: Widespread ancestral gene flow despite strong sexual selection in a lek-mating system

Blom, Mozes P. K.; Peona, Valentina; Prost, Stefan; Christidis, Les et al.

Part of iScience, 2024

Article in journal

• DOI for Hybridization in birds-of-paradise: Widespread ancestral gene flow despite strong sexual selection in a lek-mating system
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Planting long-lived trees in a warming climate: Theory shows the importance of stage-dependent climatic tolerance

Erlichman, Adèle; Sandell, Linnea; Otto, Sarah P.; Aitken, Sally N. et al.

Part of Evolutionary Applications, 2024

Article in journal

• DOI for Planting long-lived trees in a warming climate: Theory shows the importance of stage-dependent climatic tolerance
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Corydalis sunhangii (Papaveraceae): A new species from Xizang, China, based on plastome and morphological data

Chen, Jun-Tong; Lidén, Magnus; Huang, Xian-Han; Yang, Shun-Quan et al.

Part of Ecology and Evolution, 2024

Article in journal

• DOI for Corydalis sunhangii (Papaveraceae): A new species from Xizang, China, based on plastome and morphological data
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