Publikationer

Modeling of Biodiversity Dynamics After Forest Clear-cutting by Plot Aggregation

Wigren, Torbjörn; Zachariah, Dave; Jie, Vun Wen; Andermann, Tobias et al.

2026

Rapport

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Transcriptional divergence among different mating-type strains and their cross of Morchella sextelata during the asexual stage

Ling, Jia; Chen, Meng-Qian; Ryberg, Martin; Yang, Zhu L. et al.

Ingår i Fungal Biology, 2026

Artikel i tidskrift

• DOI för Transcriptional divergence among different mating-type strains and their cross of Morchella sextelata during the asexual stage

Quantifying the impact of forestry practices on biodiversity using causal inference methods

Jie, Vun Wen; Nyström, Jakob; Wigren, Torbjörn; Schön, Thomas B. et al.

2026

Konferensbidrag

Living in each other's pockets: insights into the life cycle of Tremella caloplacae s. l.

Freire-Rallo, Sandra; Tuovinen Nogerius, Veera; Wedin, Mats; Millanes, Ana M.

Ingår i IMA Fungus, 2026

Artikel i tidskrift

• DOI för Living in each other's pockets: insights into the life cycle of Tremella caloplacae s. l.
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Environmental phylogenetics supports a steady diversification of crown eukaryotes starting from the mid-Proterozoic

Sandin, Miguel M.; Cohen, Phoebe A.; Morlon, Helene; Burki, Fabien

Ingår i Proceedings of the National Academy of Sciences of the United States of America, 2026

Artikel i tidskrift

• DOI för Environmental phylogenetics supports a steady diversification of crown eukaryotes starting from the mid-Proterozoic
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Another dark taxon comes to light: Semicentenialomycetes, a new class within the Pucciniomycotina (Basidiomycota), and its first described representative, Semicentenialea rex

Tuovinen Nogerius, Veera; Sanchez-Garcia, Marisol; Kluting, Kerri; Heinonsalo, Jussi et al.

Ingår i IMA Fungus, 2026

Artikel i tidskrift

• DOI för Another dark taxon comes to light: Semicentenialomycetes, a new class within the Pucciniomycotina (Basidiomycota), and its first described representative, Semicentenialea rex
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Revealing the plastid symbioses in the marine centrohelid Meringosphaera: a novel model system for plastid evolution

Walraven, Anne

2026

Doktorsavhandling, sammanläggning

• Ladda ner fulltext (pdf) av Revealing the plastid symbioses in the marine centrohelid Meringosphaera: a novel model system for plastid evolution

Evaluating the rRNA operon as a universal eukaryotic marker using a nanopore-based metabarcoding workflow

Lassen, Linus

2026

Studentuppsats (Examensarbete)

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Experimental demonstration of horizontal gene transfer in fungi

Valová, Zuzana

2026

Studentuppsats (Examensarbete)

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Impacts of large herbivores on mycorrhizal fungal communities across the Arctic

Brachmann, Cole G.; Ryberg, Martin; Furneaux, Brendan R.; Rosling, Anna et al.

Ingår i Ecography, 2026

Artikel i tidskrift

• DOI för Impacts of large herbivores on mycorrhizal fungal communities across the Arctic
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Functional characterization of a CFEM domain-containing protein in the mycoparasitic fungus Clonostachys rosea reveals antimicrobial activity and a role in conidiation

Iliopoulos, Isaak; Samaras, Anastasios; Sigdel, Susmita; Forslund, Linnea et al.

Ingår i Molecular Genetics and Genomics, 2026

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• DOI för Functional characterization of a CFEM domain-containing protein in the mycoparasitic fungus Clonostachys rosea reveals antimicrobial activity and a role in conidiation
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Properties and Limitations of eDNA Substrates for Terrestrial Animal Monitoring

Zhao, Beilun; Andermann, Tobias

Ingår i Molecular Ecology Resources, 2026

Artikel, forskningsöversikt

• DOI för Properties and Limitations of eDNA Substrates for Terrestrial Animal Monitoring
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A taxonomic update of the genus Clavija (Theophrastaceae) in Colombia and Ecuador

Ståhl, Bertil

Ingår i Nordic Journal of Botany, 2026

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• DOI för A taxonomic update of the genus Clavija (Theophrastaceae) in Colombia and Ecuador
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NECTAR BARRIER FOR BIRDS IN ANISACANTHUS (ACANTHACEAE) - A KEYHOLE BARRIER

Manktelow, Mariette

Ingår i The Southwestern naturalist, s. 1-11, 2026

Artikel i tidskrift

• DOI för NECTAR BARRIER FOR BIRDS IN ANISACANTHUS (ACANTHACEAE) - A KEYHOLE BARRIER

The Apocynaceae: of the Arabian Peninsula and Socotra

Bruyns, Peter V.; Lidén, Magnus; Morrison, David A.

Uppsala University, 2026

Bok

Evolutionary Dynamics of Dosage Compensation and Sex-biased Gene Expression in Morabine Grasshopper Vandiemenella viatica

Jayaprasad, Suvratha; Schielzeth, Holger; Palacios-Gimenez, Octavio M.

Ingår i Genome Biology and Evolution, 2026

Artikel i tidskrift

• DOI för Evolutionary Dynamics of Dosage Compensation and Sex-biased Gene Expression in Morabine Grasshopper Vandiemenella viatica
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The evolutionary genomics of meiotic drive

Presgraves, Daven C.; Dawe, R. Kelly; Dyer, Kelly A.; Fishman, Lila et al.

Ingår i Molecular biology and evolution, 2026

Artikel, forskningsöversikt

• DOI för The evolutionary genomics of meiotic drive
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Phylogenomic tree of Cercozoa based on single-cell transcriptomes from 100 uncultured cells

Lax, Gordon; Cooney, Elizabeth C.; Zlatogursky, Vasily; Mtawali, Mahara et al.

Ingår i BMC Biology, 2026

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• DOI för Phylogenomic tree of Cercozoa based on single-cell transcriptomes from 100 uncultured cells
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Genomic Connectivity and Adaptation Signals of the Freshwater Sponge Ephydatia muelleri Across Its Distribution

de la Cruz-Castillejo, Laura; Cassidy, Robert; Mitsi, Konstantina; Galia-Camps, Carles et al.

Ingår i Journal of Biogeography, 2026

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• DOI för Genomic Connectivity and Adaptation Signals of the Freshwater Sponge Ephydatia muelleri Across Its Distribution
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Identification of a deep-branching lineage of algae using environmental plastid genomes

Jamy, Mahwash; Huber, Thomas; Antoine, Thibault; Ruscheweyh, Hans-Joachim et al.

Ingår i Nature Communications, 2026

Artikel i tidskrift

• DOI för Identification of a deep-branching lineage of algae using environmental plastid genomes
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B chromosome retrotransposed sequences persist through speciation, contributing to genomic and regulatory innovations in the fish genus Psalidodon (Characiformes, Acestrorhamphidae)

Lasmar, Lucas F.; Vidal, Mateus R.; Nadai, Pamela C. F.; Dos Santos, Rodrigo Zeni et al.

Ingår i PLOS ONE, 2026

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• DOI för B chromosome retrotransposed sequences persist through speciation, contributing to genomic and regulatory innovations in the fish genus Psalidodon (Characiformes, Acestrorhamphidae)
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The Apocynaceae of the Arabian Peninsula and Socotra

Bruyns, Peter

Acta Universitatis Upsaliensis, 2026

Bok

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First report of Hexamita nelsoni in blue mussel (Mytilus edulis): morphology, phylogeny, and host-parasite interaction

Alfjorden, Anders; Jerlström-Hultqvist, Jon; Svärd, Staffan; Burki, Fabien

Ingår i Journal of Invertebrate Pathology, 2026

Artikel i tidskrift

• DOI för First report of Hexamita nelsoni in blue mussel (Mytilus edulis): morphology, phylogeny, and host-parasite interaction

Chromosome-level assembly of the club-legged grasshopper (Gomphocerus sibiricus) genome

Palacios-Gimenez, Octavio M.; Varma, Mahendra; Cheng, Xinyi; Mosbech, Mai-Britt et al.

Ingår i G3, 2025

Artikel i tidskrift

• DOI för Chromosome-level assembly of the club-legged grasshopper (Gomphocerus sibiricus) genome
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Widespread potential for phototrophy and convergent reduction of lifecycle complexity in the dimorphic order Caulobacterales

Hallgren, Joel; Dharamshi, Jennah; Rodriguez-Gijon, Alejandro; Nuy, Julia et al.

Ingår i Nature Communications, 2025

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• DOI för Widespread potential for phototrophy and convergent reduction of lifecycle complexity in the dimorphic order Caulobacterales
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Fungal diversity notes 2017-2122: taxonomic and phylogenetic contributions to freshwater fungi and other fungal taxa

Dong, Wei; Hyde, Kevin D.; Jeewon, Rajesh; Karunarathna, Samantha C. et al.

Ingår i Fungal diversity, s. 185-459, 2025

Artikel i tidskrift

• DOI för Fungal diversity notes 2017-2122: taxonomic and phylogenetic contributions to freshwater fungi and other fungal taxa

Orkidéexplosion vid E4:an

Thulin, Mats

Ingår i Daphne, s. 5, 2025

Artikel i tidskrift

Ölandsstarr i Uppland, hur kan det ha gått till?

Thulin, Mats

Ingår i Svensk Botanisk Tidskrift, s. 274-281, 2025

Artikel i tidskrift

Pangeneric analyses reveal the divergent genome evolution and ecologies between morels and truffles in the Morchellaceae

Bonito, Gregory; Miyauchi, Shingo; Hayes, Richard D.; Tan, Hao et al.

Ingår i Current Biology, s. 4135-4150000000, 2025

Artikel i tidskrift

• DOI för Pangeneric analyses reveal the divergent genome evolution and ecologies between morels and truffles in the Morchellaceae

Early germline sequestration in a basidiomycete fungus

Hiltunen Thorén, Markus; Olsson, Boel; Vonk, Peter Jan; Siljestam, Mattias et al.

Ingår i Science, s. 720-723, 2025

Artikel i tidskrift

• DOI för Early germline sequestration in a basidiomycete fungus

The role of toxin/antidote genes in the maintenance and evolution of accessory chromosomes in Fusarium

Sandell, Linnea; Forsythe, Adrian; Mirandola, Anna; Jorayev, Samuel et al.

Ingår i Genetics, 2025

Artikel i tidskrift

• DOI för The role of toxin/antidote genes in the maintenance and evolution of accessory chromosomes in Fusarium
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The role of transposon activity in shaping cis-regulatory element evolution after whole-genome duplication

Monsen, Oystein; Gronvold, Lars; Datsomor, Alex; Harvey, Thomas et al.

Ingår i Genome Research, s. 475-488, 2025

Artikel i tidskrift

• DOI för The role of transposon activity in shaping cis-regulatory element evolution after whole-genome duplication

Scientific plant names derived from the surname of Pehr Forsskål: their histrory, orthography, legitimacy, and current use

Friis, Ib; Thulin, Mats

Det Kongelige Danske Videnskabernes Selskab, 2025

Bok

A taxonomic revision of the “Quadrispina clade” of Barleria sect. Prionitis

Defty, Ellie; Hatt, Sebastian; Thulin, Mats; Lidetu, Hanny et al.

Ingår i Webbia, s. 93-120, 2025

Artikel i tidskrift

• DOI för A taxonomic revision of the “Quadrispina clade” of Barleria sect. Prionitis
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Euphorbia balsamifera subsp. adenensis (Euphorbiaceae) new to Socotra and notes on its taxonomy

Thulin, Mats; Weber, Michael H.; Mubarak, Sami Ali Mohammed

Ingår i Nordic Journal of Botany, 2025

Artikel i tidskrift

• DOI för Euphorbia balsamifera subsp. adenensis (Euphorbiaceae) new to Socotra and notes on its taxonomy
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The Linnaean revolution - A history of the Natural System

Lidén, Magnus

Ingår i Taxon, s. 1011-1034, 2025

Artikel i tidskrift

• DOI för The Linnaean revolution - A history of the Natural System
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Accumulation of a Biparentally Inherited Neptune Transposable Element in Natural Killifish Hybrids (Fundulus diaphanus x F. heteroclitus)

Roussel, Alexandre-James; Suh, Alexander; Ruiz-Ruano, Francisco J.; Dion-Cote, Anne-Marie

Ingår i Molecular biology and evolution, 2025

Artikel i tidskrift

• DOI för Accumulation of a Biparentally Inherited Neptune Transposable Element in Natural Killifish Hybrids (Fundulus diaphanus x F. heteroclitus)
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A mosaic of modular variation at a single gene underpins convergent plumage coloration

Lutgen, Dave; Peona, Valentina; Chase, Madeline A.; Kakhki, Niloofar Alaei et al.

Ingår i Science, 2025

Artikel i tidskrift

• DOI för A mosaic of modular variation at a single gene underpins convergent plumage coloration

Estimating national Red List statuses for fungi in Sweden: An improved deep learning approach to account for unbalanced data

Gomes De Almeida, Filipe; Baggström, Adrian; Andermann, Tobias

Ingår i Ecological Informatics, 2025

Artikel i tidskrift

• DOI för Estimating national Red List statuses for fungi in Sweden: An improved deep learning approach to account for unbalanced data
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Evolution of Large Polymorphic Inversions in a Panmictic Songbird

Pei, Yifan; Forstmeier, Wolfgang; Suh, Alexander; Bambach, Lynn et al.

Ingår i Molecular biology and evolution, 2025

Artikel i tidskrift

• DOI för Evolution of Large Polymorphic Inversions in a Panmictic Songbird
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Examining the presence of photosymbionts in amphitremids and centrohelids

Billiau, Steffi

2025

Studentuppsats (Examensarbete)

Corydalis shiyomiensis (Papaveraceae), a new species from Arunachal Pradesh, India

Khanal, Madhusudhan; Sivaranjani, S.; Singpho, Jaseng; Sarkar, Shuvadip et al.

Ingår i Phytotaxa, s. 87-92, 2025

Artikel i tidskrift

• DOI för Corydalis shiyomiensis (Papaveraceae), a new species from Arunachal Pradesh, India

Protist genomics: key to understanding eukaryotic evolution

Schoenle, Alexandra; Francis, Ore; Archibald, John M.; Burki, Fabien et al.

Ingår i Trends in Genetics, s. 868-882, 2025

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• DOI för Protist genomics: key to understanding eukaryotic evolution
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Giant transposons promote strain heterogeneity in a major fungal pathogen

Gluck-Thaler, Emile; Forsythe, Adrian; Puerner, Charles; Gutierrez-Perez, Cecilia et al.

Ingår i mBio, 2025

Artikel i tidskrift

• DOI för Giant transposons promote strain heterogeneity in a major fungal pathogen
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Paulinella acadia sp. nov., a New Photosynthetic Species Isolated From a Brackish Beach in British Columbia (Canada)

Pardasani, Yash; Palka, Maia V.; Leander, Brian S.; Burki, Fabien

Ingår i Journal of Eukaryotic Microbiology, 2025

Artikel i tidskrift

• DOI för Paulinella acadia sp. nov., a New Photosynthetic Species Isolated From a Brackish Beach in British Columbia (Canada)
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Morphology, Systematics and Life Cycle of Ozanamia fimbriatus (Haptista: Centroplasthelida), With Notes on Evolution of Organic Skeleton in Centrohelids

Drachko, Daria; Zlatogursky, Vasily V.

Ingår i Journal of Eukaryotic Microbiology, 2025

Artikel i tidskrift

• DOI för Morphology, Systematics and Life Cycle of Ozanamia fimbriatus (Haptista: Centroplasthelida), With Notes on Evolution of Organic Skeleton in Centrohelids
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Metagenomic insights into the diet and past Kolyma Lowland habitat from the intestinal content of a Late Pleistocene steppe bison

Jin, Chenyu; Forsythe, Adrian; Balint, Miklos; Kienast, Frank et al.

Ingår i Quaternary Science Reviews, 2025

Artikel i tidskrift

• DOI för Metagenomic insights into the diet and past Kolyma Lowland habitat from the intestinal content of a Late Pleistocene steppe bison
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Boswellia oropedionis (Burseraceae) sp. nov., a frankincense tree from Socotra, and notes on B. ameero and B. bullata

Thulin, Mats; Weber, Michael H.; Mubarak, Sami Ali Mohammed

Ingår i Nordic Journal of Botany, 2025

Artikel i tidskrift

• DOI för Boswellia oropedionis (Burseraceae) sp. nov., a frankincense tree from Socotra, and notes on B. ameero and B. bullata
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Koenigia arunachalensis sp. nov. (Polygonaceae), a new species from Eastern Himalaya, India

Hajong, Bipankar; Lidén, Magnus; Bharali, Pankaj

Ingår i Nordic Journal of Botany, 2025

Artikel i tidskrift

• DOI för Koenigia arunachalensis sp. nov. (Polygonaceae), a new species from Eastern Himalaya, India

Few genetic loci control the green-brown colour polymorphism in the meadow grasshopper Pseudochorthippus parallelus

Varma, Mahendra; Winter, Gabe; Ebeling, Anne; Lehmann, Angela et al.

Ingår i Journal of Evolutionary Biology, s. 639-651, 2025

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• DOI för Few genetic loci control the green-brown colour polymorphism in the meadow grasshopper Pseudochorthippus parallelus
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