Anders Isaksson

Molecular classification of microsatellite-instable colorectal cancers reveals distinct predictors of immunotherapy response

Lin, C.; Luo, T.; Wu, M.; Li, F. et al.

Part of ESMO Gastrointestinal Oncology, 2025

• DOI for Molecular classification of microsatellite-instable colorectal cancers reveals distinct predictors of immunotherapy response
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Tissue-resident microbiota impacts colorectal cancer progression and prognosis

Shi, Zhun; Ren, Huahui; Lin, Cong; Li, Fuqiang et al.

Part of Nature Communications, 2025

• DOI for Tissue-resident microbiota impacts colorectal cancer progression and prognosis
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Plasma-Derived Extracellular Vesicle-Propagated microRNA From Aortic Stenosis Patients Render Pro-Calcifying Effects on Valve Interstitial Cells

Khandagale, Avinash B.; Corcoran, Pádraic; Dan, Yuzhen; Isaksson, Anders et al.

Part of JACC: Basic to Translational Science, 2025

• DOI for Plasma-Derived Extracellular Vesicle-Propagated microRNA From Aortic Stenosis Patients Render Pro-Calcifying Effects on Valve Interstitial Cells
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Distribution and prognostic impacts of enterobacteriaceae-derived virulence factor genes in colorectal cancer

Shi, Zhun; Zhu, Ting; Ren, Huahui; Li, Fuqiang et al.

Part of Gut, 2025

• DOI for Distribution and prognostic impacts of enterobacteriaceae-derived virulence factor genes in colorectal cancer

MircoRNA in Extracellular Vesicles from Patients with Pulmonary Arterial Hypertension Alters Endothelial Angiogenic Response

Khandagale, Avinash; Corcoran, Pádraic; Nikpour, Maryam; Isaksson, Anders et al.

Part of International Journal of Molecular Sciences, 2022

• DOI for MircoRNA in Extracellular Vesicles from Patients with Pulmonary Arterial Hypertension Alters Endothelial Angiogenic Response
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Molecular classification of microsatellite-instable colorectal cancers reveals distinct predictors of immunotherapy response

Lin, C.; Luo, T.; Wu, M.; Li, F. et al.

Part of ESMO Gastrointestinal Oncology, 2025

• DOI for Molecular classification of microsatellite-instable colorectal cancers reveals distinct predictors of immunotherapy response
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Tissue-resident microbiota impacts colorectal cancer progression and prognosis

Shi, Zhun; Ren, Huahui; Lin, Cong; Li, Fuqiang et al.

Part of Nature Communications, 2025

• DOI for Tissue-resident microbiota impacts colorectal cancer progression and prognosis
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Plasma-Derived Extracellular Vesicle-Propagated microRNA From Aortic Stenosis Patients Render Pro-Calcifying Effects on Valve Interstitial Cells

Khandagale, Avinash B.; Corcoran, Pádraic; Dan, Yuzhen; Isaksson, Anders et al.

Part of JACC: Basic to Translational Science, 2025

• DOI for Plasma-Derived Extracellular Vesicle-Propagated microRNA From Aortic Stenosis Patients Render Pro-Calcifying Effects on Valve Interstitial Cells
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Distribution and prognostic impacts of enterobacteriaceae-derived virulence factor genes in colorectal cancer

Shi, Zhun; Zhu, Ting; Ren, Huahui; Li, Fuqiang et al.

Part of Gut, 2025

• DOI for Distribution and prognostic impacts of enterobacteriaceae-derived virulence factor genes in colorectal cancer

MircoRNA in Extracellular Vesicles from Patients with Pulmonary Arterial Hypertension Alters Endothelial Angiogenic Response

Khandagale, Avinash; Corcoran, Pádraic; Nikpour, Maryam; Isaksson, Anders et al.

Part of International Journal of Molecular Sciences, 2022

• DOI for MircoRNA in Extracellular Vesicles from Patients with Pulmonary Arterial Hypertension Alters Endothelial Angiogenic Response
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FOXP3+ T cells in uterine sarcomas are associated with favorable prognosis, low extracellular matrix expression and reduced YAP activation

Gultekin, Okan; Gonzalez-Molina, Jordi; Hardell, Elin; Moyano-Galceran, Lidia et al.

Part of npj Precision Oncology, 2021

• DOI for FOXP3+ T cells in uterine sarcomas are associated with favorable prognosis, low extracellular matrix expression and reduced YAP activation
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Genomic and transcriptomic features of dermatofibrosarcoma protuberans: Unusual chromosomal origin of the COL1A1-PDGFB fusion gene and synergistic effects of amplified regions in tumor development

Koster, Jan; Arbajian, Elsa; Viklund, Björn; Isaksson, Anders et al.

Part of Cancer Genetics, p. 34-41, 2020

• DOI for Genomic and transcriptomic features of dermatofibrosarcoma protuberans: Unusual chromosomal origin of the COL1A1-PDGFB fusion gene and synergistic effects of amplified regions in tumor development
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Inter- and intra-breed genome-wide copy number diversity in a large cohort of European equine breeds

Sole, Marina; Ablondi, Michela; Binzer, Amrei; Velie, Brandon D. et al.

Part of BMC Genomics, 2019

• DOI for Inter- and intra-breed genome-wide copy number diversity in a large cohort of European equine breeds
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Gains of Chromosome 1p and 15q are Associated with Poor Survival After Cytoreductive Surgery and HIPEC for Treating Colorectal Peritoneal Metastases

Enblad, Malin; Graf, Wilhelm; Terman, Alexei; Pucholt, Pascal et al.

Part of Annals of Surgical Oncology, p. 4835-4842, 2019

• DOI for Gains of Chromosome 1p and 15q are Associated with Poor Survival After Cytoreductive Surgery and HIPEC for Treating Colorectal Peritoneal Metastases
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Integrated Molecular Analysis of Undifferentiated Uterine Sarcomas Reveals Clinically Relevant Molecular Subtypes

Binzer-Panchal, Amrei; Hardell, Elin; Viklund, Björn; Ghaderi, Mehran et al.

Part of Clinical Cancer Research, p. 2155-2165, 2019

• DOI for Integrated Molecular Analysis of Undifferentiated Uterine Sarcomas Reveals Clinically Relevant Molecular Subtypes

Four evolutionary trajectories underlie genetic intratumoral variation in childhood cancer

Karlsson, Jenny; Valind, Anders; Mengelbier, Linda Holmquist; Bredin, Sofia et al.

Part of Nature Genetics, p. 944-950, 2018

• DOI for Four evolutionary trajectories underlie genetic intratumoral variation in childhood cancer

Different patterns of clonal evolution among different sarcoma subtypes followed for up to 25 years

Hofvander, Jakob; Viklund, Björn; Isaksson, Anders; Brosjo, Otte et al.

Part of Nature Communications, 2018

• DOI for Different patterns of clonal evolution among different sarcoma subtypes followed for up to 25 years
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Mutation, methylation, and gene expression profiles in dup(1q)-positive pediatric B-cell precursor acute lymphoblastic leukemia

Gunnarsson, Rebeqa; DiLorenzo, Sebastian; Lundin-Ström, Kristina B.; Olsson, Linda et al.

Part of Leukemia, p. 2117-2125, 2018

• DOI for Mutation, methylation, and gene expression profiles in dup(1q)-positive pediatric B-cell precursor acute lymphoblastic leukemia
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Primary glioblastoma cells for precision medicine: a quantitative portrait of genomic (in)stability during the first 30 passages

Baskaran, Sathishkumar; Mayrhofer, Markus; Göransson Kultima, Hanna; Bergström, Tobias et al.

Part of Neuro-Oncology, p. 1080-1091, 2018

• DOI for Primary glioblastoma cells for precision medicine: a quantitative portrait of genomic (in)stability during the first 30 passages
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Increased Calcium Influx through L-type Calcium Channels in Human and Mouse Neural Progenitors Lacking Fragile X Mental Retardation Protein

Danesi, Claudia; Achuta, Venkat Swaroop; Corcoran, Pádraic; Peteri, Ulla-Kaisa et al.

Part of Stem Cell Reports, p. 1449-1461, 2018

• DOI for Increased Calcium Influx through L-type Calcium Channels in Human and Mouse Neural Progenitors Lacking Fragile X Mental Retardation Protein
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Scattered genomic amplification in dedifferentiated liposarcoma

Mandahl, Nils; Magnusson, Linda; Nilsson, Jenny; Viklund, Björn et al.

Part of Molecular Cytogenetics, 2017

• DOI for Scattered genomic amplification in dedifferentiated liposarcoma
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Somatic Ephrin Receptor Mutations Are Associated with Metastasis in Primary Colorectal Cancer

Mathot, Lucy; Kundu, Snehangshu; Ljungström, Viktor; Svedlund, Jessica et al.

Part of Cancer Research, p. 1730-1740, 2017

• DOI for Somatic Ephrin Receptor Mutations Are Associated with Metastasis in Primary Colorectal Cancer

DNA METHYLATION PROFILING IN CHRONIC LYMPHOCYTIC LEUKEMIA PATIENTS CARRYING STEREOTYPED B-CELL RECEPTORS: A DIFFERENT CELLULAR ORIGIN FOR SUBSET #2?

Bhoi, Sujata; Mansouri, Larry; Castellano, G.; Sutton, Lesley Ann et al.

Part of Haematologica, p. 68-68, 2017

Gene expression profiles in preterm infants on continuous long-term oxygen therapy suggest reduced oxidative stress-dependent signaling during hypoxia

Kalikstad, Betty; Göransson Kultima, Hanna; Andersstuen, Terese Kristoffersen; Klungland, Arne et al.

Part of Molecular Medicine Reports, p. 1513-1526, 2017

• DOI for Gene expression profiles in preterm infants on continuous long-term oxygen therapy suggest reduced oxidative stress-dependent signaling during hypoxia
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Rawcopy: Improved copy number analysis with Affymetrix arrays

Mayrhofer, Markus; Viklund, Björn; Isaksson, Anders

Part of Scientific Reports, 2016

• DOI for Rawcopy: Improved copy number analysis with Affymetrix arrays
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Intratumoral genome diversity parallels progression and predicts outcome in pediatric cancer

Mengelbier, Linda Holmquist; Karlsson, Jenny; Lindgren, David; Valind, Anders et al.

Part of Nature Communications, 2015

• DOI for Intratumoral genome diversity parallels progression and predicts outcome in pediatric cancer

Microsatellite instability and mutations in BRAF and KRAS are significant predictors of disseminated disease in colon cancer

Birgisson, Helgi; Edlund, Karolina; Wallin, Ulrik; Påhlman, Lars et al.

Part of BMC Cancer, 2015

• DOI for Microsatellite instability and mutations in BRAF and KRAS are significant predictors of disseminated disease in colon cancer
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Spatiotemporal Heterogeneity Characterizes the Genetic Landscape of Pheochromocytoma and Defines Early Events in Tumorigenesis.

Crona, Joakim; Backman, Samuel; Maharjan, Rajani; Mayrhofer, Markus et al.

Part of Clinical Cancer Research, p. 4451-4460, 2015

• DOI for Spatiotemporal Heterogeneity Characterizes the Genetic Landscape of Pheochromocytoma and Defines Early Events in Tumorigenesis.

Genomic Complexity Profiling Reveals That HORMAD1 Overexpression Contributes to Homologous Recombination Deficiency in Triple-Negative Breast Cancers

Watkins, Johnathan; Weekes, Daniel; Shah, Vandna; Gazinska, Patrycja et al.

Part of Cancer Discovery, p. 488-505, 2015

• DOI for Genomic Complexity Profiling Reveals That HORMAD1 Overexpression Contributes to Homologous Recombination Deficiency in Triple-Negative Breast Cancers

1p36 deletion is a marker for tumour dissemination in microsatellite stable stage II-III colon cancer

Mayrhofer, Markus; Kultima, Hanna Göransson; Birgisson, Helgi; Sundström, Magnus et al.

Part of BMC Cancer, p. 872, 2014

• DOI for 1p36 deletion is a marker for tumour dissemination in microsatellite stable stage II-III colon cancer
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450K-array analysis of chronic lymphocytic leukemia cells reveals global DNA methylation to be relatively stable over time and similar in resting and proliferative compartments.

Cahill, Nicola; Bergh, A-C; Kanduri, M; Göransson-Kultima, H et al.

Part of Leukemia, p. 150-158, 2013

• DOI for 450K-array analysis of chronic lymphocytic leukemia cells reveals global DNA methylation to be relatively stable over time and similar in resting and proliferative compartments.

Synergistic interactions between camptothecin and EGFR or RAC1 inhibitors and between imatinib and Notch signaling or RAC1 inhibitors in glioblastoma cell lines

Sooman, Linda; Ekman, Simon; Andersson, Claes; Kultima, Hanna Göransson et al.

Part of Cancer Chemotherapy and Pharmacology, p. 329-340, 2013

• DOI for Synergistic interactions between camptothecin and EGFR or RAC1 inhibitors and between imatinib and Notch signaling or RAC1 inhibitors in glioblastoma cell lines

Behavioural and Brain Gene Expression Profiling in Pigs during Tail Biting Outbreaks - Evidence of a Tail Biting Resistant Phenotype

Brunberg, Emma; Jensen, Per; Isaksson, Anders; Keeling, Linda J.

Part of PLOS ONE, 2013

• DOI for Behavioural and Brain Gene Expression Profiling in Pigs during Tail Biting Outbreaks - Evidence of a Tail Biting Resistant Phenotype
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Patchwork: allele-specific copy number analysis of whole-genome sequenced tumor tissue

Mayrhofer, Markus; DiLorenzo, Sebastian; Isaksson, Anders

Part of Genome Biology, 2013

• DOI for Patchwork: allele-specific copy number analysis of whole-genome sequenced tumor tissue
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Brain gene expression differences are associated with abnormal tail biting behavior in pigs

Brunberg, E.; Jensen, P.; Isaksson, Anders; Keeling, L. J.

Part of Genes, Brain and Behavior, p. 275-281, 2013

• DOI for Brain gene expression differences are associated with abnormal tail biting behavior in pigs

Loss-of-heterozygosity on chromosome 19q in early-stage serous ovarian cancer is associated with recurrent disease

Skírnisdóttir, Ingiridur; Mayrhofer, Markus; Rydåker, Maria; Åkerud, Helena et al.

Part of BMC Cancer, p. 407, 2012

• DOI for Loss-of-heterozygosity on chromosome 19q in early-stage serous ovarian cancer is associated with recurrent disease
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Mantle cell lymphoma displays a homogenous methylation profile: A comparative analysis with chronic lymphocytic leukemia

Halldorsdottir, Anna Margret; Kanduri, Meena; Marincevic, Millaray; Mansouri, Larry et al.

Part of American Journal of Hematology, p. 361-367, 2012

• DOI for Mantle cell lymphoma displays a homogenous methylation profile: A comparative analysis with chronic lymphocytic leukemia

Synergistic Effects of PI3K or P38 MAPK Inhibition in Combination With Vandetanib Treatment in Glioblastoma Cells

Sooman, Linda; Ekman, Simon; Andersson, Claes; Johansson, Fredrik et al.

Part of European Journal of Cancer, 2012

• DOI for Synergistic Effects of PI3K or P38 MAPK Inhibition in Combination With Vandetanib Treatment in Glioblastoma Cells

A comprehensive analysis of human gene expression profiles identifies stromal immunoglobulin kappa C as a compatible prognostic marker in human solid tumors

Schmidt, Marcus; Hellwig, Birte; Hammad, Seddik; Othman, Amnah et al.

Part of Clinical Cancer Research, p. 2695-2703, 2012

• DOI for A comprehensive analysis of human gene expression profiles identifies stromal immunoglobulin kappa C as a compatible prognostic marker in human solid tumors

Distinct transcriptional control in major immunogenetic subsets of chronic lymphocytic leukemia exhibiting subset-biased global DNA methylation profiles

Kanduri, Meena; Marincevic, Millaray; Halldórsdóttir, Anna M; Mansouri, Larry et al.

Part of Epigenetics : official journal of the DNA Methylation Society, p. 1435-1442, 2012

• DOI for Distinct transcriptional control in major immunogenetic subsets of chronic lymphocytic leukemia exhibiting subset-biased global DNA methylation profiles

The transcriptome of the adenovirus infected cell

Zhao, Hongxing; Dahlö, Martin; Isaksson, Anders; Syvänen, Ann-Christine et al.

Part of Virology, p. 115-128, 2012

• DOI for The transcriptome of the adenovirus infected cell

Next generation RNA-sequencing in prognostic subsets of chronic lymphocytic leukemia

Mansouri, Larry; Gunnarsson, Rebeqa; Sutton, Lesley-Ann; Ameur, Adam et al.

Part of American Journal of Hematology, p. 737-740, 2012

• DOI for Next generation RNA-sequencing in prognostic subsets of chronic lymphocytic leukemia

Allele-specific copy number analysis of tumor samples with aneuploidy and tumor heterogeneity

Rasmussen, Markus; Sundström, Magnus; Kultima, Hanna Göransson; Botling, Johan et al.

Part of Genome Biology, 2011

• DOI for Allele-specific copy number analysis of tumor samples with aneuploidy and tumor heterogeneity
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Prostasomal DNA Characterization and Transfer Into Human Sperm

Ronquist, Göran K.; Larsson, Anders; Ronquist, Gunnar; Isaksson, Anders et al.

Part of Molecular Reproduction and Development, p. 467-476, 2011

• DOI for Prostasomal DNA Characterization and Transfer Into Human Sperm

Array-based genomic screening at diagnosis and during follow-up in chronic lymphocytic leukemia

Gunnarsson, Rebeqa; Mansouri, Larry; Isaksson, Anders; Göransson, Hanna et al.

Part of Haematologica, p. 1161-1169, 2011

• DOI for Array-based genomic screening at diagnosis and during follow-up in chronic lymphocytic leukemia

High-resolution genomic screening in mantle cell lymphoma: specific changes correlate with genomic complexity, the proliferation signature and survival

Halldórsdóttir, Anna M.; Sander, Birgitta; Göransson, Hanna; Isaksson, Anders et al.

Part of Genes, Chromosomes and Cancer, p. 113-121, 2011

• DOI for High-resolution genomic screening in mantle cell lymphoma: specific changes correlate with genomic complexity, the proliferation signature and survival

Gene Copy Number Aberrations Are Associated with Survival in Histologic Subgroups of Non-small Cell Lung Cancer

Micke, Patrick; Edlund, Karolina; Holmberg, Lars; Göransson Kultima, Hanna et al.

Part of Journal of Thoracic Oncology, p. 1833-1840, 2011

• DOI for Gene Copy Number Aberrations Are Associated with Survival in Histologic Subgroups of Non-small Cell Lung Cancer

Feather pecking behavior in laying hens: Hypothalamic gene expression in birds performing and receiving pecks

Brunberg, E.; Jensen, P.; Isaksson, Anders; Keeling, L.

Part of Poultry Science, p. 1145-1152, 2011

• DOI for Feather pecking behavior in laying hens: Hypothalamic gene expression in birds performing and receiving pecks

Differential genome-wide array-based methylation profiles in prognostic subsets of chronic lymphocytic leukemia

Kanduri, Meena; Cahill, Nicola; Göransson, Hanna; Enström, Camilla et al.

Part of Blood, p. 296-305, 2010

• DOI for Differential genome-wide array-based methylation profiles in prognostic subsets of chronic lymphocytic leukemia

Distinct gene expression profiles in subsets of chronic lymphocytic leukemia expressing stereotyped IGHV4-34 B cell receptors

Marincevic, Millaray; Mansouri, Mahmoud; Kanduri, Meena; Isaksson, Anders et al.

Part of Haematologica, p. 2072-2079, 2010

• DOI for Distinct gene expression profiles in subsets of chronic lymphocytic leukemia expressing stereotyped IGHV4-34 B cell receptors

High-density screening reveals a different spectrum of genomic aberrations in chronic lymphocytic leukemia patients with 'stereotyped' IGHV3-21 and IGHV4-34 B-cell receptors

Marincevic, Millaray; Cahill, Nicola; Isaksson, Anders; Mansouri, Mahmoud Reza et al.

Part of Haematologica, p. 1519-1525, 2010

• DOI for High-density screening reveals a different spectrum of genomic aberrations in chronic lymphocytic leukemia patients with 'stereotyped' IGHV3-21 and IGHV4-34 B-cell receptors

Characterization of the cytotoxic properties of the benzimidazole fungicides, benomyl and carbendazim, in human tumour cell lines and primary cultures of patient tumour cells

Laryea, Daniel; Gullbo, Joachim; Isaksson, Anders; Larsson, Rolf et al.

Part of Anti-Cancer Drugs, p. 33-42, 2010

• DOI for Characterization of the cytotoxic properties of the benzimidazole fungicides, benomyl and carbendazim, in human tumour cell lines and primary cultures of patient tumour cells

Improving Bayesian credibility intervals for classifier error rates using maximum entropy empirical priors

Gustafsson, Mats G.; Wallman, Mikael; Wickenberg-Bolin, Ulrika; Göransson, Hanna et al.

Part of Artificial Intelligence in Medicine, p. 93-104, 2010

• DOI for Improving Bayesian credibility intervals for classifier error rates using maximum entropy empirical priors

Characterization of the RNA content of chromatin

Mondal, Tanmoy; Rasmussen, Markus; Pandey, Gaurav Kumar; Isaksson, Anders et al.

Part of Genome Research, p. 899-907, 2010

• DOI for Characterization of the RNA content of chromatin

Large but not small copy-number alterations correlate to high-risk genomic aberrations and survival in chronic lymphocytic leukemia: a high-resolution genomic screening of newly diagnosed patients

Gunnarsson, R.; Isaksson, Anders; Mansouri, Mahmoud; Göransson, H. et al.

Part of Leukemia, p. 211-215, 2010

• DOI for Large but not small copy-number alterations correlate to high-risk genomic aberrations and survival in chronic lymphocytic leukemia: a high-resolution genomic screening of newly diagnosed patients

Stathmin as a Marker for Malignancy in Pheochromocytomas

Björklund, Peyman; Cupisti, Kenko; Fryknäs, Mårten; Isaksson, Anders et al.

Part of Experimental and clinical endocrinology & diabetes, p. 27-30, 2010

• DOI for Stathmin as a Marker for Malignancy in Pheochromocytomas

Characterization of the cytotoxic activity of the indoloquinoline alkaloid cryptolepine in human tumour cell lines and primary cultures of tumour cells from patients

Laryea, Daniel; Isaksson, Anders; Wright, Colin; Larsson, Rolf et al.

Part of Investigational new drugs, p. 402-411, 2009

• DOI for Characterization of the cytotoxic activity of the indoloquinoline alkaloid cryptolepine in human tumour cell lines and primary cultures of tumour cells from patients

Extensive expression of craniofacial related homeobox genes in canine mammary sarcomas

Wensman, Helena; Göransson, Hanna; Leuchowius, Karl-Johan; Strömberg, Sara et al.

Part of Breast Cancer Research and Treatment, p. 333-343, 2009

• DOI for Extensive expression of craniofacial related homeobox genes in canine mammary sarcomas

Quantification of normal cell fraction and copy number neutral LOH in clinical lung cancer samples using SNP array data

Göransson, Hanna; Edlund, Karolina; Rydåker, Maria; Rasmussen, Markus et al.

Part of PloS one, 2009

• DOI for Quantification of normal cell fraction and copy number neutral LOH in clinical lung cancer samples using SNP array data

Cross-validation and bootstrapping are unreliable in small sample classification

Isaksson, Anders; Wallman, M.; Göransson, Hanna; Gustafsson, Mats.G.

Part of Pattern Recognition Letters, p. 1960-1965, 2008

• DOI for Cross-validation and bootstrapping are unreliable in small sample classification

Gene expression signature-based chemcial genomics and activity pattern in a panel of tumour cell lines propose linalyl acetate as a protein kinase/NF-κB inhibitor

Hassan, Saadia; Lindhagen, Elin; Göransson, Hanna; Fryknäs, Mårten et al.

Part of Gene Therapy and Molecular Biology, p. 359-370, 2008

Segmentation-based detection of allelic imbalance and loss-of-heterozygosity in cancer cells using whole genome SNP arrays.

Staaf, Johan; Lindgren, David; Vallon-Christersson, Johan; Isaksson, Anders et al.

Part of Genome biology, 2008

• DOI for Segmentation-based detection of allelic imbalance and loss-of-heterozygosity in cancer cells using whole genome SNP arrays.

Screening for copy-number alterations and loss of heterozygosity in chronic lymphocytic leukemia-A comparative study of four differently designed, high resolution microarray platforms

Gunnarsson, Rebeqa; Staaf, Johan; Jansson, Mattias; Ottesen, Anne Marie et al.

Part of Genes, Chromosomes and Cancer, p. 697-711, 2008

• DOI for Screening for copy-number alterations and loss of heterozygosity in chronic lymphocytic leukemia-A comparative study of four differently designed, high resolution microarray platforms

Gene expression analysis identifies a genetic signature potentially associated with response to alpha-IFN in chronic phase CML patients

Hagberg, Anette; Olsson-Strömberg, Ulla; Wickenberg-Bolin, Ulrika; Göransson, Hanna et al.

Part of Leukemia Research, p. 931-938, 2007

• DOI for Gene expression analysis identifies a genetic signature potentially associated with response to alpha-IFN in chronic phase CML patients

Revealing cell cycle control by combining model-based detection of periodic expression with novel cis-regulatory descriptors

Andersson, Claes R.; Hvidsten, Torgeir R.; Isaksson, Anders; Gustafsson, Mats G. et al.

Part of BMC Systems Biology, p. 45, 2007

• DOI for Revealing cell cycle control by combining model-based detection of periodic expression with novel cis-regulatory descriptors

Allelic imbalance in gene expression as a guide to cis-acting regulatory single nucleotide polymorphisms in cancer cells

Milani, Lili; Gupta, Manu; Andersen, M.; Dhar, Sumeer et al.

Part of Nucleic Acids Research, 2007

• DOI for Allelic imbalance in gene expression as a guide to cis-acting regulatory single nucleotide polymorphisms in cancer cells

STAT1 signaling is associated with acquired crossresistance to doxorubicin and radiation in myeloma cell lines

Fryknäs, Mårten; Dhar, Sumeer; Öberg, Fredrik; Rickardson, Linda et al.

Part of International Journal of Cancer, p. 189-195, 2007

• DOI for STAT1 signaling is associated with acquired crossresistance to doxorubicin and radiation in myeloma cell lines

Pharmacological profiling of disulfiram using human tumor cell lines and human tumor cells from patients

Wickström, Malin; Danielsson, Katarina; Rickardson, Linda; Gullbo, Joachim et al.

Part of Biochemical Pharmacology, p. 25-33, 2007

• DOI for Pharmacological profiling of disulfiram using human tumor cell lines and human tumor cells from patients

In vitro drug sensitivity-gene expression correlations involve a tissue of origin dependency

Andersson, Claes R.; Fryknäs, Mårten; Rickardson, Linda; Larsson, Rolf et al.

Part of Journal of chemical information and modeling, p. 239-248, 2007

• DOI for In vitro drug sensitivity-gene expression correlations involve a tissue of origin dependency

Bayesian detection of periodic mRNA time profiles withouth use of training examples

Andersson, Claes R.; Isaksson, Anders; Gustafsson, Mats G.

Part of BMC Bioinformatics, p. 63, 2006

• DOI for Bayesian detection of periodic mRNA time profiles withouth use of training examples

Improved variance estimation of classification performance via reduction of bias caused by small sample size

Wickenberg Bolin, Ulrika; Göransson, Hanna; Fryknäs, Mårten; Gustafsson, Mats G et al.

Part of BMC Bioinformatics, p. 127, 2006

Characterization of an imatinib-sensitive subset of high-grade human glioma cultures

Hägerstrand, Daniel; Hesselager, Göran; Achterberg, Sefanja; Wickenberg Bolin, Ulrika et al.

Part of Oncogene, p. 4913-4922, 2006

• DOI for Characterization of an imatinib-sensitive subset of high-grade human glioma cultures

Screening of an annotated compound library for drug activity in a resistant myeloma cell line

Rickardson, Linda; Fryknäs, Mårten; Haglund, Caroline; Lövborg, Henrik et al.

Part of Cancer Chemotherapy and Pharmacology, p. 749-758, 2006

• DOI for Screening of an annotated compound library for drug activity in a resistant myeloma cell line

Constitutional downregulation of SEMA5A expression in autism

Melin, Malin; Carlsson, B.; Anckarsäter, H.; Råstam, M. et al.

Part of Neuropsychobiology, p. 64-69, 2006

• DOI for Constitutional downregulation of SEMA5A expression in autism

Phenotype-based screening of mechanistically annotated compounds in combination with gene expression and pathway analysis identifies candidate drug targets in a human squamous carcinoma cell model

Fryknäs, Mårten; Rickardson, Linda; Wickström, Malin; Dhar, Sumeer et al.

Part of Journal of Biomolecular Screening, p. 457-468, 2006

• DOI for Phenotype-based screening of mechanistically annotated compounds in combination with gene expression and pathway analysis identifies candidate drug targets in a human squamous carcinoma cell model

Molecular markers for discrimination of benign and malignant follicular thyroid tumors

Fryknäs, Mårten; Wickenberg Bolin, Ulrika; Göransson, Hanna; Gustafsson, Mats G et al.

Part of Tumor Biology, p. 211-220, 2006

• DOI for Molecular markers for discrimination of benign and malignant follicular thyroid tumors

External cross-validation for unbiased evaluation of protein family detectors: application to allergens

Soeria-Atmadja, Daniel; Wallman, Mikael; Björklund, Åsa K.; Isaksson, Anders et al.

Part of Proteins, p. 918-925, 2005

• DOI for External cross-validation for unbiased evaluation of protein family detectors: application to allergens

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