Publikationer

Sex estimation using long bones in the largest burial site of the Copper Age: Linear discriminant analysis and random forest

Díaz-Navarro, S.; Díez-Hermano, S.; Rojo-Guerra, M. A.; Maurandi, J. Lomba et al.

Ingår i Journal of Archaeological Science, 2024

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• DOI för Sex estimation using long bones in the largest burial site of the Copper Age: Linear discriminant analysis and random forest
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Investigating African population structure using genomes and proteomes

Lankheet, Imke Tara

2024

Doktorsavhandling, sammanläggning

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Maternal histories of sub-Saharan Africa revealed through sequencing of complete mitochondrial genomes

Lankheet, Imke; Chowdhury, Afifa; Tellgren-Roth, Christian; Jolly, Cécile et al.

Manuskript (preprint)

Ancient proteins and the deepest population divergence among modern human populations

Lankheet, Imke; Oskolkov, Nikolay; Mirabello, Claudio; Mtetwa, Ezekia et al.

Manuskript (preprint)

Y chromosome diversity and geographical patterns in sub-Saharan Africa

Lankheet, Imke; Chowdhury, Afifa; Jolly, Cécile; Green, Susanne T. et al.

Manuskript (preprint)

READv2: advanced and user-friendly detection of biological relatedness in archaeogenomics

Alacamli, Erkin; Naidoo, Thijessen; Guler, Merve N.; Saglican, Ekin et al.

Ingår i Genome Biology, 2024

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• DOI för READv2: advanced and user-friendly detection of biological relatedness in archaeogenomics
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Human genetic structure in Northwest France provides new insights into West European historical demography

Alves, Isabel; Giemza, Joanna; Blum, Michael G. B.; Bernhardsson, Carolina et al.

Ingår i Nature Communications, 2024

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• DOI för Human genetic structure in Northwest France provides new insights into West European historical demography
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Population Genomic History of the Endangered Anatolian and Cyprian Mouflons in Relation to Worldwide Wild, Feral, and Domestic Sheep Lineages

Atag, Gözde; Kaptan, Damla; Yüncü, Eren; Vural, Kivilcim Basak et al.

Ingår i Genome Biology and Evolution, 2024

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• DOI för Population Genomic History of the Endangered Anatolian and Cyprian Mouflons in Relation to Worldwide Wild, Feral, and Domestic Sheep Lineages
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Whole-genome resequencing facilitates the development of a 50K single nucleotide polymorphism genotyping array for Scots pine (Pinus sylvestris L.) and its transferability to other pine species

Barcala, Maximiliano Estravis; van der Valk, Tom; Chen, Zhiqiang; Funda, Tomas et al.

Ingår i The Plant Journal, s. 944-955, 2024

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• DOI för Whole-genome resequencing facilitates the development of a 50K single nucleotide polymorphism genotyping array for Scots pine (Pinus sylvestris L.) and its transferability to other pine species
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Germline mutation rate is elevated in young and old parents in Caenorhabditis remanei

Chen, Hwei-yen; Krieg, Therese; Mautz, Brian; Jolly, Cecile et al.

Ingår i Evolution Letters, s. 478-489, 2023

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• DOI för Germline mutation rate is elevated in young and old parents in Caenorhabditis remanei
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The genetic changes that shaped Neandertals, Denisovans, and modern humans

Zeberg, Hugo; Jakobsson, Mattias; Paabo, Svante

Ingår i Cell, s. 1047-1058, 2024

Artikel, forskningsöversikt

• DOI för The genetic changes that shaped Neandertals, Denisovans, and modern humans

Identification of microbial pathogens in Neolithic Scandinavian humans

Bergfeldt, Nora; Kirdök, Emrah; Oskolkov, Nikolay; Mirabello, Claudio et al.

Ingår i Scientific Reports, 2024

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• DOI för Identification of microbial pathogens in Neolithic Scandinavian humans
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Strong Purifying Selection in Haploid Tissue-Specific Genes of Scots Pine Supports the Masking Theory

Cervantes, Sandra; Kesalähti, Robert; Kumpula, Timo A.; Mattila, Tiina M. et al.

Ingår i Molecular biology and evolution, 2023

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• DOI för Strong Purifying Selection in Haploid Tissue-Specific Genes of Scots Pine Supports the Masking Theory
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Eurasian back-migration into Northeast Africa was a complex and multifaceted process

Hammarén, Rickard; Goldstein, Steven T.; Schlebusch, Carina

Ingår i PLOS ONE, 2023

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• DOI för Eurasian back-migration into Northeast Africa was a complex and multifaceted process
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The genetic legacy of the expansion of Bantu-speaking peoples in Africa

Fortes-Lima, Cesar A.; Burgarella, Concetta; Hammarén, Rickard; Eriksson, Anders et al.

Ingår i Nature, s. 540-547, 2024

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• DOI för The genetic legacy of the expansion of Bantu-speaking peoples in Africa
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Transformation of the Scandinavian hunter-fisher-gatherer population throughout the Mesolithic

Kashuba, Natalija; Bernhardsson, Carolina; Boethius, Adam; Fraser, Magdalena et al.

Manuskript (preprint)

Metagenomic analysis of Mesolithic chewed pitch reveals poor oral health among stone age individuals

Kirdök, Emrah; Kashuba, Natalija; Damlien, Hege; Manninen, Mikael A. et al.

Ingår i Scientific Reports, 2024

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• DOI för Metagenomic analysis of Mesolithic chewed pitch reveals poor oral health among stone age individuals
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Going local with ancient DNA: A review of human histories from regional perspectives

Avila-Arcos, Maria C.; Raghavan, Maanasa; Schlebusch, Carina

Ingår i Science, s. 53-58, 2023

Artikel, forskningsöversikt

• DOI för Going local with ancient DNA: A review of human histories from regional perspectives

Polymorphic parasitic larvae cooperate to build swimming colonies luring hosts

Krupenko, Darya; Miroliubov, Aleksei; Kryukov, Emil; Faure, Louis et al.

Ingår i Current Biology, s. 4524-4531, 2023

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• DOI för Polymorphic parasitic larvae cooperate to build swimming colonies luring hosts
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The ancestry and geographical origins of St Helena's liberated Africans

Sandoval-Velasco, Marcela; Jagadeesan, Anuradha; Ramos-Madrigal, Jazmin; Avila-Arcos, Maria C. et al.

Ingår i American Journal of Human Genetics, s. 1590-1599, 2023

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• DOI för The ancestry and geographical origins of St Helena's liberated Africans
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Ancient Sheep Genomes reveal four Millennia of North European Short-Tailed Sheep in the Baltic Sea region

Larsson, Martin N. A.; Morell Miranda, Pedro; Pan, Li; Başak Vural, Kıvılcım et al.

Ingår i Genome Biology and Evolution, 2024

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• DOI för Ancient Sheep Genomes reveal four Millennia of North European Short-Tailed Sheep in the Baltic Sea region
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Following the herd: Population genetics of European sheep in time and space

Morell Miranda, Pedro

2023

Doktorsavhandling, sammanläggning

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Demographic reconstruction of the Western sheep expansion from whole-genome sequences

Morell Miranda, Pedro; Soares, André E. R.; Günther, Torsten

Ingår i G3, 2023

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• DOI för Demographic reconstruction of the Western sheep expansion from whole-genome sequences
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Ancient genomes reveal 7000 years of interconnected Demographic History between Sheep and Humans in Iberia.

Morell Miranda, Pedro; Galindo-Pellicena, Maria Ángeles; Mereu, Paolo; Iriarte, Eneko et al.

Manuskript (preprint)

Matrilineal phylogeography of wild and feral sheep from the Mediterranean and the Middle East

Mereu, Paolo; Pirastru, Monica; Morell Miranda, Pedro; Atag, Gözde et al.

Manuskript (preprint)

Epigenomic Modifications in Modern and Ancient Genomes

Niiranen, Laura; Leciej, Dawid; Edlund, Hanna; Bernhardsson, Carolina et al.

Ingår i Genes, 2022

Artikel, forskningsöversikt

• DOI för Epigenomic Modifications in Modern and Ancient Genomes
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Iron age genomic data from Althiburos - Tunisia renew the debate on the origins of African taurine cattle

Ginja, Catarina; Guimaraes, Silvia; da Fonseca, Rute R.; Rasteiro, Rita et al.

Ingår i iScience, 2023

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• DOI för Iron age genomic data from Althiburos - Tunisia renew the debate on the origins of African taurine cattle
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Patrilocality and hunter-gatherer-related ancestry of populations in East-Central Europe during the Middle Bronze Age

Chylenski, Maciej; Makarowicz, Przemyslaw; Juras, Anna; Krzewinska, Maja et al.

Ingår i Nature Communications, 2023

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• DOI för Patrilocality and hunter-gatherer-related ancestry of populations in East-Central Europe during the Middle Bronze Age
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Genetic continuity, isolation, and gene flow in Stone Age Central and Eastern Europe

Mattila, Tiina M.; Svensson, Emma M.; Juras, Anna; Günther, Torsten et al.

Ingår i Communications Biology, 2023

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• DOI för Genetic continuity, isolation, and gene flow in Stone Age Central and Eastern Europe
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Places of shared narratives: The Mesolithic burial grounds in the Tagus and Sado valleys, Portugal

Peyroteo Stjerna, Rita

Ingår i Stones, s. 100-107, Uppsala University, 2023

Kapitel i bok, del av antologi

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Demographic history and genetic structure in pre-Hispanic Central Mexico

Villa-Islas, Viridiana; Izarraras-Gomez, Alan; Larena, Maximilian; Perez Campos, Elizabeth Mejia et al.

Ingår i Science, 2023

Artikel i tidskrift

• DOI för Demographic history and genetic structure in pre-Hispanic Central Mexico

Genetic structure and characteristics of Tibetan chickens

Li, Shijun; Zhang, Xiaojian; Dong, Xinyu; Guo, Ruiyang et al.

Ingår i Poultry Science, 2023

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• DOI för Genetic structure and characteristics of Tibetan chickens
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Northwest African Neolithic initiated by migrants from Iberia and Levant

Simões, Luciana G.; Günther, Torsten; Martínez-Sánchez, Rafael M.; Vera-Rodríguez, Juan Carlos et al.

Ingår i Nature, s. 550-556, 2023

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• DOI för Northwest African Neolithic initiated by migrants from Iberia and Levant
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African Farmers, Not Stone Age Foragers: Reassessment of Human Remains from the Mumbwa Caves, Zambia

Steyn, Maryna; Meyer, Anja; Peyroteo-Stjerna, Rita; Jolly, Cecile et al.

Ingår i African Archaeological Review, s. 53-72, 2023

Artikel i tidskrift

• DOI för African Farmers, Not Stone Age Foragers: Reassessment of Human Remains from the Mumbwa Caves, Zambia

Interdisciplinary analyses of the remains from three gallery graves at Kinnekulle: tracing Late Neolithic and Early Bronze Age societies in inland Southwestern Sweden

Blank, Malou; Tornberg, Anna; Sjögren, Karl-Göran; Knipper, Corina et al.

Ingår i Archaeological and Anthropological Sciences, 2023

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• DOI för Interdisciplinary analyses of the remains from three gallery graves at Kinnekulle: tracing Late Neolithic and Early Bronze Age societies in inland Southwestern Sweden
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Imputed genomes and haplotype-based analyses of the Picts of early medieval Scotland reveal fine-scale relatedness between Iron Age, early medieval and the modern people of the UK

Morez, Adeline; Britton, Kate; Noble, Gordon; Günther, Torsten et al.

Ingår i PLOS Genetics, 2023

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• DOI för Imputed genomes and haplotype-based analyses of the Picts of early medieval Scotland reveal fine-scale relatedness between Iron Age, early medieval and the modern people of the UK
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A Population Genetic Perspective on Subsistence Systems in the Sahel/Savannah Belt of Africa and the Historical Role of Pastoralism

Cerny, Viktor; Priehodová, Edita; Fortes-Lima, Cesar

Ingår i Genes, 2023

Artikel, forskningsöversikt

• DOI för A Population Genetic Perspective on Subsistence Systems in the Sahel/Savannah Belt of Africa and the Historical Role of Pastoralism
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Rickettsia felis DNA recovered from a child who lived in southern Africa 2000 years ago

Rifkin, Riaan F. F.; Vikram, Surendra; Alcorta, Jaime; Ramond, Jean-Baptiste et al.

Ingår i Communications Biology, 2023

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• DOI för Rickettsia felis DNA recovered from a child who lived in southern Africa 2000 years ago
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The population genomic legacy of the second plague pandemic

Gopalakrishnan, Shyam; Ebenesersdottir, S. Sunna; Lundström, Inge K. C.; Turner-Walker, Gordon et al.

Ingår i Current Biology, s. 4743-4751000000, 2022

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• DOI för The population genomic legacy of the second plague pandemic
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The loss of biodiversity in Madagascar is contemporaneous with major demographic events

Alva, Omar; Leroy, Anais; Heiske, Margit; Pereda-Loth, Veronica et al.

Ingår i Current Biology, s. 4997-+, 2022

Artikel i tidskrift

• DOI för The loss of biodiversity in Madagascar is contemporaneous with major demographic events

Uncovering the Past through ancient DNA: The Fate and Legacy of the last hunter-gatherers in Western Europe and Northwestern Africa

Simões, Luciana G.

2023

Doktorsavhandling, sammanläggning

• Ladda ner fulltext (pdf) av Uncovering the Past through ancient DNA: The Fate and Legacy of the last hunter-gatherers in Western Europe and Northwestern Africa

Genomic ancestry and social dynamics of the last hunter-gatherers of Atlantic France

Simões, Luciana G.; Peyroteo Stjerna, Rita; Marchand, Grégor; Bernhardsson, Carolina et al.

Ingår i Proceedings of the National Academy of Sciences of the United States of America, 2024

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• DOI för Genomic ancestry and social dynamics of the last hunter-gatherers of Atlantic France
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The genomic history of the Iberian hunter-gatherers, from the Late Pleistocene to the Early Holocene

Peyroteo Stjerna, Rita; Simões, Luciana G.; Araújo, Ana Cristina; Diniz, Mariana et al.

Manuskript (preprint)

Who were the Mesolithic people: the archaeogenomic perspective

Simões, Luciana G.; Günther, Torsten

Manuskript (preprint)

The genetic history of Scandinavia from the Roman Iron Age to the present

Rodríguez-Varela, Ricardo; Moore, Kristjan H.S.; Ebenesersdóttir, S. Sunna; Kilinc, Gulsah Merve et al.

Ingår i Cell, s. 32-460000000000000000000, 2023

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• DOI för The genetic history of Scandinavia from the Roman Iron Age to the present
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Divergence, admixture and continuity in the human past: Demographic inference using ancient and modern genomes

McKenna, James

2022

Doktorsavhandling, sammanläggning

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Detecting population continuity and ghost admixture among ancient genomes

McKenna, James; Bernhardsson, Carolina; Waxman, David; Jakobsson, Mattias et al.

Ingår i biorxiv, 2022

Artikel i tidskrift

Ten thousand years of ancient genomes show long-term isolation of Stone Age southern Africans

McKenna, James; Hollfelder, Nina; Vicente, Mmario; Edlund, Hanna et al.

Manuskript (preprint)

Demographic and Selection Histories of Populations Across the Sahel/Savannah Belt

Fortes-Lima, Cesar A.; Triska, Petr; Cizkova, Martina; Podgorna, Eliska et al.

Ingår i Molecular biology and evolution, 2022

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• DOI för Demographic and Selection Histories of Populations Across the Sahel/Savannah Belt
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Taming the massive genome of Scots pine with PiSy50k, a new genotyping array for conifer research

Kastally, Chedly; Niskanen, Alina K.; Perry, Annika; Kujala, Sonja T. et al.

Ingår i The Plant Journal, s. 1337-1350, 2022

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• DOI för Taming the massive genome of Scots pine with PiSy50k, a new genotyping array for conifer research
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