Orcun Göksel
Professor at Department of Information Technology; Vi3; Image Analysis
- Telephone:
- +46 18 471 34 60
- E-mail:
- orcun.goksel@it.uu.se
- Visiting address:
- Hus 10, Regementsvägen 10
- Postal address:
- Box 337
751 05 UPPSALA
- Academic merits:
- Docent
- ORCID:
- 0000-0002-8639-7373
Short presentation
I am leading the Computer-assisted Applications in Medicine research (CAiM) group.
Here is a visual summary of my research interests.
For further information, please see my webpage at http://goksel.org/
A complete list of publications is available on my website above or on my Google scholar page,
For potential master's thesis projects, please contact by email.
Biography
Dr. Goksel received two BSc degrees in electrical engineering (2001) and in computer engineering/science (2002) from Middle East Technical University, Ankara, Turkey. He received his MASc (2004) and PhD (2009) degrees in the Department of Electrical and Computer Engineering at the University of British Columbia, Vancouver, Canada. Since 2014 he has been an assistant professor at the Department of Information Technology and Electrical Engineering at ETH Zurich, Switzerland. He founded and has been leading the Computer-assisted Applications in Medicine (CAiM) group within the institute Computer Vision Lab. In 2020, he joined the Department of Information Technology at Uppsala University, Sweden, as an associate professor, where he is affiliated with the Centre for Image Analysis as well as the Medtech Science and Innovation Centre.
Dr. Goksel has received the 2016 ETH Spark Award (for most promising invention of the year), the 2014 CTI Swiss MedTech Award, and the 2011 WAGS Innovation in Technology Award (for best dissertation in western North America). He supervised several master's and PhD students as well as postdoctoral fellows.
Research
Computer-assisted Applications in Medicine (CAiM) Group, led by Orcun Göksel, is part of the newly-established Medtech Innovation and Science Centre as well as of the Centre for Image Analysis. CAiM is within the administrative Division of Visual Information and Interaction at the Department of Information Technology of Uppsala University in Sweden.
Basic and applied research in CAiM involve data analysis and information extraction, on topics lying at the intersection of multiple disciplines: computer science, engineering, and medicine. With the involvement of diverse and cross-disciplinary skill-set, the group aims to devise novel imaging and image analysis techniques, and develop them for clinical translation. The group’s efforts push the boundaries of diagnostic and surgical procedures as well as minimally-invasive interventions.
Research in CAiM is conducted in close collaboration with clinical as well as industrial partners, where the research results have a strong translational component, both clinically and commercially. To that end, CAiM aims to develop innovative diagnostic and interventional applications, focusing on data analysis from imaging to abstracting patient-specific models and representations, and from there to optimal intervention planning and intra-operative execution.

Publications
Recent publications
Windowed Sound-Speed Prediction by Extending Beamforming-Based Global Estimators
Part of 2025 IEEE International Ultrasonics Symposium (IUS), 2025
Sound Speed Approximation Using B-mode Image Alignment with Steered Focused Transmits
Part of 2025 IEEE International Ultrasonics Symposium (IUS), 2025
Learning the Imaging Model of Speed-of-Sound Reconstruction via a Convolutional Formulation
Part of IEEE Transactions on Medical Imaging, p. 3600-3609, 2025
Global Tissue Speed-of-Sound via Comparative and Absolute Image Metrics in Ultrasound
2025
Part of International Journal of Computer Assisted Radiology and Surgery, p. 1541-1549, 2025
- DOI for Uncertainty estimation for trust attribution to speed-of-sound reconstruction with variational networks
- Download full text (pdf) of Uncertainty estimation for trust attribution to speed-of-sound reconstruction with variational networks
All publications
Articles in journal
Learning the Imaging Model of Speed-of-Sound Reconstruction via a Convolutional Formulation
Part of IEEE Transactions on Medical Imaging, p. 3600-3609, 2025
Part of International Journal of Computer Assisted Radiology and Surgery, p. 1541-1549, 2025
- DOI for Uncertainty estimation for trust attribution to speed-of-sound reconstruction with variational networks
- Download full text (pdf) of Uncertainty estimation for trust attribution to speed-of-sound reconstruction with variational networks
Part of European Radiology, p. 1490-1501, 2025
- DOI for Breast density assessment via quantitative sound-speed measurement using conventional ultrasound transducers
- Download full text (pdf) of Breast density assessment via quantitative sound-speed measurement using conventional ultrasound transducers
Part of Medical Image Analysis, 2025
Multi-scale Feature Alignment for Continual Learning of Unlabeled Domains
Part of IEEE Transactions on Medical Imaging, p. 2599-2609, 2024
- DOI for Multi-scale Feature Alignment for Continual Learning of Unlabeled Domains
- Download full text (pdf) of Multi-scale Feature Alignment for Continual Learning of Unlabeled Domains
Generative feature-driven image replay for continual learning
Part of Image and Vision Computing, 2024
HDRfeat: A feature-rich network for high dynamic range image reconstruction
Part of Pattern Recognition Letters, p. 148-154, 2024
Part of Journal of Investigative Dermatology, p. 2103-210700, 2024
- DOI for Calpain Inhibition Protects against UVB-Induced Degradation of Dermal-Epidermal Junction-Associated Proteins
- Download full text (pdf) of Calpain Inhibition Protects against UVB-Induced Degradation of Dermal-Epidermal Junction-Associated Proteins
Part of Nature Communications, 2024
- DOI for Longevity interventions modulate mechanotransduction and extracellular matrix homeostasis in C. elegans
- Download full text (pdf) of Longevity interventions modulate mechanotransduction and extracellular matrix homeostasis in C. elegans
Robust Imaging of Speed-of-Sound Using Virtual Source Transmission
Part of IEEE Transactions on Ultrasonics, Ferroelectrics and Frequency Control, p. 1308-1318, 2023
Weakly supervised joint whole-slide segmentation and classification in prostate cancer
Part of Medical Image Analysis, 2023
Analytical Estimation of Beamforming Speed-of-Sound Using Transmission Geometry
Part of Ultrasonics, 2023
- DOI for Analytical Estimation of Beamforming Speed-of-Sound Using Transmission Geometry
- Download full text (pdf) of Analytical Estimation of Beamforming Speed-of-Sound Using Transmission Geometry
Generative appearance replay for continual unsupervised domain adaptation
Part of Medical Image Analysis, p. 102924-102924, 2023
- DOI for Generative appearance replay for continual unsupervised domain adaptation
- Download full text (pdf) of Generative appearance replay for continual unsupervised domain adaptation
Computational analysis of subscapularis tears and pectoralis major transfers on muscular activity
Part of Clinical Biomechanics, 2022
- DOI for Computational analysis of subscapularis tears and pectoralis major transfers on muscular activity
- Download full text (pdf) of Computational analysis of subscapularis tears and pectoralis major transfers on muscular activity
Hierarchical graph representations in digital pathology
Part of Medical Image Analysis, 2022
- DOI for Hierarchical graph representations in digital pathology
- Download full text (pdf) of Hierarchical graph representations in digital pathology
Spectral Ultrasound Imaging of Speed-of-Sound and Attenuation Using an Acoustic Mirror
Part of Frontiers in Physics, 2022
- DOI for Spectral Ultrasound Imaging of Speed-of-Sound and Attenuation Using an Acoustic Mirror
- Download full text (pdf) of Spectral Ultrasound Imaging of Speed-of-Sound and Attenuation Using an Acoustic Mirror
Part of Science Advances, 2022
Learning ultrasound rendering from cross-sectional model slices for simulated training
Part of International Journal of Computer Assisted Radiology and Surgery, p. 721-730, 2021
- DOI for Learning ultrasound rendering from cross-sectional model slices for simulated training
- Download full text (pdf) of Learning ultrasound rendering from cross-sectional model slices for simulated training
Part of Nature Machine Intelligence, p. 799-811, 2021
Part of Frontiers in Physics, 2021
- DOI for Phase-Aberration Correction in Shear-Wave Elastography Imaging Using Local Speed-of-Sound Adaptive Beamforming
- Download full text (pdf) of Phase-Aberration Correction in Shear-Wave Elastography Imaging Using Local Speed-of-Sound Adaptive Beamforming
Part of International Journal of Computer Assisted Radiology and Surgery, p. 707-708, 2021
- DOI for IJCARS-IPCAI 2021 Special Issue: Information Processing for Computer-Assisted Interventions, 12th International Conference 2021-Part 1
- Download full text (pdf) of IJCARS-IPCAI 2021 Special Issue: Information Processing for Computer-Assisted Interventions, 12th International Conference 2021-Part 1
Conference papers
Windowed Sound-Speed Prediction by Extending Beamforming-Based Global Estimators
Part of 2025 IEEE International Ultrasonics Symposium (IUS), 2025
Sound Speed Approximation Using B-mode Image Alignment with Steered Focused Transmits
Part of 2025 IEEE International Ultrasonics Symposium (IUS), 2025
Global Tissue Speed-of-Sound via Comparative and Absolute Image Metrics in Ultrasound
2025
Part of MEDICAL IMAGING 2025, 2025
Image-based tissue characterization with sound speed
2025
FGGP: Fixed-Rate Gradient-First Gradual Pruning
Part of Image Analysis, p. 3-15, 2025
Model-Based Speed-of-Sound Reconstruction via Interpretable Pruned Priors
Part of 2024 IEEE Ultrasonics, Ferroelectrics, and Frequency Control Joint Symposium (UFFC-JS), 2024
Comparative Study of Image Quality Metrics for Global Sound-Speed Estimation
2024
Assessing Image Quality Metrics for Global Sound-Speed Estimation in Ultrasound
2024
Part of Pattern Recognition, p. 408-421, 2024
Part of Detection of Extremely Sparse Key Instances in Whole Slide Cytology Images via Self-supervised One-class Representation Learning, p. 408-421, 2024
Speed-of-Sound as a Novel Tissue Characterization Method
2024
Speed-of-Sound as a Novel Quantitative Imaging and Characterization Method
2024
2023
2023
2023
Model-based Deep Learning of Ultrasound Beamforming
2023
Speed-of-sound as a Novel Ultrasound Imaging Biomarker for Breast Cancer and Density
2023
A unified deep learning approach for OCT segmentation from different devices and retinal diseases
Part of Investigative Ophthalmology & Visual Science, p. 2053, 2022
Global Speed-of-Sound Prediction Using Transmission Geometry
Part of Proceedings of the 2022 IEEE International Ultrasonics Symposium (IUS), p. 1-4, 2022
Mean Speed-of-Sound Estimation Using Geometric Disparities
2022
Differentiable Zooming for Multiple Instance Learning on Whole-Slide Images
Part of COMPUTER VISION, ECCV 2022, PT XXI, p. 699-715, 2022
Unsupervised Domain Adaptation with Contrastive Learning for OCT Segmentation
Part of Medical Image Computing and Computer Assisted Intervention, MICCAI 2022, pt viii, p. 351-361, 2022
Time Of Arrival Delineation In Echo Traces For Reflection Ultrasound Tomography
p. 1342-1345, 2021
Estimating Mean Speed-of-Sound from Sequence-Dependent Geometric Disparities
2021
Learning Whole-Slide Segmentation from Inexact and Incomplete Labels Using Tissue Graphs
Part of Medical Image Computing and Computer Assisted Intervention, p. 636-646, 2021
Content-Preserving Unpaired Translation from Simulated to Realistic Ultrasound Images
Part of Medical Image Computing and Computer Assisted Intervention, p. 659-669, 2021
Quantifying Explainers of Graph Neural Networks in Computational Pathology
Part of 2021 IEEE/CVF Conference on Computer Vision and Pattern Recognition, CVPR 2021, p. 8102-8112, 2021
2021
Estimating Mean Speed-of-Sound from Sequence-Dependent Geometric Disparities
Part of INTERNATIONAL ULTRASONICS SYMPOSIUM (IEEE IUS 2021), 2021