Anders Isaksson

Molecular classification of microsatellite-instable colorectal cancers reveals distinct predictors of immunotherapy response

Lin, C.; Luo, T.; Wu, M.; Li, F. et al.

Ingår i ESMO Gastrointestinal Oncology, 2025

• DOI för Molecular classification of microsatellite-instable colorectal cancers reveals distinct predictors of immunotherapy response
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Tissue-resident microbiota impacts colorectal cancer progression and prognosis

Shi, Zhun; Ren, Huahui; Lin, Cong; Li, Fuqiang et al.

Ingår i Nature Communications, 2025

• DOI för Tissue-resident microbiota impacts colorectal cancer progression and prognosis
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Plasma-Derived Extracellular Vesicle-Propagated microRNA From Aortic Stenosis Patients Render Pro-Calcifying Effects on Valve Interstitial Cells

Khandagale, Avinash B.; Corcoran, Pádraic; Dan, Yuzhen; Isaksson, Anders et al.

Ingår i JACC: Basic to Translational Science, 2025

• DOI för Plasma-Derived Extracellular Vesicle-Propagated microRNA From Aortic Stenosis Patients Render Pro-Calcifying Effects on Valve Interstitial Cells
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Distribution and prognostic impacts of enterobacteriaceae-derived virulence factor genes in colorectal cancer

Shi, Zhun; Zhu, Ting; Ren, Huahui; Li, Fuqiang et al.

Ingår i Gut, 2025

• DOI för Distribution and prognostic impacts of enterobacteriaceae-derived virulence factor genes in colorectal cancer

MircoRNA in Extracellular Vesicles from Patients with Pulmonary Arterial Hypertension Alters Endothelial Angiogenic Response

Khandagale, Avinash; Corcoran, Pádraic; Nikpour, Maryam; Isaksson, Anders et al.

Ingår i International Journal of Molecular Sciences, 2022

• DOI för MircoRNA in Extracellular Vesicles from Patients with Pulmonary Arterial Hypertension Alters Endothelial Angiogenic Response
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Molecular classification of microsatellite-instable colorectal cancers reveals distinct predictors of immunotherapy response

Lin, C.; Luo, T.; Wu, M.; Li, F. et al.

Ingår i ESMO Gastrointestinal Oncology, 2025

• DOI för Molecular classification of microsatellite-instable colorectal cancers reveals distinct predictors of immunotherapy response
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Tissue-resident microbiota impacts colorectal cancer progression and prognosis

Shi, Zhun; Ren, Huahui; Lin, Cong; Li, Fuqiang et al.

Ingår i Nature Communications, 2025

• DOI för Tissue-resident microbiota impacts colorectal cancer progression and prognosis
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Plasma-Derived Extracellular Vesicle-Propagated microRNA From Aortic Stenosis Patients Render Pro-Calcifying Effects on Valve Interstitial Cells

Khandagale, Avinash B.; Corcoran, Pádraic; Dan, Yuzhen; Isaksson, Anders et al.

Ingår i JACC: Basic to Translational Science, 2025

• DOI för Plasma-Derived Extracellular Vesicle-Propagated microRNA From Aortic Stenosis Patients Render Pro-Calcifying Effects on Valve Interstitial Cells
• Ladda ner fulltext (pdf) av Plasma-Derived Extracellular Vesicle-Propagated microRNA From Aortic Stenosis Patients Render Pro-Calcifying Effects on Valve Interstitial Cells

Distribution and prognostic impacts of enterobacteriaceae-derived virulence factor genes in colorectal cancer

Shi, Zhun; Zhu, Ting; Ren, Huahui; Li, Fuqiang et al.

Ingår i Gut, 2025

• DOI för Distribution and prognostic impacts of enterobacteriaceae-derived virulence factor genes in colorectal cancer

MircoRNA in Extracellular Vesicles from Patients with Pulmonary Arterial Hypertension Alters Endothelial Angiogenic Response

Khandagale, Avinash; Corcoran, Pádraic; Nikpour, Maryam; Isaksson, Anders et al.

Ingår i International Journal of Molecular Sciences, 2022

• DOI för MircoRNA in Extracellular Vesicles from Patients with Pulmonary Arterial Hypertension Alters Endothelial Angiogenic Response
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FOXP3+ T cells in uterine sarcomas are associated with favorable prognosis, low extracellular matrix expression and reduced YAP activation

Gultekin, Okan; Gonzalez-Molina, Jordi; Hardell, Elin; Moyano-Galceran, Lidia et al.

Ingår i npj Precision Oncology, 2021

• DOI för FOXP3+ T cells in uterine sarcomas are associated with favorable prognosis, low extracellular matrix expression and reduced YAP activation
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Genomic and transcriptomic features of dermatofibrosarcoma protuberans: Unusual chromosomal origin of the COL1A1-PDGFB fusion gene and synergistic effects of amplified regions in tumor development

Koster, Jan; Arbajian, Elsa; Viklund, Björn; Isaksson, Anders et al.

Ingår i Cancer Genetics, s. 34-41, 2020

• DOI för Genomic and transcriptomic features of dermatofibrosarcoma protuberans: Unusual chromosomal origin of the COL1A1-PDGFB fusion gene and synergistic effects of amplified regions in tumor development
• Ladda ner fulltext (pdf) av Genomic and transcriptomic features of dermatofibrosarcoma protuberans: Unusual chromosomal origin of the COL1A1-PDGFB fusion gene and synergistic effects of amplified regions in tumor development

Inter- and intra-breed genome-wide copy number diversity in a large cohort of European equine breeds

Sole, Marina; Ablondi, Michela; Binzer, Amrei; Velie, Brandon D. et al.

Ingår i BMC Genomics, 2019

• DOI för Inter- and intra-breed genome-wide copy number diversity in a large cohort of European equine breeds
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Gains of Chromosome 1p and 15q are Associated with Poor Survival After Cytoreductive Surgery and HIPEC for Treating Colorectal Peritoneal Metastases

Enblad, Malin; Graf, Wilhelm; Terman, Alexei; Pucholt, Pascal et al.

Ingår i Annals of Surgical Oncology, s. 4835-4842, 2019

• DOI för Gains of Chromosome 1p and 15q are Associated with Poor Survival After Cytoreductive Surgery and HIPEC for Treating Colorectal Peritoneal Metastases
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Integrated Molecular Analysis of Undifferentiated Uterine Sarcomas Reveals Clinically Relevant Molecular Subtypes

Binzer-Panchal, Amrei; Hardell, Elin; Viklund, Björn; Ghaderi, Mehran et al.

Ingår i Clinical Cancer Research, s. 2155-2165, 2019

• DOI för Integrated Molecular Analysis of Undifferentiated Uterine Sarcomas Reveals Clinically Relevant Molecular Subtypes

Four evolutionary trajectories underlie genetic intratumoral variation in childhood cancer

Karlsson, Jenny; Valind, Anders; Mengelbier, Linda Holmquist; Bredin, Sofia et al.

Ingår i Nature Genetics, s. 944-950, 2018

• DOI för Four evolutionary trajectories underlie genetic intratumoral variation in childhood cancer

Different patterns of clonal evolution among different sarcoma subtypes followed for up to 25 years

Hofvander, Jakob; Viklund, Björn; Isaksson, Anders; Brosjo, Otte et al.

Ingår i Nature Communications, 2018

• DOI för Different patterns of clonal evolution among different sarcoma subtypes followed for up to 25 years
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Mutation, methylation, and gene expression profiles in dup(1q)-positive pediatric B-cell precursor acute lymphoblastic leukemia

Gunnarsson, Rebeqa; DiLorenzo, Sebastian; Lundin-Ström, Kristina B.; Olsson, Linda et al.

Ingår i Leukemia, s. 2117-2125, 2018

• DOI för Mutation, methylation, and gene expression profiles in dup(1q)-positive pediatric B-cell precursor acute lymphoblastic leukemia
• Ladda ner fulltext (pdf) av Mutation, methylation, and gene expression profiles in dup(1q)-positive pediatric B-cell precursor acute lymphoblastic leukemia

Primary glioblastoma cells for precision medicine: a quantitative portrait of genomic (in)stability during the first 30 passages

Baskaran, Sathishkumar; Mayrhofer, Markus; Göransson Kultima, Hanna; Bergström, Tobias et al.

Ingår i Neuro-Oncology, s. 1080-1091, 2018

• DOI för Primary glioblastoma cells for precision medicine: a quantitative portrait of genomic (in)stability during the first 30 passages
• Ladda ner fulltext (pdf) av Primary glioblastoma cells for precision medicine: a quantitative portrait of genomic (in)stability during the first 30 passages

Increased Calcium Influx through L-type Calcium Channels in Human and Mouse Neural Progenitors Lacking Fragile X Mental Retardation Protein

Danesi, Claudia; Achuta, Venkat Swaroop; Corcoran, Pádraic; Peteri, Ulla-Kaisa et al.

Ingår i Stem Cell Reports, s. 1449-1461, 2018

• DOI för Increased Calcium Influx through L-type Calcium Channels in Human and Mouse Neural Progenitors Lacking Fragile X Mental Retardation Protein
• Ladda ner fulltext (pdf) av Increased Calcium Influx through L-type Calcium Channels in Human and Mouse Neural Progenitors Lacking Fragile X Mental Retardation Protein

Scattered genomic amplification in dedifferentiated liposarcoma

Mandahl, Nils; Magnusson, Linda; Nilsson, Jenny; Viklund, Björn et al.

Ingår i Molecular Cytogenetics, 2017

• DOI för Scattered genomic amplification in dedifferentiated liposarcoma
• Ladda ner fulltext (pdf) av Scattered genomic amplification in dedifferentiated liposarcoma

Somatic Ephrin Receptor Mutations Are Associated with Metastasis in Primary Colorectal Cancer

Mathot, Lucy; Kundu, Snehangshu; Ljungström, Viktor; Svedlund, Jessica et al.

Ingår i Cancer Research, s. 1730-1740, 2017

• DOI för Somatic Ephrin Receptor Mutations Are Associated with Metastasis in Primary Colorectal Cancer

DNA METHYLATION PROFILING IN CHRONIC LYMPHOCYTIC LEUKEMIA PATIENTS CARRYING STEREOTYPED B-CELL RECEPTORS: A DIFFERENT CELLULAR ORIGIN FOR SUBSET #2?

Bhoi, Sujata; Mansouri, Larry; Castellano, G.; Sutton, Lesley Ann et al.

Ingår i Haematologica, s. 68-68, 2017

Gene expression profiles in preterm infants on continuous long-term oxygen therapy suggest reduced oxidative stress-dependent signaling during hypoxia

Kalikstad, Betty; Göransson Kultima, Hanna; Andersstuen, Terese Kristoffersen; Klungland, Arne et al.

Ingår i Molecular Medicine Reports, s. 1513-1526, 2017

• DOI för Gene expression profiles in preterm infants on continuous long-term oxygen therapy suggest reduced oxidative stress-dependent signaling during hypoxia
• Ladda ner fulltext (pdf) av Gene expression profiles in preterm infants on continuous long-term oxygen therapy suggest reduced oxidative stress-dependent signaling during hypoxia

Rawcopy: Improved copy number analysis with Affymetrix arrays

Mayrhofer, Markus; Viklund, Björn; Isaksson, Anders

Ingår i Scientific Reports, 2016

• DOI för Rawcopy: Improved copy number analysis with Affymetrix arrays
• Ladda ner fulltext (pdf) av Rawcopy: Improved copy number analysis with Affymetrix arrays

Intratumoral genome diversity parallels progression and predicts outcome in pediatric cancer

Mengelbier, Linda Holmquist; Karlsson, Jenny; Lindgren, David; Valind, Anders et al.

Ingår i Nature Communications, 2015

• DOI för Intratumoral genome diversity parallels progression and predicts outcome in pediatric cancer

Microsatellite instability and mutations in BRAF and KRAS are significant predictors of disseminated disease in colon cancer

Birgisson, Helgi; Edlund, Karolina; Wallin, Ulrik; Påhlman, Lars et al.

Ingår i BMC Cancer, 2015

• DOI för Microsatellite instability and mutations in BRAF and KRAS are significant predictors of disseminated disease in colon cancer
• Ladda ner fulltext (pdf) av Microsatellite instability and mutations in BRAF and KRAS are significant predictors of disseminated disease in colon cancer

Spatiotemporal Heterogeneity Characterizes the Genetic Landscape of Pheochromocytoma and Defines Early Events in Tumorigenesis.

Crona, Joakim; Backman, Samuel; Maharjan, Rajani; Mayrhofer, Markus et al.

Ingår i Clinical Cancer Research, s. 4451-4460, 2015

• DOI för Spatiotemporal Heterogeneity Characterizes the Genetic Landscape of Pheochromocytoma and Defines Early Events in Tumorigenesis.

Genomic Complexity Profiling Reveals That HORMAD1 Overexpression Contributes to Homologous Recombination Deficiency in Triple-Negative Breast Cancers

Watkins, Johnathan; Weekes, Daniel; Shah, Vandna; Gazinska, Patrycja et al.

Ingår i Cancer Discovery, s. 488-505, 2015

• DOI för Genomic Complexity Profiling Reveals That HORMAD1 Overexpression Contributes to Homologous Recombination Deficiency in Triple-Negative Breast Cancers

1p36 deletion is a marker for tumour dissemination in microsatellite stable stage II-III colon cancer

Mayrhofer, Markus; Kultima, Hanna Göransson; Birgisson, Helgi; Sundström, Magnus et al.

Ingår i BMC Cancer, s. 872, 2014

• DOI för 1p36 deletion is a marker for tumour dissemination in microsatellite stable stage II-III colon cancer
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450K-array analysis of chronic lymphocytic leukemia cells reveals global DNA methylation to be relatively stable over time and similar in resting and proliferative compartments.

Cahill, Nicola; Bergh, A-C; Kanduri, M; Göransson-Kultima, H et al.

Ingår i Leukemia, s. 150-158, 2013

• DOI för 450K-array analysis of chronic lymphocytic leukemia cells reveals global DNA methylation to be relatively stable over time and similar in resting and proliferative compartments.

Synergistic interactions between camptothecin and EGFR or RAC1 inhibitors and between imatinib and Notch signaling or RAC1 inhibitors in glioblastoma cell lines

Sooman, Linda; Ekman, Simon; Andersson, Claes; Kultima, Hanna Göransson et al.

Ingår i Cancer Chemotherapy and Pharmacology, s. 329-340, 2013

• DOI för Synergistic interactions between camptothecin and EGFR or RAC1 inhibitors and between imatinib and Notch signaling or RAC1 inhibitors in glioblastoma cell lines

Behavioural and Brain Gene Expression Profiling in Pigs during Tail Biting Outbreaks - Evidence of a Tail Biting Resistant Phenotype

Brunberg, Emma; Jensen, Per; Isaksson, Anders; Keeling, Linda J.

Ingår i PLOS ONE, 2013

• DOI för Behavioural and Brain Gene Expression Profiling in Pigs during Tail Biting Outbreaks - Evidence of a Tail Biting Resistant Phenotype
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Patchwork: allele-specific copy number analysis of whole-genome sequenced tumor tissue

Mayrhofer, Markus; DiLorenzo, Sebastian; Isaksson, Anders

Ingår i Genome Biology, 2013

• DOI för Patchwork: allele-specific copy number analysis of whole-genome sequenced tumor tissue
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Brain gene expression differences are associated with abnormal tail biting behavior in pigs

Brunberg, E.; Jensen, P.; Isaksson, Anders; Keeling, L. J.

Ingår i Genes, Brain and Behavior, s. 275-281, 2013

• DOI för Brain gene expression differences are associated with abnormal tail biting behavior in pigs

Loss-of-heterozygosity on chromosome 19q in early-stage serous ovarian cancer is associated with recurrent disease

Skírnisdóttir, Ingiridur; Mayrhofer, Markus; Rydåker, Maria; Åkerud, Helena et al.

Ingår i BMC Cancer, s. 407, 2012

• DOI för Loss-of-heterozygosity on chromosome 19q in early-stage serous ovarian cancer is associated with recurrent disease
• Ladda ner fulltext (pdf) av Loss-of-heterozygosity on chromosome 19q in early-stage serous ovarian cancer is associated with recurrent disease

Mantle cell lymphoma displays a homogenous methylation profile: A comparative analysis with chronic lymphocytic leukemia

Halldorsdottir, Anna Margret; Kanduri, Meena; Marincevic, Millaray; Mansouri, Larry et al.

Ingår i American Journal of Hematology, s. 361-367, 2012

• DOI för Mantle cell lymphoma displays a homogenous methylation profile: A comparative analysis with chronic lymphocytic leukemia

Synergistic Effects of PI3K or P38 MAPK Inhibition in Combination With Vandetanib Treatment in Glioblastoma Cells

Sooman, Linda; Ekman, Simon; Andersson, Claes; Johansson, Fredrik et al.

Ingår i European Journal of Cancer, 2012

• DOI för Synergistic Effects of PI3K or P38 MAPK Inhibition in Combination With Vandetanib Treatment in Glioblastoma Cells

A comprehensive analysis of human gene expression profiles identifies stromal immunoglobulin kappa C as a compatible prognostic marker in human solid tumors

Schmidt, Marcus; Hellwig, Birte; Hammad, Seddik; Othman, Amnah et al.

Ingår i Clinical Cancer Research, s. 2695-2703, 2012

• DOI för A comprehensive analysis of human gene expression profiles identifies stromal immunoglobulin kappa C as a compatible prognostic marker in human solid tumors

Distinct transcriptional control in major immunogenetic subsets of chronic lymphocytic leukemia exhibiting subset-biased global DNA methylation profiles

Kanduri, Meena; Marincevic, Millaray; Halldórsdóttir, Anna M; Mansouri, Larry et al.

Ingår i Epigenetics : official journal of the DNA Methylation Society, s. 1435-1442, 2012

• DOI för Distinct transcriptional control in major immunogenetic subsets of chronic lymphocytic leukemia exhibiting subset-biased global DNA methylation profiles

The transcriptome of the adenovirus infected cell

Zhao, Hongxing; Dahlö, Martin; Isaksson, Anders; Syvänen, Ann-Christine et al.

Ingår i Virology, s. 115-128, 2012

• DOI för The transcriptome of the adenovirus infected cell

Next generation RNA-sequencing in prognostic subsets of chronic lymphocytic leukemia

Mansouri, Larry; Gunnarsson, Rebeqa; Sutton, Lesley-Ann; Ameur, Adam et al.

Ingår i American Journal of Hematology, s. 737-740, 2012

• DOI för Next generation RNA-sequencing in prognostic subsets of chronic lymphocytic leukemia

Allele-specific copy number analysis of tumor samples with aneuploidy and tumor heterogeneity

Rasmussen, Markus; Sundström, Magnus; Kultima, Hanna Göransson; Botling, Johan et al.

Ingår i Genome Biology, 2011

• DOI för Allele-specific copy number analysis of tumor samples with aneuploidy and tumor heterogeneity
• Ladda ner fulltext (pdf) av Allele-specific copy number analysis of tumor samples with aneuploidy and tumor heterogeneity

Prostasomal DNA Characterization and Transfer Into Human Sperm

Ronquist, Göran K.; Larsson, Anders; Ronquist, Gunnar; Isaksson, Anders et al.

Ingår i Molecular Reproduction and Development, s. 467-476, 2011

• DOI för Prostasomal DNA Characterization and Transfer Into Human Sperm

Array-based genomic screening at diagnosis and during follow-up in chronic lymphocytic leukemia

Gunnarsson, Rebeqa; Mansouri, Larry; Isaksson, Anders; Göransson, Hanna et al.

Ingår i Haematologica, s. 1161-1169, 2011

• DOI för Array-based genomic screening at diagnosis and during follow-up in chronic lymphocytic leukemia

High-resolution genomic screening in mantle cell lymphoma: specific changes correlate with genomic complexity, the proliferation signature and survival

Halldórsdóttir, Anna M.; Sander, Birgitta; Göransson, Hanna; Isaksson, Anders et al.

Ingår i Genes, Chromosomes and Cancer, s. 113-121, 2011

• DOI för High-resolution genomic screening in mantle cell lymphoma: specific changes correlate with genomic complexity, the proliferation signature and survival

Gene Copy Number Aberrations Are Associated with Survival in Histologic Subgroups of Non-small Cell Lung Cancer

Micke, Patrick; Edlund, Karolina; Holmberg, Lars; Göransson Kultima, Hanna et al.

Ingår i Journal of Thoracic Oncology, s. 1833-1840, 2011

• DOI för Gene Copy Number Aberrations Are Associated with Survival in Histologic Subgroups of Non-small Cell Lung Cancer

Feather pecking behavior in laying hens: Hypothalamic gene expression in birds performing and receiving pecks

Brunberg, E.; Jensen, P.; Isaksson, Anders; Keeling, L.

Ingår i Poultry Science, s. 1145-1152, 2011

• DOI för Feather pecking behavior in laying hens: Hypothalamic gene expression in birds performing and receiving pecks

Differential genome-wide array-based methylation profiles in prognostic subsets of chronic lymphocytic leukemia

Kanduri, Meena; Cahill, Nicola; Göransson, Hanna; Enström, Camilla et al.

Ingår i Blood, s. 296-305, 2010

• DOI för Differential genome-wide array-based methylation profiles in prognostic subsets of chronic lymphocytic leukemia

Distinct gene expression profiles in subsets of chronic lymphocytic leukemia expressing stereotyped IGHV4-34 B cell receptors

Marincevic, Millaray; Mansouri, Mahmoud; Kanduri, Meena; Isaksson, Anders et al.

Ingår i Haematologica, s. 2072-2079, 2010

• DOI för Distinct gene expression profiles in subsets of chronic lymphocytic leukemia expressing stereotyped IGHV4-34 B cell receptors

High-density screening reveals a different spectrum of genomic aberrations in chronic lymphocytic leukemia patients with 'stereotyped' IGHV3-21 and IGHV4-34 B-cell receptors

Marincevic, Millaray; Cahill, Nicola; Isaksson, Anders; Mansouri, Mahmoud Reza et al.

Ingår i Haematologica, s. 1519-1525, 2010

• DOI för High-density screening reveals a different spectrum of genomic aberrations in chronic lymphocytic leukemia patients with 'stereotyped' IGHV3-21 and IGHV4-34 B-cell receptors

Characterization of the cytotoxic properties of the benzimidazole fungicides, benomyl and carbendazim, in human tumour cell lines and primary cultures of patient tumour cells

Laryea, Daniel; Gullbo, Joachim; Isaksson, Anders; Larsson, Rolf et al.

Ingår i Anti-Cancer Drugs, s. 33-42, 2010

• DOI för Characterization of the cytotoxic properties of the benzimidazole fungicides, benomyl and carbendazim, in human tumour cell lines and primary cultures of patient tumour cells

Improving Bayesian credibility intervals for classifier error rates using maximum entropy empirical priors

Gustafsson, Mats G.; Wallman, Mikael; Wickenberg-Bolin, Ulrika; Göransson, Hanna et al.

Ingår i Artificial Intelligence in Medicine, s. 93-104, 2010

• DOI för Improving Bayesian credibility intervals for classifier error rates using maximum entropy empirical priors

Characterization of the RNA content of chromatin

Mondal, Tanmoy; Rasmussen, Markus; Pandey, Gaurav Kumar; Isaksson, Anders et al.

Ingår i Genome Research, s. 899-907, 2010

• DOI för Characterization of the RNA content of chromatin

Large but not small copy-number alterations correlate to high-risk genomic aberrations and survival in chronic lymphocytic leukemia: a high-resolution genomic screening of newly diagnosed patients

Gunnarsson, R.; Isaksson, Anders; Mansouri, Mahmoud; Göransson, H. et al.

Ingår i Leukemia, s. 211-215, 2010

• DOI för Large but not small copy-number alterations correlate to high-risk genomic aberrations and survival in chronic lymphocytic leukemia: a high-resolution genomic screening of newly diagnosed patients

Stathmin as a Marker for Malignancy in Pheochromocytomas

Björklund, Peyman; Cupisti, Kenko; Fryknäs, Mårten; Isaksson, Anders et al.

Ingår i Experimental and clinical endocrinology & diabetes, s. 27-30, 2010

• DOI för Stathmin as a Marker for Malignancy in Pheochromocytomas

Characterization of the cytotoxic activity of the indoloquinoline alkaloid cryptolepine in human tumour cell lines and primary cultures of tumour cells from patients

Laryea, Daniel; Isaksson, Anders; Wright, Colin; Larsson, Rolf et al.

Ingår i Investigational new drugs, s. 402-411, 2009

• DOI för Characterization of the cytotoxic activity of the indoloquinoline alkaloid cryptolepine in human tumour cell lines and primary cultures of tumour cells from patients

Extensive expression of craniofacial related homeobox genes in canine mammary sarcomas

Wensman, Helena; Göransson, Hanna; Leuchowius, Karl-Johan; Strömberg, Sara et al.

Ingår i Breast Cancer Research and Treatment, s. 333-343, 2009

• DOI för Extensive expression of craniofacial related homeobox genes in canine mammary sarcomas

Quantification of normal cell fraction and copy number neutral LOH in clinical lung cancer samples using SNP array data

Göransson, Hanna; Edlund, Karolina; Rydåker, Maria; Rasmussen, Markus et al.

Ingår i PloS one, 2009

• DOI för Quantification of normal cell fraction and copy number neutral LOH in clinical lung cancer samples using SNP array data

Cross-validation and bootstrapping are unreliable in small sample classification

Isaksson, Anders; Wallman, M.; Göransson, Hanna; Gustafsson, Mats.G.

Ingår i Pattern Recognition Letters, s. 1960-1965, 2008

• DOI för Cross-validation and bootstrapping are unreliable in small sample classification

Gene expression signature-based chemcial genomics and activity pattern in a panel of tumour cell lines propose linalyl acetate as a protein kinase/NF-κB inhibitor

Hassan, Saadia; Lindhagen, Elin; Göransson, Hanna; Fryknäs, Mårten et al.

Ingår i Gene Therapy and Molecular Biology, s. 359-370, 2008

Segmentation-based detection of allelic imbalance and loss-of-heterozygosity in cancer cells using whole genome SNP arrays.

Staaf, Johan; Lindgren, David; Vallon-Christersson, Johan; Isaksson, Anders et al.

Ingår i Genome biology, 2008

• DOI för Segmentation-based detection of allelic imbalance and loss-of-heterozygosity in cancer cells using whole genome SNP arrays.

Screening for copy-number alterations and loss of heterozygosity in chronic lymphocytic leukemia-A comparative study of four differently designed, high resolution microarray platforms

Gunnarsson, Rebeqa; Staaf, Johan; Jansson, Mattias; Ottesen, Anne Marie et al.

Ingår i Genes, Chromosomes and Cancer, s. 697-711, 2008

• DOI för Screening for copy-number alterations and loss of heterozygosity in chronic lymphocytic leukemia-A comparative study of four differently designed, high resolution microarray platforms

Gene expression analysis identifies a genetic signature potentially associated with response to alpha-IFN in chronic phase CML patients

Hagberg, Anette; Olsson-Strömberg, Ulla; Wickenberg-Bolin, Ulrika; Göransson, Hanna et al.

Ingår i Leukemia Research, s. 931-938, 2007

• DOI för Gene expression analysis identifies a genetic signature potentially associated with response to alpha-IFN in chronic phase CML patients

Revealing cell cycle control by combining model-based detection of periodic expression with novel cis-regulatory descriptors

Andersson, Claes R.; Hvidsten, Torgeir R.; Isaksson, Anders; Gustafsson, Mats G. et al.

Ingår i BMC Systems Biology, s. 45, 2007

• DOI för Revealing cell cycle control by combining model-based detection of periodic expression with novel cis-regulatory descriptors

Allelic imbalance in gene expression as a guide to cis-acting regulatory single nucleotide polymorphisms in cancer cells

Milani, Lili; Gupta, Manu; Andersen, M.; Dhar, Sumeer et al.

Ingår i Nucleic Acids Research, 2007

• DOI för Allelic imbalance in gene expression as a guide to cis-acting regulatory single nucleotide polymorphisms in cancer cells

STAT1 signaling is associated with acquired crossresistance to doxorubicin and radiation in myeloma cell lines

Fryknäs, Mårten; Dhar, Sumeer; Öberg, Fredrik; Rickardson, Linda et al.

Ingår i International Journal of Cancer, s. 189-195, 2007

• DOI för STAT1 signaling is associated with acquired crossresistance to doxorubicin and radiation in myeloma cell lines

Pharmacological profiling of disulfiram using human tumor cell lines and human tumor cells from patients

Wickström, Malin; Danielsson, Katarina; Rickardson, Linda; Gullbo, Joachim et al.

Ingår i Biochemical Pharmacology, s. 25-33, 2007

• DOI för Pharmacological profiling of disulfiram using human tumor cell lines and human tumor cells from patients

In vitro drug sensitivity-gene expression correlations involve a tissue of origin dependency

Andersson, Claes R.; Fryknäs, Mårten; Rickardson, Linda; Larsson, Rolf et al.

Ingår i Journal of chemical information and modeling, s. 239-248, 2007

• DOI för In vitro drug sensitivity-gene expression correlations involve a tissue of origin dependency

Bayesian detection of periodic mRNA time profiles withouth use of training examples

Andersson, Claes R.; Isaksson, Anders; Gustafsson, Mats G.

Ingår i BMC Bioinformatics, s. 63, 2006

• DOI för Bayesian detection of periodic mRNA time profiles withouth use of training examples

Improved variance estimation of classification performance via reduction of bias caused by small sample size

Wickenberg Bolin, Ulrika; Göransson, Hanna; Fryknäs, Mårten; Gustafsson, Mats G et al.

Ingår i BMC Bioinformatics, s. 127, 2006

Characterization of an imatinib-sensitive subset of high-grade human glioma cultures

Hägerstrand, Daniel; Hesselager, Göran; Achterberg, Sefanja; Wickenberg Bolin, Ulrika et al.

Ingår i Oncogene, s. 4913-4922, 2006

• DOI för Characterization of an imatinib-sensitive subset of high-grade human glioma cultures

Screening of an annotated compound library for drug activity in a resistant myeloma cell line

Rickardson, Linda; Fryknäs, Mårten; Haglund, Caroline; Lövborg, Henrik et al.

Ingår i Cancer Chemotherapy and Pharmacology, s. 749-758, 2006

• DOI för Screening of an annotated compound library for drug activity in a resistant myeloma cell line

Constitutional downregulation of SEMA5A expression in autism

Melin, Malin; Carlsson, B.; Anckarsäter, H.; Råstam, M. et al.

Ingår i Neuropsychobiology, s. 64-69, 2006

• DOI för Constitutional downregulation of SEMA5A expression in autism

Phenotype-based screening of mechanistically annotated compounds in combination with gene expression and pathway analysis identifies candidate drug targets in a human squamous carcinoma cell model

Fryknäs, Mårten; Rickardson, Linda; Wickström, Malin; Dhar, Sumeer et al.

Ingår i Journal of Biomolecular Screening, s. 457-468, 2006

• DOI för Phenotype-based screening of mechanistically annotated compounds in combination with gene expression and pathway analysis identifies candidate drug targets in a human squamous carcinoma cell model

Molecular markers for discrimination of benign and malignant follicular thyroid tumors

Fryknäs, Mårten; Wickenberg Bolin, Ulrika; Göransson, Hanna; Gustafsson, Mats G et al.

Ingår i Tumor Biology, s. 211-220, 2006

• DOI för Molecular markers for discrimination of benign and malignant follicular thyroid tumors

External cross-validation for unbiased evaluation of protein family detectors: application to allergens

Soeria-Atmadja, Daniel; Wallman, Mikael; Björklund, Åsa K.; Isaksson, Anders et al.

Ingår i Proteins, s. 918-925, 2005

• DOI för External cross-validation for unbiased evaluation of protein family detectors: application to allergens

Identification of molecular mechanisms for cellular drug resistance by combining drug activity and gene expression profiles

Rickardson, Linda; Fryknäs, Mårten; Dhar, Sumeer; Lövborg, Henrik et al.

Ingår i British Journal of Cancer, s. 483-492, 2005

Prognostic importance of genetic alterations in colorectal peritoneal metastases

Enblad, Malin; Graf, Wilhelm; Terman, Alexei; Pucholt, Pascal et al.