Rene Kaden

Twist-ONT: Combining nanopore sequencing with the twist comprehensive viral research panel

Haars, Jonathan; Cumlin, Tomas; Ladenvall, Claes; Lennerstrand, Johan et al.

Part of Virology, 2026

• DOI for Twist-ONT: Combining nanopore sequencing with the twist comprehensive viral research panel

Comprehensive transcriptome assessment in PBMCs of post-COVID patients at a median follow-up of 28 months after a mild COVID infection reveals upregulation of JAK/STAT signaling and a prolonged immune response

Fineschi, Serena; Klar, Joakim; Lopez Egido, Juan Ramon; Schuster, Jens et al.

Part of Frontiers in Immunology, 2025

• DOI for Comprehensive transcriptome assessment in PBMCs of post-COVID patients at a median follow-up of 28 months after a mild COVID infection reveals upregulation of JAK/STAT signaling and a prolonged immune response
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Dynamics of SARS-CoV-2 variants and mutations in Central Sweden between 2023 and 2024 and their potential implications on monoclonal antibodies pemivibart and sipavibart as PrEP in the region

Haars, Jonathan; Wallin, Frans; Elfving, Karin; Jonsson, Anna-Karin et al.

Part of Infectious Diseases, p. 956-965, 2025

• DOI for Dynamics of SARS-CoV-2 variants and mutations in Central Sweden between 2023 and 2024 and their potential implications on monoclonal antibodies pemivibart and sipavibart as PrEP in the region
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Nationwide multicentre study of Nanopore long-read sequencing for 16S rRNA-species identification

Brunet, Sofia; Grankvist, Anna; Jaen-Luchoro, Daniel; Bergdahl, Maria et al.

Part of European Journal of Clinical Microbiology and Infectious Diseases, p. 1907-1916, 2025

• DOI for Nationwide multicentre study of Nanopore long-read sequencing for 16S rRNA-species identification
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Evaluation of nationwide analysis surveillance for methicillin-resistant Staphylococcus aureus within Genomic Medicine Sweden

Hallbäck, Erika Tång; Björkman, Jonas T.; Dyrkell, Fredrik; Welander, Jenny et al.

Part of Microbial Genomics, 2025

• DOI for Evaluation of nationwide analysis surveillance for methicillin-resistant Staphylococcus aureus within Genomic Medicine Sweden
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Twist-ONT: Combining nanopore sequencing with the twist comprehensive viral research panel

Haars, Jonathan; Cumlin, Tomas; Ladenvall, Claes; Lennerstrand, Johan et al.

Part of Virology, 2026

• DOI for Twist-ONT: Combining nanopore sequencing with the twist comprehensive viral research panel

Comprehensive transcriptome assessment in PBMCs of post-COVID patients at a median follow-up of 28 months after a mild COVID infection reveals upregulation of JAK/STAT signaling and a prolonged immune response

Fineschi, Serena; Klar, Joakim; Lopez Egido, Juan Ramon; Schuster, Jens et al.

Part of Frontiers in Immunology, 2025

• DOI for Comprehensive transcriptome assessment in PBMCs of post-COVID patients at a median follow-up of 28 months after a mild COVID infection reveals upregulation of JAK/STAT signaling and a prolonged immune response
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Dynamics of SARS-CoV-2 variants and mutations in Central Sweden between 2023 and 2024 and their potential implications on monoclonal antibodies pemivibart and sipavibart as PrEP in the region

Haars, Jonathan; Wallin, Frans; Elfving, Karin; Jonsson, Anna-Karin et al.

Part of Infectious Diseases, p. 956-965, 2025

• DOI for Dynamics of SARS-CoV-2 variants and mutations in Central Sweden between 2023 and 2024 and their potential implications on monoclonal antibodies pemivibart and sipavibart as PrEP in the region
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Nationwide multicentre study of Nanopore long-read sequencing for 16S rRNA-species identification

Brunet, Sofia; Grankvist, Anna; Jaen-Luchoro, Daniel; Bergdahl, Maria et al.

Part of European Journal of Clinical Microbiology and Infectious Diseases, p. 1907-1916, 2025

• DOI for Nationwide multicentre study of Nanopore long-read sequencing for 16S rRNA-species identification
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Evaluation of nationwide analysis surveillance for methicillin-resistant Staphylococcus aureus within Genomic Medicine Sweden

Hallbäck, Erika Tång; Björkman, Jonas T.; Dyrkell, Fredrik; Welander, Jenny et al.

Part of Microbial Genomics, 2025

• DOI for Evaluation of nationwide analysis surveillance for methicillin-resistant Staphylococcus aureus within Genomic Medicine Sweden
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From SARS-CoV-2 to Global Preparedness: A Graphical Interface for Standardised High-Throughput Bioinformatics Analysis in Pandemic Scenarios and Surveillance of Drug Resistance

Cumlin, Tomas; Karlsson, Ida; Haars, Jonathan; Rosengren, Maria et al.

Part of International Journal of Molecular Sciences, 2024

• DOI for From SARS-CoV-2 to Global Preparedness: A Graphical Interface for Standardised High-Throughput Bioinformatics Analysis in Pandemic Scenarios and Surveillance of Drug Resistance
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SNP-based high-resolution typing of Chlamydia psittaci from humans and wild birds in Sweden: circulation of the Mat116 genotype reveals the transmission mode to humans

Herrmann, Björn; Aaziz, Rachid; Kaden, René; Riedel, Hilde M. et al.

Part of Microbes and infection, 2024

• DOI for SNP-based high-resolution typing of Chlamydia psittaci from humans and wild birds in Sweden: circulation of the Mat116 genotype reveals the transmission mode to humans
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Prevalence of SARS-CoV-2 Omicron Sublineages and Spike Protein Mutations Conferring Resistance against Monoclonal Antibodies in a Swedish Cohort during 2022–2023

Haars, Jonathan; Palanisamy, Navaneethan; Wallin, Frans; Mölling, Paula et al.

Part of Microorganisms, 2023

• DOI for Prevalence of SARS-CoV-2 Omicron Sublineages and Spike Protein Mutations Conferring Resistance against Monoclonal Antibodies in a Swedish Cohort during 2022–2023
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SARS-CoV-2 variants of concern and spike protein mutational dynamics in a Swedish cohort during 2021, studied by Nanopore sequencing

Mannsverk, Steinar; Bergholm, Julia; Palanisamy, Navaneethan; Ellström, Patrik et al.

Part of Virology Journal, 2022

• DOI for SARS-CoV-2 variants of concern and spike protein mutational dynamics in a Swedish cohort during 2021, studied by Nanopore sequencing
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Cold case: The disappearance of Egypt bee virus, a fourth distinct master strain of deformed wing virus linked to honeybee mortality in 1970's Egypt

de Miranda, Joachim R.; Brettell, Laura E.; Chejanovsky, Nor; Childers, Anna K. et al.

Part of Virology Journal, 2022

• DOI for Cold case: The disappearance of Egypt bee virus, a fourth distinct master strain of deformed wing virus linked to honeybee mortality in 1970's Egypt
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In-Flight Transmission of a SARS-CoV-2 Lineage B.1.617.2 Harbouring the Rare S:E484Q Immune Escape Mutation

Martinell, Mats; Andersson, Tanja; Mannsverk, Steinar Smorholm; Bergholm, Julia et al.

Part of Viruses, 2022

• DOI for In-Flight Transmission of a SARS-CoV-2 Lineage B.1.617.2 Harbouring the Rare S:E484Q Immune Escape Mutation
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Early Phylogenetic Diversification of SARS-CoV-2: Determination of Variants and the Effect on Epidemiology, Immunology, and Diagnostics

Kaden, Rene

Part of Journal of Clinical Medicine, p. 1615-1621, 2020

• DOI for Early Phylogenetic Diversification of SARS-CoV-2: Determination of Variants and the Effect on Epidemiology, Immunology, and Diagnostics
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Genomic and Phenotypic Characterisation of Campylobacter jejuni Isolates From a Waterborne Outbreak

Davies, Emma; Ebbesen, Marit; Johansson, Cecilia; Kaden, Rene et al.

Part of Frontiers in Cellular and Infection Microbiology, 2020

• DOI for Genomic and Phenotypic Characterisation of Campylobacter jejuni Isolates From a Waterborne Outbreak
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Differences in virulence gene expression between human blood and stool Campylobacter coli clade 1 ST828CC isolates

Johansson, Cecilia; Nilsson, Anna; Kaden, Rene; Rautelin, Hilpi

Part of Gut Pathogens, 2019

• DOI for Differences in virulence gene expression between human blood and stool Campylobacter coli clade 1 ST828CC isolates
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Campylobacter coli clade 3 isolates induce rapid cell death in vitro

Johansson, Cecilia; Nilsson, Anna J. E.; Kaden, Rene; Rautelin, Hilpi

Part of Applied and Environmental Microbiology, 2019

• DOI for Campylobacter coli clade 3 isolates induce rapid cell death in vitro

Staphylococcus argenteus and Staphylococcus schweitzeri are cytotoxic to human cells in vitro due to high expression of alpha-hemolysin Hla

Johansson, Cecilia; Rautelin, Hilpi; Kaden, Rene

Part of Virulence, p. 502-510, 2019

• DOI for Staphylococcus argenteus and Staphylococcus schweitzeri are cytotoxic to human cells in vitro due to high expression of alpha-hemolysin Hla
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Which methods are appropriate for the detection of Staphylococcus argenteus and is it worthwhile to distinguish S. argenteus from S. aureus?

Kaden, Rene; Engstrand, Lars; Rautelin, Hilpi; Johansson, Cecilia

Part of Infection and Drug Resistance, p. 2335-2344, 2018

• DOI for Which methods are appropriate for the detection of Staphylococcus argenteus and is it worthwhile to distinguish S. argenteus from S. aureus?
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Brucella abortus: determination of survival times and evaluation of methods for detection in several matrices

Kaden, Rene; Ferrari, Sevinc; Jinnerot, Tomas; Lindberg, Martina et al.

Part of BMC Infectious Diseases, 2018

• DOI for Brucella abortus: determination of survival times and evaluation of methods for detection in several matrices
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Characterization of Swedish Campylobacter coli clade 2 and clade 3 water isolates

Nilsson, Anna; Skarp, Astrid; Johansson, Cecilia; Kaden, Rene et al.

Part of MicrobiologyOpen, 2018

• DOI for Characterization of Swedish Campylobacter coli clade 2 and clade 3 water isolates
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Survival of Campylobacter jejuni and C. coli water isolates in lake and well water

Nilsson, Anna; Johansson, Cecilia; Skarp, Astrid; Kaden, Rene et al.

Part of Acta Pathologica, Microbiologica et Immunologica Scandinavica (APMIS), p. 762-770, 2018

• DOI for Survival of Campylobacter jejuni and C. coli water isolates in lake and well water

A novel real-time PCR assay for specific detection of Brucella melitensis

Kaden, René; Ferrari, Sevinc; Alm, Erik; Wahab, Tara

Part of BMC Infectious Diseases, 2017

• DOI for A novel real-time PCR assay for specific detection of Brucella melitensis
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Genomic and phenotypic characteristics of Swedish C. jejuni water isolates

Nilsson, Anna; Johansson, Cecilia; Skarp, Astrid; Kaden, Rene et al.

Part of PLOS ONE, 2017

• DOI for Genomic and phenotypic characteristics of Swedish C. jejuni water isolates
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First case of human bacteraemia by Catabacter hongkongensis in Scandinavia

Kaden, Rene; Thelander, Marie; Engstrand, Lars; Herrmann, Björn

Part of New Microbes and New Infections, p. 6-8, 2017

• DOI for First case of human bacteraemia by Catabacter hongkongensis in Scandinavia
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Time to review the gold standard for genotyping vancomycin-resistant enterococci in epidemiology: Comparing whole-genome sequencing with PFGE and MLST in three suspected outbreaks in Sweden during 2013–2015

Lytsy, Birgitta; Engstrand, Lars; Gustafsson, Åke; Kaden, Rene

Part of Infection, Genetics and Evolution, p. 74-80, 2017

• DOI for Time to review the gold standard for genotyping vancomycin-resistant enterococci in epidemiology: Comparing whole-genome sequencing with PFGE and MLST in three suspected outbreaks in Sweden during 2013–2015
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GI_FeGSH: A New Genomic Island Might Explain the Differences in Brucella Virulence

Wahab, Tara; Skarp, Astrid; Båverud, Viveca; Kaden, Rene

Part of Open Journal of Animal Sciences, p. 141-148, 2017

• DOI for GI_FeGSH: A New Genomic Island Might Explain the Differences in Brucella Virulence
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Accessory genetic content in Campylobacter jejuni ST21CC isolates from feces and blood

Skarp, Astrid; Akinrinade, O; Kaden, Rene; Johansson, Cecilia et al.

Part of International Journal of Medical Microbiology, p. 233-240, 2017

• DOI for Accessory genetic content in Campylobacter jejuni ST21CC isolates from feces and blood
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Massilia norwichensis sp. nov., isolated from an air sample

Orthová, Ivana; Kämpfer, Peter; Glaeser, Stefanie P.; Kaden, René et al.

Part of International Journal of Systematic and Evolutionary Microbiology, p. 56-64, 2015

• DOI for Massilia norwichensis sp. nov., isolated from an air sample

How to Show the Real Microbial Biodiversity? A Comparison of Seven DNA Extraction Methods for Bacterial Population Analyses in Matrices Containing Highly Charged Natural Nanoparticles

Kaden, Rene; Krolla-Sidenstein, Peter

Part of Microorganisms, p. 695-706, 2015

• DOI for How to Show the Real Microbial Biodiversity? A Comparison of Seven DNA Extraction Methods for Bacterial Population Analyses in Matrices Containing Highly Charged Natural Nanoparticles
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Rhodoferax saidenbachensis sp. nov., a psychrotolerant, very slowly growing bacterium within the family Comamonadaceae, proposal of appropriate taxonomic position of Albidiferax ferrireducens strain T118T in the genus Rhodoferax and emended description of the genus Rhodoferax

Kaden, Rene; Sproer, Cathrin; Beyer, Daniel; Krolla-Sidenstein, Peter

Part of International Journal of Systematic and Evolutionary Microbiology, p. 1186-1193, 2014

• DOI for Rhodoferax saidenbachensis sp. nov., a psychrotolerant, very slowly growing bacterium within the family Comamonadaceae, proposal of appropriate taxonomic position of Albidiferax ferrireducens strain T118T in the genus Rhodoferax and emended description of the genus Rhodoferax

Whole-Genome Sequence of Brucella canis Strain SVA13, Isolated from an Infected Dog

Kaden, Rene; Ågren, Joakim; Ferrari, Sevinc; Lindberg, Martina et al.

Part of Genome Announcements, 2014

• DOI for Whole-Genome Sequence of Brucella canis Strain SVA13, Isolated from an Infected Dog
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Draft Genome Sequences of Brucella suis Biovar 4 Strain NCTC 10385, Brucella ceti Strain NCTC 12891T, Brucella inopinata Strain CAMP 6436T, and Brucella neotomae Strain ATCC 23459T

Wahab, Tara; Ferrari, Sevinc; Lindberg, Martina; Bäckman, Stina et al.

Part of Genome Announcements, 2014

• DOI for Draft Genome Sequences of Brucella suis Biovar 4 Strain NCTC 10385, Brucella ceti Strain NCTC 12891T, Brucella inopinata Strain CAMP 6436T, and Brucella neotomae Strain ATCC 23459T
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Application of the Dynamic Cultivation System for Microorganisms – a new way to culture the unculturables

Kaden, Rene; Menger-Krug, Eve; Emmerich, Katja; Petrick, Kerstin et al.

Part of Clays and clay minerals, p. 203-210, 2014

• DOI for Application of the Dynamic Cultivation System for Microorganisms – a new way to culture the unculturables

Brucellosis outbreak in a Swedish kennel in 2013: Determination of genetic markers for source tracing

Kaden, Rene; Ågren, Joakim; Båverud, Viveca; Hallgren, Gunilla et al.

Part of Veterinary Microbiology, p. 523-530, 2014

• DOI for Brucellosis outbreak in a Swedish kennel in 2013: Determination of genetic markers for source tracing

The Dynamic Cultivation System: A new method for the detection of temporal shifts in microbial community structure in clay

Kaden, Rene; Menger-Krug, Eve; Emmerich, Katja; Petrick, Kerstin et al.

Part of Applied Clay Science, p. 53-56, 2012

• DOI for The Dynamic Cultivation System: A new method for the detection of temporal shifts in microbial community structure in clay

Character and amount of I–S mixed-layer minerals and physical–chemical parameters of two ceramic clays from Westerwald, Germany: Implications for processing properties

Petrick, Kerstin; Diedel, Ralf; Peuker, Miriam; Dieterle, Matthias et al.

Part of Clays and clay minerals, p. 58-74, 2011

Comprehensive material characterisation of clay mineral raw materials for the development of microbiological processing technologies

Emmerich, Katja; Schuhmann, Reiner; Petrick, Kerstin; Menger-Krug, Eve et al.

Part of CFI. Ceramic forum international, p. 29-34, 2009

Harmonisering av odling och PCR detektion av Brucella

Kaden, René; Ferrari, Sevinc; Lindberg, Martina; Bäckman, Stina et al.

MSB, 2014

Mikrobiologische Charakterisierung von Tonrohstoffen unter Berücksichtigung des Alterationsprozesses Mauken

Kaden, Rene

Disserta publishing house, 2011

Mikrobiologische Gewässeranalytik

Kaden, René

Diplomica Verlag, 2009

Methoden zur Charakterisierung mikrobieller Populationen in Tonrohstoffen unterschiedlichen Alters

Kaden, Rene; Petrick, Kerstin; Emmerich, Katja; Menger-Krug, Eve et al.

Part of Innovative Feuchtemessung in Forschung und Praxis - Materialeigenschaften und Prozesse, KIT, 2010

Why do two apparently similar German ceramic clays display different rheological properties during maturation?

Petrick, Kerstin; Emmerich, Katja; Menger-Krug, Eve; Kaden, Rene et al.

p. 128, 2008