Orcun Göksel
Professor at Department of Information Technology; Vi3; Image Analysis
- Telephone:
- +46 18 471 34 60
- E-mail:
- orcun.goksel@it.uu.se
- Visiting address:
- Hus 10, Regementsvägen 10
- Postal address:
- Box 524
751 20 UPPSALA
- Academic merits:
- Docent
- ORCID:
- 0000-0002-8639-7373
Biography
Prof. Goksel received two BSc degrees in electrical engineering (2001) and in computer engineering/science (2002) from Middle East Technical University, Ankara, Turkey. He received his MASc (2004) and PhD (2009) degrees in the Department of Electrical and Computer Engineering at the University of British Columbia, Vancouver, Canada. In 2014, he was appointed as a Swiss National Science Foundation (SNSF) Professor at the Department of Information Technology and Electrical Engineering at ETH Zurich, Switzerland. He then founded and has still been leading the Computer-assisted Applications in Medicine (CAiM) group. In 2020, he joined the Department of Information Technology at Uppsala University, Sweden, as an associate professor, and in 2024 he was appointed as a (full) professor of Computerised Image Processing.
Prof. Goksel has received the 2016 ETH Spark Award (for most promising invention of the year), the 2014 CTI Swiss MedTech Award, and the 2011 WAGS Innovation in Technology Award (for best dissertation in western North America). He supervised several master's and PhD students as well as postdoctoral fellows.
Research
Basic and applied research in the Computer-assisted Applications in Medicine research (CAiM) group, led by Orcun Göksel, involves data analysis and information extraction, on topics lying at the intersection of multiple disciplines: computer science, engineering, and medicine. With the involvement of diverse and cross-disciplinary skill-set, the group aims to devise novel imaging and image analysis techniques, and develop them for clinical translation. The group’s efforts push the boundaries of diagnostic and surgical procedures as well as minimally-invasive interventions.
Research in CAiM is conducted in close collaboration with clinical as well as industrial partners, where the research results have a strong translational component, both clinically and commercially. To that end, CAiM aims to develop innovative diagnostic and interventional applications, focusing on data analysis from imaging to abstracting patient-specific models and representations, and from there to optimal intervention planning and intra-operative execution.
A list of publications can be found on my Google scholar page. Some research highlights are demonstrated at: http://goksel.org/
Media
A visual summary of my research interests

Publications
Selection of publications
-
FGGP: Fixed-Rate Gradient-First Gradual Pruning
Part of Image Analysis, p. 3-15, 2025
-
Part of International Journal of Computer Assisted Radiology and Surgery, p. 1541-1549, 2025
- DOI for Uncertainty estimation for trust attribution to speed-of-sound reconstruction with variational networks
- Download full text (pdf) of Uncertainty estimation for trust attribution to speed-of-sound reconstruction with variational networks
-
Learning the Imaging Model of Speed-of-Sound Reconstruction via a Convolutional Formulation
Part of IEEE Transactions on Medical Imaging, p. 3600-3609, 2025
-
Part of Medical Image Analysis, 2025
-
Multi-scale Feature Alignment for Continual Learning of Unlabeled Domains
Part of IEEE Transactions on Medical Imaging, p. 2599-2609, 2024
- DOI for Multi-scale Feature Alignment for Continual Learning of Unlabeled Domains
- Download full text (pdf) of Multi-scale Feature Alignment for Continual Learning of Unlabeled Domains
-
Generative feature-driven image replay for continual learning
Part of Image and Vision Computing, 2024
-
Generative appearance replay for continual unsupervised domain adaptation
Part of Medical Image Analysis, p. 102924-102924, 2023
- DOI for Generative appearance replay for continual unsupervised domain adaptation
- Download full text (pdf) of Generative appearance replay for continual unsupervised domain adaptation
Recent publications
-
Image-based metrics in ultrasound for estimation of global speed of sound
Part of Ultrasonics, 2026
- DOI for Image-based metrics in ultrasound for estimation of global speed of sound
- Download full text (pdf) of Image-based metrics in ultrasound for estimation of global speed of sound
-
Part of European Radiology, p. 1490-1501, 2025
- DOI for Breast Density Assessment via Quantitative Sound-Speed Measurement Using Conventional Ultrasound Transducers
- Download full text (pdf) of Breast Density Assessment via Quantitative Sound-Speed Measurement Using Conventional Ultrasound Transducers
-
Pulse-Echo Imaging of Breast Speed of Sound as a Potential Biomarker for Breast Cancer
Part of Ultrasound in Medicine and Biology, p. 1831-1839, 2025
- DOI for Pulse-Echo Imaging of Breast Speed of Sound as a Potential Biomarker for Breast Cancer
- Download full text (pdf) of Pulse-Echo Imaging of Breast Speed of Sound as a Potential Biomarker for Breast Cancer
-
Sound Speed Approximation Using B-mode Image Alignment with Steered Focused Transmits
Part of 2025 IEEE International Ultrasonics Symposium (IUS), p. 1-4, 2025
-
FGGP: Fixed-Rate Gradient-First Gradual Pruning
Part of Image Analysis, p. 3-15, 2025
All publications
Articles in journal
-
Image-based metrics in ultrasound for estimation of global speed of sound
Part of Ultrasonics, 2026
- DOI for Image-based metrics in ultrasound for estimation of global speed of sound
- Download full text (pdf) of Image-based metrics in ultrasound for estimation of global speed of sound
-
Part of European Radiology, p. 1490-1501, 2025
- DOI for Breast Density Assessment via Quantitative Sound-Speed Measurement Using Conventional Ultrasound Transducers
- Download full text (pdf) of Breast Density Assessment via Quantitative Sound-Speed Measurement Using Conventional Ultrasound Transducers
-
Pulse-Echo Imaging of Breast Speed of Sound as a Potential Biomarker for Breast Cancer
Part of Ultrasound in Medicine and Biology, p. 1831-1839, 2025
- DOI for Pulse-Echo Imaging of Breast Speed of Sound as a Potential Biomarker for Breast Cancer
- Download full text (pdf) of Pulse-Echo Imaging of Breast Speed of Sound as a Potential Biomarker for Breast Cancer
-
Part of International Journal of Computer Assisted Radiology and Surgery, p. 1541-1549, 2025
- DOI for Uncertainty estimation for trust attribution to speed-of-sound reconstruction with variational networks
- Download full text (pdf) of Uncertainty estimation for trust attribution to speed-of-sound reconstruction with variational networks
-
Learning the Imaging Model of Speed-of-Sound Reconstruction via a Convolutional Formulation
Part of IEEE Transactions on Medical Imaging, p. 3600-3609, 2025
-
Learning the Imaging Model of Speed-of-Sound Reconstruction via a Convolutional Formulation
Part of IEEE Transactions on Medical Imaging, p. 3600-3609, 2025
-
Part of Medical Image Analysis, 2025
-
Multi-scale Feature Alignment for Continual Learning of Unlabeled Domains
Part of IEEE Transactions on Medical Imaging, p. 2599-2609, 2024
- DOI for Multi-scale Feature Alignment for Continual Learning of Unlabeled Domains
- Download full text (pdf) of Multi-scale Feature Alignment for Continual Learning of Unlabeled Domains
-
Generative feature-driven image replay for continual learning
Part of Image and Vision Computing, 2024
-
HDRfeat: A feature-rich network for high dynamic range image reconstruction
Part of Pattern Recognition Letters, p. 148-154, 2024
-
Part of Journal of Investigative Dermatology, p. 2103-210700, 2024
- DOI for Calpain Inhibition Protects against UVB-Induced Degradation of Dermal-Epidermal Junction-Associated Proteins
- Download full text (pdf) of Calpain Inhibition Protects against UVB-Induced Degradation of Dermal-Epidermal Junction-Associated Proteins
-
Part of Nature Communications, 2024
- DOI for Longevity interventions modulate mechanotransduction and extracellular matrix homeostasis in C. elegans
- Download full text (pdf) of Longevity interventions modulate mechanotransduction and extracellular matrix homeostasis in C. elegans
-
Robust Imaging of Speed-of-Sound Using Virtual Source Transmission
Part of IEEE Transactions on Ultrasonics, Ferroelectrics and Frequency Control, p. 1308-1318, 2023
-
Analytical Estimation of Beamforming Speed-of-Sound Using Transmission Geometry
Part of Ultrasonics, 2023
- DOI for Analytical Estimation of Beamforming Speed-of-Sound Using Transmission Geometry
- Download full text (pdf) of Analytical Estimation of Beamforming Speed-of-Sound Using Transmission Geometry
-
Weakly supervised joint whole-slide segmentation and classification in prostate cancer
Part of Medical Image Analysis, 2023
-
Generative appearance replay for continual unsupervised domain adaptation
Part of Medical Image Analysis, p. 102924-102924, 2023
- DOI for Generative appearance replay for continual unsupervised domain adaptation
- Download full text (pdf) of Generative appearance replay for continual unsupervised domain adaptation
-
Computational analysis of subscapularis tears and pectoralis major transfers on muscular activity
Part of Clinical Biomechanics, 2022
- DOI for Computational analysis of subscapularis tears and pectoralis major transfers on muscular activity
- Download full text (pdf) of Computational analysis of subscapularis tears and pectoralis major transfers on muscular activity
-
Spectral Ultrasound Imaging of Speed-of-Sound and Attenuation Using an Acoustic Mirror
Part of Frontiers in Physics, 2022
- DOI for Spectral Ultrasound Imaging of Speed-of-Sound and Attenuation Using an Acoustic Mirror
- Download full text (pdf) of Spectral Ultrasound Imaging of Speed-of-Sound and Attenuation Using an Acoustic Mirror
-
Hierarchical graph representations in digital pathology
Part of Medical Image Analysis, 2022
- DOI for Hierarchical graph representations in digital pathology
- Download full text (pdf) of Hierarchical graph representations in digital pathology
-
Part of Science Advances, 2022
-
Part of Nature Machine Intelligence, p. 799-811, 2021
-
Learning ultrasound rendering from cross-sectional model slices for simulated training
Part of International Journal of Computer Assisted Radiology and Surgery, p. 721-730, 2021
- DOI for Learning ultrasound rendering from cross-sectional model slices for simulated training
- Download full text (pdf) of Learning ultrasound rendering from cross-sectional model slices for simulated training
-
Part of Frontiers in Physics, 2021
- DOI for Phase-Aberration Correction in Shear-Wave Elastography Imaging Using Local Speed-of-Sound Adaptive Beamforming
- Download full text (pdf) of Phase-Aberration Correction in Shear-Wave Elastography Imaging Using Local Speed-of-Sound Adaptive Beamforming
-
Part of International Journal of Computer Assisted Radiology and Surgery, p. 707-708, 2021
- DOI for IJCARS-IPCAI 2021 Special Issue: Information Processing for Computer-Assisted Interventions, 12th International Conference 2021-Part 1
- Download full text (pdf) of IJCARS-IPCAI 2021 Special Issue: Information Processing for Computer-Assisted Interventions, 12th International Conference 2021-Part 1
Conference papers
-
Sound Speed Approximation Using B-mode Image Alignment with Steered Focused Transmits
Part of 2025 IEEE International Ultrasonics Symposium (IUS), p. 1-4, 2025
-
FGGP: Fixed-Rate Gradient-First Gradual Pruning
Part of Image Analysis, p. 3-15, 2025
-
Part of MEDICAL IMAGING 2025, 2025
-
Windowed Sound-Speed Prediction by Extending Beamforming-Based Global Estimators
Part of 2025 IEEE International Ultrasonics Symposium (IUS), p. 1-4, 2025
-
Global Tissue Speed-of-Sound via Comparative and Absolute Image Metrics in Ultrasound
2025
-
Image-based tissue characterization with sound speed
2025
-
Part of Pattern Recognition, p. 408-421, 2024
-
Model-Based Speed-of-Sound Reconstruction via Interpretable Pruned Priors
Part of 2024 IEEE Ultrasonics, Ferroelectrics, and Frequency Control Joint Symposium (UFFC-JS), 2024
-
Assessing Image Quality Metrics for Global Sound-Speed Estimation in Ultrasound
2024
-
Comparative Study of Image Quality Metrics for Global Sound-Speed Estimation
2024
-
Part of Detection of Extremely Sparse Key Instances in Whole Slide Cytology Images via Self-supervised One-class Representation Learning, p. 408-421, 2024
-
Speed-of-Sound as a Novel Tissue Characterization Method
2024
-
Speed-of-Sound as a Novel Quantitative Imaging and Characterization Method
2024
-
Model-based Deep Learning of Ultrasound Beamforming
2023
-
Speed-of-sound as a Novel Ultrasound Imaging Biomarker for Breast Cancer and Density
2023
-
2023
-
2023
-
2023
-
Global Speed-of-Sound Prediction Using Transmission Geometry
Part of Proceedings of the 2022 IEEE International Ultrasonics Symposium (IUS), p. 1-4, 2022
-
Mean Speed-of-Sound Estimation Using Geometric Disparities
2022
-
A unified deep learning approach for OCT segmentation from different devices and retinal diseases
Part of Investigative Ophthalmology & Visual Science, p. 2053, 2022
-
Differentiable Zooming for Multiple Instance Learning on Whole-Slide Images
Part of COMPUTER VISION, ECCV 2022, PT XXI, p. 699-715, 2022
-
Unsupervised Domain Adaptation with Contrastive Learning for OCT Segmentation
Part of Medical Image Computing and Computer Assisted Intervention, MICCAI 2022, pt viii, p. 351-361, 2022
-
Time Of Arrival Delineation In Echo Traces For Reflection Ultrasound Tomography
p. 1342-1345, 2021
-
Estimating Mean Speed-of-Sound from Sequence-Dependent Geometric Disparities
2021
-
Learning Whole-Slide Segmentation from Inexact and Incomplete Labels Using Tissue Graphs
Part of Medical Image Computing and Computer Assisted Intervention, p. 636-646, 2021
-
Content-Preserving Unpaired Translation from Simulated to Realistic Ultrasound Images
Part of Medical Image Computing and Computer Assisted Intervention, p. 659-669, 2021
-
Quantifying Explainers of Graph Neural Networks in Computational Pathology
Part of 2021 IEEE/CVF Conference on Computer Vision and Pattern Recognition, CVPR 2021, p. 8102-8112, 2021
-
2021
-
Estimating Mean Speed-of-Sound from Sequence-Dependent Geometric Disparities
Part of INTERNATIONAL ULTRASONICS SYMPOSIUM (IEEE IUS 2021), 2021
Manuscripts (preprints)
-
-
Match What Matters: Generative Implicit Feature Replay for Continual Learning
-
Unpaired Translation from Semantic Label Maps to Images by Leveraging Domain-Specific Simulations
-
DenOiS: Dual-Domain Denoising of Observation and Solution in Ultrasound Image Reconstruction
-
Pulse-Echo Ultrasound Methods for Speed-of-Sound Estimation: A Review
-