Gerhart Wagner

The RNA-binding protein ProQ promotes antibiotic persistence in Salmonella

Rizvanovic, Alisa; Michaux, Charlotte; Panza, Margherita; Iloglu, Zeynep et al.

Ingår i Molecular and Cellular Biology, 2022

• DOI för The RNA-binding protein ProQ promotes antibiotic persistence in Salmonella
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A nascent polypeptide sequence modulates DnaA translation elongation in response to nutrient availability

Felletti, Michele; Romilly, Cedric; Wagner, Gerhart E. H.; Jonas, Kristina

Ingår i eLIFE, 2021

• DOI för A nascent polypeptide sequence modulates DnaA translation elongation in response to nutrient availability
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An RNA pseudoknot is essential for standby-mediated translation of the tisB toxin mRNA in Escherichia coli

Romilly, Cedric; Lippegaus, Anne; Wagner, Gerhart E. H.

Ingår i Nucleic Acids Research, s. 12336-12347, 2020

• DOI för An RNA pseudoknot is essential for standby-mediated translation of the tisB toxin mRNA in Escherichia coli
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Small RNAs OmrA and OmrB promote class III flagellar gene expression by inhibiting the synthesis of anti-Sigma factor FlgM

Romilly, Cedric; Hoekzema, Mirthe; Holmqvist, Erik; Wagner, Gerhart E. H.

Ingår i RNA Biology, s. 872-880, 2020

• DOI för Small RNAs OmrA and OmrB promote class III flagellar gene expression by inhibiting the synthesis of anti-Sigma factor FlgM
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The Length of a DNA T-Tract Modulates Expression of a Virulence-Regulating sRNA

Wagner, E. Gerhart H.; Holmqvist, Erik

Ingår i Molecular Cell, s. 175-177, 2020

• DOI för The Length of a DNA T-Tract Modulates Expression of a Virulence-Regulating sRNA

The RNA-binding protein ProQ promotes antibiotic persistence in Salmonella

Rizvanovic, Alisa; Michaux, Charlotte; Panza, Margherita; Iloglu, Zeynep et al.

Ingår i Molecular and Cellular Biology, 2022

• DOI för The RNA-binding protein ProQ promotes antibiotic persistence in Salmonella
• Ladda ner fulltext (pdf) av The RNA-binding protein ProQ promotes antibiotic persistence in Salmonella

A nascent polypeptide sequence modulates DnaA translation elongation in response to nutrient availability

Felletti, Michele; Romilly, Cedric; Wagner, Gerhart E. H.; Jonas, Kristina

Ingår i eLIFE, 2021

• DOI för A nascent polypeptide sequence modulates DnaA translation elongation in response to nutrient availability
• Ladda ner fulltext (pdf) av A nascent polypeptide sequence modulates DnaA translation elongation in response to nutrient availability

An RNA pseudoknot is essential for standby-mediated translation of the tisB toxin mRNA in Escherichia coli

Romilly, Cedric; Lippegaus, Anne; Wagner, Gerhart E. H.

Ingår i Nucleic Acids Research, s. 12336-12347, 2020

• DOI för An RNA pseudoknot is essential for standby-mediated translation of the tisB toxin mRNA in Escherichia coli
• Ladda ner fulltext (pdf) av An RNA pseudoknot is essential for standby-mediated translation of the tisB toxin mRNA in Escherichia coli

Small RNAs OmrA and OmrB promote class III flagellar gene expression by inhibiting the synthesis of anti-Sigma factor FlgM

Romilly, Cedric; Hoekzema, Mirthe; Holmqvist, Erik; Wagner, Gerhart E. H.

Ingår i RNA Biology, s. 872-880, 2020

• DOI för Small RNAs OmrA and OmrB promote class III flagellar gene expression by inhibiting the synthesis of anti-Sigma factor FlgM
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The Length of a DNA T-Tract Modulates Expression of a Virulence-Regulating sRNA

Wagner, E. Gerhart H.; Holmqvist, Erik

Ingår i Molecular Cell, s. 175-177, 2020

• DOI för The Length of a DNA T-Tract Modulates Expression of a Virulence-Regulating sRNA

A celebration of the life of Marie Öhman (1964-2019)

Bass, Brenda L.; O'Connell, Mary A.; Wagner, E. Gerhart H.

Ingår i RNA, 2019

• DOI för A celebration of the life of Marie Öhman (1964-2019)

The ribosomal protein S1-dependent standby site in tisB mRNA consists of a single-stranded region and a 5 ' structure element

Romilly, Cedric; Deindl, Sebastian; Wagner, Gerhart E. H.

Ingår i Proceedings of the National Academy of Sciences of the United States of America, s. 15901-15906, 2019

• DOI för The ribosomal protein S1-dependent standby site in tisB mRNA consists of a single-stranded region and a 5 ' structure element
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Hfq-dependent mRNA unfolding promotes sRNA-based inhibition of translation

Hoekzema, Mirthe; Romilly, Cedric; Holmqvist, Erik; Wagner, Gerhart E. H.

Ingår i EMBO Journal, 2019

• DOI för Hfq-dependent mRNA unfolding promotes sRNA-based inhibition of translation
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Unstructured 5'-tails act through ribosome standby to override inhibitory structure at ribosome binding sites.

Sterk, Maaike; Romilly, Cedric; Wagner, Gerhart E. H.

Ingår i Nucleic Acids Research, s. 4188-4199, 2018

• DOI för Unstructured 5'-tails act through ribosome standby to override inhibitory structure at ribosome binding sites.
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Two regulatory RNA elements affect TisB-dependent depolarization and persister formation

Berghoff, Bork A.; Hoekzema, Mirthe; Aulbach, Lena; Wagner, Gerhart E. H.

Ingår i Molecular Microbiology, s. 1020-1033, 2017

• DOI för Two regulatory RNA elements affect TisB-dependent depolarization and persister formation

RNA-sequence data normalization through in silico prediction of reference genes: the bacterial response to DNA damage as case study

Berghoff, Bork A.; Karlsson, Torgny; Kallman, Thomas; Wagner, Gerhart E. H. et al.

Ingår i BioData Mining, 2017

• DOI för RNA-sequence data normalization through in silico prediction of reference genes: the bacterial response to DNA damage as case study
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Fluorescent CRISPR Adaptation Reporter for rapid quantification of spacer acquisition

Amlinger, Lina; Hoekzema, Mirthe; Wagner, Gerhart E. H.; Koskiniemi, Sanna et al.

Ingår i Scientific Reports, 2017

• DOI för Fluorescent CRISPR Adaptation Reporter for rapid quantification of spacer acquisition
• Ladda ner fulltext (pdf) av Fluorescent CRISPR Adaptation Reporter for rapid quantification of spacer acquisition

One Gene and Two Proteins: a Leaderless mRNA Supports the Translation of a Shorter Form of the Shigella VirF Regulator

Di Martino, Maria Letizia; Romilly, Cedric; Wagner, Gerhart E. H.; Colonna, Bianca et al.

Ingår i mBio, 2016

• DOI för One Gene and Two Proteins: a Leaderless mRNA Supports the Translation of a Shorter Form of the Shigella VirF Regulator
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A method to map changes in bacterial surface composition induced by regulatory RNAs in Escherichia coli and Staphylococcus aureus

Hammann, Philippe; Parmentier, Delphine; Cerciat, Marie; Reimegård, Johan et al.

Ingår i Biochimie, s. 175-179, 2014

• DOI för A method to map changes in bacterial surface composition induced by regulatory RNAs in Escherichia coli and Staphylococcus aureus
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Differential Translation Tunes Uneven Production of Operon-Encoded Proteins

Quax, Tessa E. F.; Wolf, Yuri I.; Koehorst, Jasper J.; Wurtzel, Omri et al.

Ingår i Cell Reports, s. 938-944, 2013

• DOI för Differential Translation Tunes Uneven Production of Operon-Encoded Proteins
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Massive functional mapping of a 5'-UTR by saturation mutagenesis, phenotypic sorting and deep sequencing

Holmqvist, Erik; Reimegard, Johan; Wagner, Gerhart E. H.

Ingår i Nucleic Acids Research, 2013

• DOI för Massive functional mapping of a 5'-UTR by saturation mutagenesis, phenotypic sorting and deep sequencing
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Cycling of RNAs on Hfq

Wagner, Gerhart

Ingår i RNA Biology, s. 619-626, 2013

• DOI för Cycling of RNAs on Hfq

A mixed double negative feedback loop between the sRNA MicF and the global regulator Lrp

Holmqvist, Erik; Unoson, Cecilia; Reimegård, Johan; Wagner, Gerhart E. H.

Ingår i Molecular Microbiology, s. 414-427, 2012

• DOI för A mixed double negative feedback loop between the sRNA MicF and the global regulator Lrp

MicroRNAs in Amoebozoa: Deep sequencing of the small RNA population in the social amoeba Dictyostelium discoideum reveals developmentally regulated microRNAs

Avesson, Lotta; Reimegård, Johan; Wagner, Gerhart Eduard Heinrich; Söderbom, Fredrik

Ingår i RNA, s. 1771-1782, 2012

• DOI för MicroRNAs in Amoebozoa: Deep sequencing of the small RNA population in the social amoeba Dictyostelium discoideum reveals developmentally regulated microRNAs

Two antisense RNAs target the transcriptional regulator CsgD to inhibit curli synthesis

Holmqvist, Erik; Reimegård, Johan; Sterk, Maaike; Grantcharova, Nina et al.

Ingår i EMBO Journal, s. 1840-1850, 2010

• DOI för Two antisense RNAs target the transcriptional regulator CsgD to inhibit curli synthesis

H-NS-mediated repression of CRISPR-based immunity in Escherichia coli K12 can be relieved by the transcription activator LeuO

Westra, Edze R; Pul, Ümit; Heidrich, Nadja; Jore, Matthijs M et al.

Ingår i Molecular Microbiology, s. 1380-1393, 2010

• DOI för H-NS-mediated repression of CRISPR-based immunity in Escherichia coli K12 can be relieved by the transcription activator LeuO

RNAs actively cycle on the Sm-like protein Hfq

Fender, Aurelie; Elf, Johan; Hampel, Kornelia; Zimmermann, Bastian et al.

Ingår i Genes & Development, s. 2621-2626, 2010

• DOI för RNAs actively cycle on the Sm-like protein Hfq

Novel role for a bacterial nucleoid protein in translation of mRNAs with suboptimal ribosome-binding sites

Park, Hyun-Sook; Ostberg, Yngve; Johansson, Jorgen; Wagner, Gerhart E. H. et al.

Ingår i Genes & Development, s. 1345-1350, 2010

• DOI för Novel role for a bacterial nucleoid protein in translation of mRNAs with suboptimal ribosome-binding sites

Analysis of small RNA in fission yeast; centromeric siRNAs are potentially generated through a structured RNA

Djupedal, Ingela; Kos-Braun, C; Mosher, A; Söderholm, Niklas et al.

Ingår i EMBO Journal, s. 3832-3844, 2009

• DOI för Analysis of small RNA in fission yeast; centromeric siRNAs are potentially generated through a structured RNA

Sensory ataxic neuropathy in golden retriever dogs is caused by a deletion in the mitochondrial tRNA^Tyr gene

Baranowska, Izabella; Jäderlund, Karin Hultin; Nennesmo, Inger; Holmqvist, Erik et al.

Ingår i PLoS Genetics, 2009

• DOI för Sensory ataxic neuropathy in golden retriever dogs is caused by a deletion in the mitochondrial tRNA^Tyr gene

Kill the messenger: bacterial antisense RNA promotes mRNA decay.

Wagner, Gerhart E. H.

Ingår i Nature Structural & Molecular Biology, s. 804-806, 2009

• DOI för Kill the messenger: bacterial antisense RNA promotes mRNA decay.

Exploring the complex world of RNA regulation

Romby, Pascale; Wagner, Gerhart E. H.

Ingår i Biology of the Cell, 2008

• DOI för Exploring the complex world of RNA regulation

A small SOS-induced toxin is targeted against the inner membrane in Escherichia coli

Unoson, Cecilia; Wagner, Gerhart E. H.

Ingår i Molecular Microbiology, s. 258-70, 2008

• DOI för A small SOS-induced toxin is targeted against the inner membrane in Escherichia coli

An antisense RNA inhibits translation by competing with standby ribosomes

Darfeuille, Fabien; Unoson, Cecilia; Vogel, Jörg; Wagner, Gerhart E. H.

Ingår i Molecular Cell, s. 381-392, 2007

• DOI för An antisense RNA inhibits translation by competing with standby ribosomes

Sigma E controls biogenesis of the antisense RNA MicA

Udekwu, Klas I.; Wagner, Gerhart E. H.

Ingår i Nucleic Acids Research, s. 1279-1288, 2007

• DOI för Sigma E controls biogenesis of the antisense RNA MicA

Structure probing of tmRNA in distinct stages of trans-translation

Ivanova, Natalia; Lindell, Magnus; Pavlov, Michael; Holmberg Schiavone, Lovisa et al.

Ingår i RNA, s. 713-722, 2007

• DOI för Structure probing of tmRNA in distinct stages of trans-translation

The small RNA repertoire of Dictyostelium discoideum and its regulation by components of the RNAi pathway

Hinas, Andrea; Reimegård, Johan; Wagner, Gerhart H.; Nellen, Wolfgang et al.

Ingår i Nucleic Acids Research, s. 6714-6726, 2007

• DOI för The small RNA repertoire of Dictyostelium discoideum and its regulation by components of the RNAi pathway

Dealing with stable structures at ribosome binding sites: bacterial translation and ribosome standby.

Unoson, Cecilia; Wagner, Gerhart E. H.

Ingår i RNA Biology, s. 113-117, 2007

The role of RNAs in the regulation of virulence-gene expression.

Romby, Pascale; Vandenesch, Francois; Wagner, Gerhart E. H.

Ingår i Curr Opin Microbiol, s. 229-36, 2006

RNA - Molekylen som kan stänga av DNA

Wagner, Gerhart E. H.

Ingår i Forskning och Framsteg, s. 16-20, 2005

Lead(II) cleavage analysis of RNase P RNA in vivo.

Lindell, Magnus; Brännvall, Mathias; Wagner, Gerhart E. H.; Kirsebom, Leif A

Ingår i RNA, s. 1348-54, 2005

Hfq-dependent regulation of OmpA synthesis is mediated by an an-tisense RNA.

Udekwu, Klas I; Darfeuille, Fabien; Vogel, Jörg; Reimegård, Johan et al.

Ingår i Genes & Development, s. 2355-2366, 2005

• DOI för Hfq-dependent regulation of OmpA synthesis is mediated by an an-tisense RNA.

Paenibacillus polymyxa Invades Plant Roots and Forms Biofilms.

Timmusk, Salme; Grantcharova, Nina; Wagner, Gerhart E. H.

Ingår i Appl Environ Microbiol, s. 7292-300, 2005

The small RNA IstR inhibits synthesis of an SOS-induced toxic peptide

Vogel, Jörg; Argaman, Liron; Wagner, Gerhart E. H.; Altuvia, Shoshy

Ingår i Current Biology, s. 2271-2276, 2004

• DOI för The small RNA IstR inhibits synthesis of an SOS-induced toxic peptide

A repeated GGA motif is critical for the activity and stability of the riboregulator RsmY of Pseudomonas fluorescens

Valverde, Claudio; Lindell, Magnus; Wagner, Gerhart; Haas, Dieter

Ingår i J Biol Chem, s. 25066-25074, 2004

A repeated GGA motif is critical for the activity and stability of the riboregulator RsmY of Pseudomonas fluorescens

Valverde, Claudio; Lindell, Magnus; Wagner, Gerhart E. H.; Haas, Dieter

Ingår i J. Biol. Chem., s. 25066-25074, 2004

• DOI för A repeated GGA motif is critical for the activity and stability of the riboregulator RsmY of Pseudomonas fluorescens

Disruption of the gene encoding the V-ATPase subunit A results in inhibition of normal growth and abolished sporulation in Aspergillus nidulans

Melin, Petter; Schnürer, Johan; Wagner, Gerhart

Ingår i Microbiology, s. 743-748, 2003

• DOI för Disruption of the gene encoding the V-ATPase subunit A results in inhibition of normal growth and abolished sporulation in Aspergillus nidulans

RNomics in Escherichia coli detects new sRNA species and indicates parallel transcriptional output in bacteria

Vogel, Jörg; Bartels, Verena; Tang, Thean Hock; Churakov, Gennady et al.

Ingår i Nucleic Acids Research, s. 6435-6443, 2003

• DOI för RNomics in Escherichia coli detects new sRNA species and indicates parallel transcriptional output in bacteria

Antisense RNAs everywhere?

Wagner, Gerhart E. H.; Flärdh, Klas

Ingår i Trends in Genetics, s. 223-226, 2002

Lead(II) as a probe for investigating RNA structure in vivo

Lindell, Magnus; Romby, Pascale; Wagner, Gerhart

Ingår i RNA, s. 534-541, 2002

Introduction of an RNA stability element at the 5'-end of an antisense RNA cassette increases the inhibition of target RNA translation

Engdahl, Hilde; Lindell, Magnus; Wagner, Gerhart

Ingår i Antisense Nucleic Acid Drug Dev, s. 29-40, 2001

The plant-growth-promoting rhizobacterium Paenibacillus polymyxa induces changes in Arabidopsis thaliana gene expression: a possible connection between biotic and abiotic stress responses

Timmusk, Salme; Wagner, Gerhart E. H.

Ingår i MPMI, s. 951-959, 1999

PcnB is required for the rapid degradation of RNAI, the antisense RNA that controls the copy number of ColE1-related plasmids

He, Lin; Söderbom, Fredrik; Wagner, Gerhart; Binnie, Uta et al.

Ingår i Molecular Microbiology, s. 1131-1142, 1993

• DOI för PcnB is required for the rapid degradation of RNAI, the antisense RNA that controls the copy number of ColE1-related plasmids

Paenibacillus polymyxa colonization of Arabidopsis thaliana roots

Timmusk, Salme; Grantcharova, Nina; Flärdh, Klas; Wagner, Gerhart E. H.

Ingår i AEM

Lead(II) cleavage analysis of RNase P RNA in vivo

Lindell, Magnus; Brännvall, Mathias; Wagner, Gerhart; Kirsebom, Leif

Impact of bacterial sRNAs in stress responses

Holmqvist, Erik; Wagner, E. Gerhart H.

Ingår i Biochemical Society Transactions, s. 1203-1212, 2017

• DOI för Impact of bacterial sRNAs in stress responses
• Ladda ner fulltext (pdf) av Impact of bacterial sRNAs in stress responses

RNA-based regulation in type I toxin-antitoxin systems and its implication for bacterial persistence

Berghoff, Bork A.; Wagner, Gerhart E. H.

Ingår i Current Genetics, s. 1011-1016, 2017

• DOI för RNA-based regulation in type I toxin-antitoxin systems and its implication for bacterial persistence
• Ladda ner fulltext (pdf) av RNA-based regulation in type I toxin-antitoxin systems and its implication for bacterial persistence

The toxin-antitoxin system tisB-istR1 Expression, regulation and biological role in persister phenotypes

Wagner, Gerhart E. H.; Unoson, Cecilia

Ingår i RNA Biology, s. 1513-1519, 2012

• DOI för The toxin-antitoxin system tisB-istR1 Expression, regulation and biological role in persister phenotypes

RNA antitoxins

Gerdes, Kenn; Wagner, Gerhart H.

Ingår i Current Opinion in Microbiology, s. 117-124, 2007

• DOI för RNA antitoxins

Target identification of small noncoding RNAs in bacteria

Vogel, Jörg; Wagner, Gerhart E. H.

Ingår i Current Opinion in Microbiology, s. 262-270, 2007

• DOI för Target identification of small noncoding RNAs in bacteria

Regulation of translational accuracy

Wagner, Gerhart E. H.

1981

Small RNAs in Bacteria and Archaea: Who They Are, What They Do, and How They Do It

Wagner, Gerhart; Romby, Pascale

Ingår i Advances in Genetics, Vol 90, s. 133-208, Elsevier, 2015

• DOI för Small RNAs in Bacteria and Archaea: Who They Are, What They Do, and How They Do It

Small regulatory RNAs in bacteria

Wagner, Gerhart E. H.; Darfeuille, Fabien

Ingår i Small RNAs, s. 1-29, Springer Verlag Berlin Heidelberg, 2006

• DOI för Small regulatory RNAs in bacteria

Approaches to identify novel non-messenger RNAs in bacteria and to investigate their biological functions: Functional analysis of identified non-mRNA

Wagner, Gerhart E. H.; Vogel, Jörg

Ingår i Handbook of RNA Biochemistry, s. 614-642, Wiley-VCH Verlagsgesellschaft, 2005

• DOI för Approaches to identify novel non-messenger RNAs in bacteria and to investigate their biological functions: Functional analysis of identified non-mRNA

AntisenseRNA: fast, specific target prediction for bacterial sRNAs through models of interaction and evolutionary conservation

Reimegård, Johan; Ardell, David; Wagner, Gerhart Eduard Heinrich

The sRNA MicF targets its own regulator Lrp and promotes a positive feedback loop

Holmqvist, Erik; Unoson, Cecilia; Reimegård, Johan; Wagner, Gerhart E. H.

The Escherichia coli luxS mRNA is processed in an RNase III- dependent fashion in

Udekwu, Klas I.; Wagner, Gerhart H.

Antagonistic effects of Paenibacillus polymyxa towards the oomycete plant pathogens Phytophthora palmivora and Pythium aphanidermatum

Timmusk, Salme; van West, Pieter; Gow, Neil A. R.; Wagner, Gerhart E. H.

Biographical item: "Obituary - Martin Tabler" in Nucleic Acids Research, Vol 33, Issue 10, pp 3083-3084

Wagner, Gerhart E. H.; Nellen, Wolfgang; Berzal-Herranz, Alfredo; Sczakiel, Georg

2005

• DOI för Biographical item: "Obituary - Martin Tabler" in Nucleic Acids Research, Vol 33, Issue 10, pp 3083-3084