Gerhart Wagner

The RNA-binding protein ProQ promotes antibiotic persistence in Salmonella

Rizvanovic, Alisa; Michaux, Charlotte; Panza, Margherita; Iloglu, Zeynep et al.

Part of Molecular and Cellular Biology, 2022

• DOI for The RNA-binding protein ProQ promotes antibiotic persistence in Salmonella
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A nascent polypeptide sequence modulates DnaA translation elongation in response to nutrient availability

Felletti, Michele; Romilly, Cedric; Wagner, Gerhart E. H.; Jonas, Kristina

Part of eLIFE, 2021

• DOI for A nascent polypeptide sequence modulates DnaA translation elongation in response to nutrient availability
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An RNA pseudoknot is essential for standby-mediated translation of the tisB toxin mRNA in Escherichia coli

Romilly, Cedric; Lippegaus, Anne; Wagner, Gerhart E. H.

Part of Nucleic Acids Research, p. 12336-12347, 2020

• DOI for An RNA pseudoknot is essential for standby-mediated translation of the tisB toxin mRNA in Escherichia coli
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Small RNAs OmrA and OmrB promote class III flagellar gene expression by inhibiting the synthesis of anti-Sigma factor FlgM

Romilly, Cedric; Hoekzema, Mirthe; Holmqvist, Erik; Wagner, Gerhart E. H.

Part of RNA Biology, p. 872-880, 2020

• DOI for Small RNAs OmrA and OmrB promote class III flagellar gene expression by inhibiting the synthesis of anti-Sigma factor FlgM
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The Length of a DNA T-Tract Modulates Expression of a Virulence-Regulating sRNA

Wagner, E. Gerhart H.; Holmqvist, Erik

Part of Molecular Cell, p. 175-177, 2020

• DOI for The Length of a DNA T-Tract Modulates Expression of a Virulence-Regulating sRNA

The RNA-binding protein ProQ promotes antibiotic persistence in Salmonella

Rizvanovic, Alisa; Michaux, Charlotte; Panza, Margherita; Iloglu, Zeynep et al.

Part of Molecular and Cellular Biology, 2022

• DOI for The RNA-binding protein ProQ promotes antibiotic persistence in Salmonella
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A nascent polypeptide sequence modulates DnaA translation elongation in response to nutrient availability

Felletti, Michele; Romilly, Cedric; Wagner, Gerhart E. H.; Jonas, Kristina

Part of eLIFE, 2021

• DOI for A nascent polypeptide sequence modulates DnaA translation elongation in response to nutrient availability
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An RNA pseudoknot is essential for standby-mediated translation of the tisB toxin mRNA in Escherichia coli

Romilly, Cedric; Lippegaus, Anne; Wagner, Gerhart E. H.

Part of Nucleic Acids Research, p. 12336-12347, 2020

• DOI for An RNA pseudoknot is essential for standby-mediated translation of the tisB toxin mRNA in Escherichia coli
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Small RNAs OmrA and OmrB promote class III flagellar gene expression by inhibiting the synthesis of anti-Sigma factor FlgM

Romilly, Cedric; Hoekzema, Mirthe; Holmqvist, Erik; Wagner, Gerhart E. H.

Part of RNA Biology, p. 872-880, 2020

• DOI for Small RNAs OmrA and OmrB promote class III flagellar gene expression by inhibiting the synthesis of anti-Sigma factor FlgM
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The Length of a DNA T-Tract Modulates Expression of a Virulence-Regulating sRNA

Wagner, E. Gerhart H.; Holmqvist, Erik

Part of Molecular Cell, p. 175-177, 2020

• DOI for The Length of a DNA T-Tract Modulates Expression of a Virulence-Regulating sRNA

A celebration of the life of Marie Öhman (1964-2019)

Bass, Brenda L.; O'Connell, Mary A.; Wagner, E. Gerhart H.

Part of RNA, 2019

• DOI for A celebration of the life of Marie Öhman (1964-2019)

The ribosomal protein S1-dependent standby site in tisB mRNA consists of a single-stranded region and a 5 ' structure element

Romilly, Cedric; Deindl, Sebastian; Wagner, Gerhart E. H.

Part of Proceedings of the National Academy of Sciences of the United States of America, p. 15901-15906, 2019

• DOI for The ribosomal protein S1-dependent standby site in tisB mRNA consists of a single-stranded region and a 5 ' structure element
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Hfq-dependent mRNA unfolding promotes sRNA-based inhibition of translation

Hoekzema, Mirthe; Romilly, Cedric; Holmqvist, Erik; Wagner, Gerhart E. H.

Part of EMBO Journal, 2019

• DOI for Hfq-dependent mRNA unfolding promotes sRNA-based inhibition of translation
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Unstructured 5'-tails act through ribosome standby to override inhibitory structure at ribosome binding sites.

Sterk, Maaike; Romilly, Cedric; Wagner, Gerhart E. H.

Part of Nucleic Acids Research, p. 4188-4199, 2018

• DOI for Unstructured 5'-tails act through ribosome standby to override inhibitory structure at ribosome binding sites.
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Two regulatory RNA elements affect TisB-dependent depolarization and persister formation

Berghoff, Bork A.; Hoekzema, Mirthe; Aulbach, Lena; Wagner, Gerhart E. H.

Part of Molecular Microbiology, p. 1020-1033, 2017

• DOI for Two regulatory RNA elements affect TisB-dependent depolarization and persister formation

RNA-sequence data normalization through in silico prediction of reference genes: the bacterial response to DNA damage as case study

Berghoff, Bork A.; Karlsson, Torgny; Kallman, Thomas; Wagner, Gerhart E. H. et al.

Part of BioData Mining, 2017

• DOI for RNA-sequence data normalization through in silico prediction of reference genes: the bacterial response to DNA damage as case study
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Fluorescent CRISPR Adaptation Reporter for rapid quantification of spacer acquisition

Amlinger, Lina; Hoekzema, Mirthe; Wagner, Gerhart E. H.; Koskiniemi, Sanna et al.

Part of Scientific Reports, 2017

• DOI for Fluorescent CRISPR Adaptation Reporter for rapid quantification of spacer acquisition
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One Gene and Two Proteins: a Leaderless mRNA Supports the Translation of a Shorter Form of the Shigella VirF Regulator

Di Martino, Maria Letizia; Romilly, Cedric; Wagner, Gerhart E. H.; Colonna, Bianca et al.

Part of mBio, 2016

• DOI for One Gene and Two Proteins: a Leaderless mRNA Supports the Translation of a Shorter Form of the Shigella VirF Regulator
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A method to map changes in bacterial surface composition induced by regulatory RNAs in Escherichia coli and Staphylococcus aureus

Hammann, Philippe; Parmentier, Delphine; Cerciat, Marie; Reimegård, Johan et al.

Part of Biochimie, p. 175-179, 2014

• DOI for A method to map changes in bacterial surface composition induced by regulatory RNAs in Escherichia coli and Staphylococcus aureus
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Differential Translation Tunes Uneven Production of Operon-Encoded Proteins

Quax, Tessa E. F.; Wolf, Yuri I.; Koehorst, Jasper J.; Wurtzel, Omri et al.

Part of Cell Reports, p. 938-944, 2013

• DOI for Differential Translation Tunes Uneven Production of Operon-Encoded Proteins
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Massive functional mapping of a 5'-UTR by saturation mutagenesis, phenotypic sorting and deep sequencing

Holmqvist, Erik; Reimegard, Johan; Wagner, Gerhart E. H.

Part of Nucleic Acids Research, 2013

• DOI for Massive functional mapping of a 5'-UTR by saturation mutagenesis, phenotypic sorting and deep sequencing
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Cycling of RNAs on Hfq

Wagner, Gerhart

Part of RNA Biology, p. 619-626, 2013

• DOI for Cycling of RNAs on Hfq

A mixed double negative feedback loop between the sRNA MicF and the global regulator Lrp

Holmqvist, Erik; Unoson, Cecilia; Reimegård, Johan; Wagner, Gerhart E. H.

Part of Molecular Microbiology, p. 414-427, 2012

• DOI for A mixed double negative feedback loop between the sRNA MicF and the global regulator Lrp

MicroRNAs in Amoebozoa: Deep sequencing of the small RNA population in the social amoeba Dictyostelium discoideum reveals developmentally regulated microRNAs

Avesson, Lotta; Reimegård, Johan; Wagner, Gerhart Eduard Heinrich; Söderbom, Fredrik

Part of RNA, p. 1771-1782, 2012

• DOI for MicroRNAs in Amoebozoa: Deep sequencing of the small RNA population in the social amoeba Dictyostelium discoideum reveals developmentally regulated microRNAs

Two antisense RNAs target the transcriptional regulator CsgD to inhibit curli synthesis

Holmqvist, Erik; Reimegård, Johan; Sterk, Maaike; Grantcharova, Nina et al.

Part of EMBO Journal, p. 1840-1850, 2010

• DOI for Two antisense RNAs target the transcriptional regulator CsgD to inhibit curli synthesis

H-NS-mediated repression of CRISPR-based immunity in Escherichia coli K12 can be relieved by the transcription activator LeuO

Westra, Edze R; Pul, Ümit; Heidrich, Nadja; Jore, Matthijs M et al.

Part of Molecular Microbiology, p. 1380-1393, 2010

• DOI for H-NS-mediated repression of CRISPR-based immunity in Escherichia coli K12 can be relieved by the transcription activator LeuO

RNAs actively cycle on the Sm-like protein Hfq

Fender, Aurelie; Elf, Johan; Hampel, Kornelia; Zimmermann, Bastian et al.

Part of Genes & Development, p. 2621-2626, 2010

• DOI for RNAs actively cycle on the Sm-like protein Hfq

Novel role for a bacterial nucleoid protein in translation of mRNAs with suboptimal ribosome-binding sites

Park, Hyun-Sook; Ostberg, Yngve; Johansson, Jorgen; Wagner, Gerhart E. H. et al.

Part of Genes & Development, p. 1345-1350, 2010

• DOI for Novel role for a bacterial nucleoid protein in translation of mRNAs with suboptimal ribosome-binding sites

Analysis of small RNA in fission yeast; centromeric siRNAs are potentially generated through a structured RNA

Djupedal, Ingela; Kos-Braun, C; Mosher, A; Söderholm, Niklas et al.

Part of EMBO Journal, p. 3832-3844, 2009

• DOI for Analysis of small RNA in fission yeast; centromeric siRNAs are potentially generated through a structured RNA

Sensory ataxic neuropathy in golden retriever dogs is caused by a deletion in the mitochondrial tRNA^Tyr gene

Baranowska, Izabella; Jäderlund, Karin Hultin; Nennesmo, Inger; Holmqvist, Erik et al.

Part of PLoS Genetics, 2009

• DOI for Sensory ataxic neuropathy in golden retriever dogs is caused by a deletion in the mitochondrial tRNA^Tyr gene

Kill the messenger: bacterial antisense RNA promotes mRNA decay.

Wagner, Gerhart E. H.

Part of Nature Structural & Molecular Biology, p. 804-806, 2009

• DOI for Kill the messenger: bacterial antisense RNA promotes mRNA decay.

Exploring the complex world of RNA regulation

Romby, Pascale; Wagner, Gerhart E. H.

Part of Biology of the Cell, 2008

• DOI for Exploring the complex world of RNA regulation

A small SOS-induced toxin is targeted against the inner membrane in Escherichia coli

Unoson, Cecilia; Wagner, Gerhart E. H.

Part of Molecular Microbiology, p. 258-70, 2008

• DOI for A small SOS-induced toxin is targeted against the inner membrane in Escherichia coli

An antisense RNA inhibits translation by competing with standby ribosomes

Darfeuille, Fabien; Unoson, Cecilia; Vogel, Jörg; Wagner, Gerhart E. H.

Part of Molecular Cell, p. 381-392, 2007

• DOI for An antisense RNA inhibits translation by competing with standby ribosomes

Sigma E controls biogenesis of the antisense RNA MicA

Udekwu, Klas I.; Wagner, Gerhart E. H.

Part of Nucleic Acids Research, p. 1279-1288, 2007

• DOI for Sigma E controls biogenesis of the antisense RNA MicA

Structure probing of tmRNA in distinct stages of trans-translation

Ivanova, Natalia; Lindell, Magnus; Pavlov, Michael; Holmberg Schiavone, Lovisa et al.

Part of RNA, p. 713-722, 2007

• DOI for Structure probing of tmRNA in distinct stages of trans-translation

The small RNA repertoire of Dictyostelium discoideum and its regulation by components of the RNAi pathway

Hinas, Andrea; Reimegård, Johan; Wagner, Gerhart H.; Nellen, Wolfgang et al.

Part of Nucleic Acids Research, p. 6714-6726, 2007

• DOI for The small RNA repertoire of Dictyostelium discoideum and its regulation by components of the RNAi pathway

Dealing with stable structures at ribosome binding sites: bacterial translation and ribosome standby.

Unoson, Cecilia; Wagner, Gerhart E. H.

Part of RNA Biology, p. 113-117, 2007

The role of RNAs in the regulation of virulence-gene expression.

Romby, Pascale; Vandenesch, Francois; Wagner, Gerhart E. H.

Part of Curr Opin Microbiol, p. 229-36, 2006

RNA - Molekylen som kan stänga av DNA

Wagner, Gerhart E. H.

Part of Forskning och Framsteg, p. 16-20, 2005

Lead(II) cleavage analysis of RNase P RNA in vivo.

Lindell, Magnus; Brännvall, Mathias; Wagner, Gerhart E. H.; Kirsebom, Leif A

Part of RNA, p. 1348-54, 2005

Hfq-dependent regulation of OmpA synthesis is mediated by an an-tisense RNA.

Udekwu, Klas I; Darfeuille, Fabien; Vogel, Jörg; Reimegård, Johan et al.

Part of Genes & Development, p. 2355-2366, 2005

• DOI for Hfq-dependent regulation of OmpA synthesis is mediated by an an-tisense RNA.

Paenibacillus polymyxa Invades Plant Roots and Forms Biofilms.

Timmusk, Salme; Grantcharova, Nina; Wagner, Gerhart E. H.

Part of Appl Environ Microbiol, p. 7292-300, 2005

The small RNA IstR inhibits synthesis of an SOS-induced toxic peptide

Vogel, Jörg; Argaman, Liron; Wagner, Gerhart E. H.; Altuvia, Shoshy

Part of Current Biology, p. 2271-2276, 2004

• DOI for The small RNA IstR inhibits synthesis of an SOS-induced toxic peptide

A repeated GGA motif is critical for the activity and stability of the riboregulator RsmY of Pseudomonas fluorescens

Valverde, Claudio; Lindell, Magnus; Wagner, Gerhart; Haas, Dieter

Part of J Biol Chem, p. 25066-25074, 2004

A repeated GGA motif is critical for the activity and stability of the riboregulator RsmY of Pseudomonas fluorescens

Valverde, Claudio; Lindell, Magnus; Wagner, Gerhart E. H.; Haas, Dieter

Part of J. Biol. Chem., p. 25066-25074, 2004

• DOI for A repeated GGA motif is critical for the activity and stability of the riboregulator RsmY of Pseudomonas fluorescens

Disruption of the gene encoding the V-ATPase subunit A results in inhibition of normal growth and abolished sporulation in Aspergillus nidulans

Melin, Petter; Schnürer, Johan; Wagner, Gerhart

Part of Microbiology, p. 743-748, 2003

• DOI for Disruption of the gene encoding the V-ATPase subunit A results in inhibition of normal growth and abolished sporulation in Aspergillus nidulans

RNomics in Escherichia coli detects new sRNA species and indicates parallel transcriptional output in bacteria

Vogel, Jörg; Bartels, Verena; Tang, Thean Hock; Churakov, Gennady et al.

Part of Nucleic Acids Research, p. 6435-6443, 2003

• DOI for RNomics in Escherichia coli detects new sRNA species and indicates parallel transcriptional output in bacteria

Antisense RNAs everywhere?

Wagner, Gerhart E. H.; Flärdh, Klas

Part of Trends in Genetics, p. 223-226, 2002

Lead(II) as a probe for investigating RNA structure in vivo

Lindell, Magnus; Romby, Pascale; Wagner, Gerhart

Part of RNA, p. 534-541, 2002

Introduction of an RNA stability element at the 5'-end of an antisense RNA cassette increases the inhibition of target RNA translation

Engdahl, Hilde; Lindell, Magnus; Wagner, Gerhart

Part of Antisense Nucleic Acid Drug Dev, p. 29-40, 2001

The plant-growth-promoting rhizobacterium Paenibacillus polymyxa induces changes in Arabidopsis thaliana gene expression: a possible connection between biotic and abiotic stress responses

Timmusk, Salme; Wagner, Gerhart E. H.

Part of MPMI, p. 951-959, 1999

PcnB is required for the rapid degradation of RNAI, the antisense RNA that controls the copy number of ColE1-related plasmids

He, Lin; Söderbom, Fredrik; Wagner, Gerhart; Binnie, Uta et al.

Part of Molecular Microbiology, p. 1131-1142, 1993

• DOI for PcnB is required for the rapid degradation of RNAI, the antisense RNA that controls the copy number of ColE1-related plasmids

Paenibacillus polymyxa colonization of Arabidopsis thaliana roots

Timmusk, Salme; Grantcharova, Nina; Flärdh, Klas; Wagner, Gerhart E. H.

Part of AEM

Lead(II) cleavage analysis of RNase P RNA in vivo

Lindell, Magnus; Brännvall, Mathias; Wagner, Gerhart; Kirsebom, Leif

Impact of bacterial sRNAs in stress responses

Holmqvist, Erik; Wagner, E. Gerhart H.

Part of Biochemical Society Transactions, p. 1203-1212, 2017

• DOI for Impact of bacterial sRNAs in stress responses
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RNA-based regulation in type I toxin-antitoxin systems and its implication for bacterial persistence

Berghoff, Bork A.; Wagner, Gerhart E. H.

Part of Current Genetics, p. 1011-1016, 2017

• DOI for RNA-based regulation in type I toxin-antitoxin systems and its implication for bacterial persistence
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The toxin-antitoxin system tisB-istR1 Expression, regulation and biological role in persister phenotypes

Wagner, Gerhart E. H.; Unoson, Cecilia

Part of RNA Biology, p. 1513-1519, 2012

• DOI for The toxin-antitoxin system tisB-istR1 Expression, regulation and biological role in persister phenotypes

RNA antitoxins

Gerdes, Kenn; Wagner, Gerhart H.

Part of Current Opinion in Microbiology, p. 117-124, 2007

• DOI for RNA antitoxins

Target identification of small noncoding RNAs in bacteria

Vogel, Jörg; Wagner, Gerhart E. H.

Part of Current Opinion in Microbiology, p. 262-270, 2007

• DOI for Target identification of small noncoding RNAs in bacteria

Small RNAs in Bacteria and Archaea: Who They Are, What They Do, and How They Do It

Wagner, Gerhart; Romby, Pascale

Part of Advances in Genetics, Vol 90, p. 133-208, Elsevier, 2015

• DOI for Small RNAs in Bacteria and Archaea: Who They Are, What They Do, and How They Do It

Small regulatory RNAs in bacteria

Wagner, Gerhart E. H.; Darfeuille, Fabien

Part of Small RNAs, p. 1-29, Springer Verlag Berlin Heidelberg, 2006

• DOI for Small regulatory RNAs in bacteria

Approaches to identify novel non-messenger RNAs in bacteria and to investigate their biological functions: Functional analysis of identified non-mRNA

Wagner, Gerhart E. H.; Vogel, Jörg

Part of Handbook of RNA Biochemistry, p. 614-642, Wiley-VCH Verlagsgesellschaft, 2005

• DOI for Approaches to identify novel non-messenger RNAs in bacteria and to investigate their biological functions: Functional analysis of identified non-mRNA

Regulation of translational accuracy

Wagner, Gerhart E. H.

1981

AntisenseRNA: fast, specific target prediction for bacterial sRNAs through models of interaction and evolutionary conservation

Reimegård, Johan; Ardell, David; Wagner, Gerhart Eduard Heinrich

The sRNA MicF targets its own regulator Lrp and promotes a positive feedback loop

Holmqvist, Erik; Unoson, Cecilia; Reimegård, Johan; Wagner, Gerhart E. H.

The Escherichia coli luxS mRNA is processed in an RNase III- dependent fashion in

Udekwu, Klas I.; Wagner, Gerhart H.

Antagonistic effects of Paenibacillus polymyxa towards the oomycete plant pathogens Phytophthora palmivora and Pythium aphanidermatum

Timmusk, Salme; van West, Pieter; Gow, Neil A. R.; Wagner, Gerhart E. H.

Biographical item: "Obituary - Martin Tabler" in Nucleic Acids Research, Vol 33, Issue 10, pp 3083-3084

Wagner, Gerhart E. H.; Nellen, Wolfgang; Berzal-Herranz, Alfredo; Sczakiel, Georg

2005

• DOI for Biographical item: "Obituary - Martin Tabler" in Nucleic Acids Research, Vol 33, Issue 10, pp 3083-3084