Publikationer

The genomic legacy of aurochs hybridisation in ancient and modern Iberian cattle

Günther, Torsten; Chisausky, Jacob; Galindo-Pellicena, Ángeles M.; Iriarte, Eneko et al.

Ingår i eLIFE, 2025

Artikel i tidskrift

• DOI för The genomic legacy of aurochs hybridisation in ancient and modern Iberian cattle
• Ladda ner fulltext (pdf) av The genomic legacy of aurochs hybridisation in ancient and modern Iberian cattle

Analysis of the abundance of radiocarbon samples as count data

de Navascues, Miguel; Burgarella, Concetta; Jakobsson, Mattias

Ingår i Peer Community Journal, 2025

Artikel i tidskrift

• DOI för Analysis of the abundance of radiocarbon samples as count data
• Ladda ner fulltext (pdf) av Analysis of the abundance of radiocarbon samples as count data

Population history and admixture of the Fulani people from the Sahel

Fortes-Lima, Cesar A.; Diallo, Mame Y.; Janousek, Vaclav; Cemy, Viktor et al.

Ingår i American Journal of Human Genetics, s. 261-275, 2025

Artikel i tidskrift

• DOI för Population history and admixture of the Fulani people from the Sahel
• Ladda ner fulltext (pdf) av Population history and admixture of the Fulani people from the Sahel

Natural selection and adaptive traits in the Maniq, a nomadic hunter-gatherer society from Mainland Southeast Asia

Herzog, Tobias; Larena, Maximilian; Kutanan, Wibhu; Lukas, Helmut et al.

Ingår i Scientific Reports, 2025

Artikel i tidskrift

• DOI för Natural selection and adaptive traits in the Maniq, a nomadic hunter-gatherer society from Mainland Southeast Asia
• Ladda ner fulltext (pdf) av Natural selection and adaptive traits in the Maniq, a nomadic hunter-gatherer society from Mainland Southeast Asia

From the Treatment of the Body to the Places of the Dead

Tõrv, Mari; Peyroteo Stjerna, Rita

Ingår i Oxford Handbook of Mesolithic Europe, Oxford University Press, 2025

Kapitel i bok, del av antologi

Joint inference of adaptive and demographic history from temporal population genomic data

Pavinato, Vitor A. C.; De Mita, Stephane; Marin, Jean-Michel; de Navascues, Miguel

Ingår i Peer Community Journal, 2022

Artikel i tidskrift

• DOI för Joint inference of adaptive and demographic history from temporal population genomic data
• Ladda ner fulltext (pdf) av Joint inference of adaptive and demographic history from temporal population genomic data

Power and limits of selection genome scans on temporal data from a selfing population

de Navascués, Miguel; Becheler, Arnaud; Gay, Laurène; Ronfort, Joëlle et al.

Ingår i Peer Community Journal, 2021

Artikel i tidskrift

• DOI för Power and limits of selection genome scans on temporal data from a selfing population
• Ladda ner fulltext (pdf) av Power and limits of selection genome scans on temporal data from a selfing population

Repeated plague infections across six generations of Neolithic Farmers

Seersholm, Frederik Valeur; Sjögren, Karl-Göran; Koelman, Julia; Blank, Malou et al.

Ingår i Nature, s. 114-121, 2024

Artikel i tidskrift

• DOI för Repeated plague infections across six generations of Neolithic Farmers
• Ladda ner fulltext (pdf) av Repeated plague infections across six generations of Neolithic Farmers

DNA-analys av arkeologiska material

Fraser, Magdalena; Malmström, Helena; Svensson, Emma; Storå, Jan

Ingår i Arkeologi på Gotland 2, s. 43-52, Uppsala universitet, 2017

Kapitel i bok, del av antologi

• Ladda ner fulltext (pdf) av DNA-analys av arkeologiska material

A Tale of Two Lakes: Divergent Evolutionary Trajectories of Two Daphnia Populations Experiencing Distinct Environments

Wersebe, Matthew J.; Günther, Torsten; Morton, Philip K.; Weider, Lawrence J. et al.

Ingår i Ecology and Evolution, 2024

Artikel i tidskrift

• DOI för A Tale of Two Lakes: Divergent Evolutionary Trajectories of Two Daphnia Populations Experiencing Distinct Environments
• Ladda ner fulltext (pdf) av A Tale of Two Lakes: Divergent Evolutionary Trajectories of Two Daphnia Populations Experiencing Distinct Environments

Forensic autosomal and gonosomal short tandem repeat marker reference database for populations in Burkina Faso

Zeye, Moutanou Modeste Judes; Ouedraogo, Serge Yannick; Bado, Prosper; Zoure, Abdou Azaque et al.

Ingår i Scientific Reports, 2024

Artikel i tidskrift

• DOI för Forensic autosomal and gonosomal short tandem repeat marker reference database for populations in Burkina Faso
• Ladda ner fulltext (pdf) av Forensic autosomal and gonosomal short tandem repeat marker reference database for populations in Burkina Faso

Zuurberg (Eastern Cape, South Africa) revisited: human remains, dating and archaeological findings

Steyn, Maryna; Jolly, Cecile; Schlebusch, Carina; Meyer, Anja

Ingår i Azania, s. 294-314, 2024

Artikel i tidskrift

• DOI för Zuurberg (Eastern Cape, South Africa) revisited: human remains, dating and archaeological findings
• Ladda ner fulltext (pdf) av Zuurberg (Eastern Cape, South Africa) revisited: human remains, dating and archaeological findings

Ethical entanglements: human remains, museums and ethics in a European perspective

Nilsson Stutz, Liv; Peyroteo Stjerna, Rita; Tarlow, Sarah

Ingår i Antiquity, s. 1-6, 2024

Artikel i tidskrift

• DOI för Ethical entanglements: human remains, museums and ethics in a European perspective

The Population History of Domestic Sheep Revealed by Paleogenomes

Kaptan, Damla; Atag, Gözde; Vural, Kivilcim Basak; Morell Miranda, Pedro et al.

Ingår i Molecular biology and evolution, 2024

Artikel i tidskrift

• DOI för The Population History of Domestic Sheep Revealed by Paleogenomes
• Ladda ner fulltext (pdf) av The Population History of Domestic Sheep Revealed by Paleogenomes

The Oxford Handbook of Mesolithic Europe

Nilsson Stutz, Liv; Peyroteo Stjerna, Rita; Tõrv, Mari

Oxford University Press, 2025

Samlingsverk (redaktörskap)

BaTwa populations from Zambia retain ancestry of past hunter-gatherer groups

Breton, Gwenna; Barham, Lawrence; Mudenda, George; Soodyall, Himla et al.

Ingår i Nature Communications, 2024

Artikel i tidskrift

• DOI för BaTwa populations from Zambia retain ancestry of past hunter-gatherer groups
• Ladda ner fulltext (pdf) av BaTwa populations from Zambia retain ancestry of past hunter-gatherer groups

An Improved Chromosome-scale Genome Assembly and Population Genetics resource for Populus tremula

Robinson, Kathryn M.; Schiffthaler, Bastian; Liu, Hui; Rydman, Sara M. et al.

Ingår i Physiologia Plantarum, 2024

Artikel i tidskrift

• DOI för An Improved Chromosome-scale Genome Assembly and Population Genetics resource for Populus tremula
• Ladda ner fulltext (pdf) av An Improved Chromosome-scale Genome Assembly and Population Genetics resource for Populus tremula

Sex estimation using long bones in the largest burial site of the Copper Age: Linear discriminant analysis and random forest

Díaz-Navarro, S.; Díez-Hermano, S.; Rojo-Guerra, M. A.; Maurandi, J. Lomba et al.

Ingår i Journal of Archaeological Science, 2024

Artikel i tidskrift

• DOI för Sex estimation using long bones in the largest burial site of the Copper Age: Linear discriminant analysis and random forest
• Ladda ner fulltext (pdf) av Sex estimation using long bones in the largest burial site of the Copper Age: Linear discriminant analysis and random forest

Investigating African population structure using genomes and proteomes

Lankheet, Imke Tara

2024

Doktorsavhandling, sammanläggning

• Ladda ner fulltext (pdf) av Investigating African population structure using genomes and proteomes

Maternal histories of sub-Saharan Africa revealed through sequencing of complete mitochondrial genomes

Lankheet, Imke; Chowdhury, Afifa; Tellgren-Roth, Christian; Jolly, Cécile et al.

Manuskript (preprint)

Y chromosome diversity and geographical patterns in sub-Saharan Africa

Lankheet, Imke; Chowdhury, Afifa; Jolly, Cécile; Green, Susanne T. et al.

Manuskript (preprint)

Ancient proteins and the deepest population divergence among modern human populations

Lankheet, Imke; Oskolkov, Nikolay; Mirabello, Claudio; Mtetwa, Ezekia et al.

Manuskript (preprint)

READv2: advanced and user-friendly detection of biological relatedness in archaeogenomics

Alacamli, Erkin; Naidoo, Thijessen; Guler, Merve N.; Saglican, Ekin et al.

Ingår i Genome Biology, 2024

Artikel i tidskrift

• DOI för READv2: advanced and user-friendly detection of biological relatedness in archaeogenomics
• Ladda ner fulltext (pdf) av READv2: advanced and user-friendly detection of biological relatedness in archaeogenomics

Human genetic structure in Northwest France provides new insights into West European historical demography

Alves, Isabel; Giemza, Joanna; Blum, Michael G. B.; Bernhardsson, Carolina et al.

Ingår i Nature Communications, 2024

Artikel i tidskrift

• DOI för Human genetic structure in Northwest France provides new insights into West European historical demography
• Ladda ner fulltext (pdf) av Human genetic structure in Northwest France provides new insights into West European historical demography

Population Genomic History of the Endangered Anatolian and Cyprian Mouflons in Relation to Worldwide Wild, Feral, and Domestic Sheep Lineages

Atag, Gözde; Kaptan, Damla; Yüncü, Eren; Vural, Kivilcim Basak et al.

Ingår i Genome Biology and Evolution, 2024

Artikel i tidskrift

• DOI för Population Genomic History of the Endangered Anatolian and Cyprian Mouflons in Relation to Worldwide Wild, Feral, and Domestic Sheep Lineages
• Ladda ner fulltext (pdf) av Population Genomic History of the Endangered Anatolian and Cyprian Mouflons in Relation to Worldwide Wild, Feral, and Domestic Sheep Lineages

Whole-genome resequencing facilitates the development of a 50K single nucleotide polymorphism genotyping array for Scots pine (Pinus sylvestris L.) and its transferability to other pine species

Barcala, Maximiliano Estravis; van der Valk, Tom; Chen, Zhiqiang; Funda, Tomas et al.

Ingår i The Plant Journal, s. 944-955, 2024

Artikel i tidskrift

• DOI för Whole-genome resequencing facilitates the development of a 50K single nucleotide polymorphism genotyping array for Scots pine (Pinus sylvestris L.) and its transferability to other pine species
• Ladda ner fulltext (pdf) av Whole-genome resequencing facilitates the development of a 50K single nucleotide polymorphism genotyping array for Scots pine (Pinus sylvestris L.) and its transferability to other pine species

Germline mutation rate is elevated in young and old parents in Caenorhabditis remanei

Chen, Hwei-yen; Krieg, Therese; Mautz, Brian; Jolly, Cecile et al.

Ingår i Evolution Letters, s. 478-489, 2023

Artikel i tidskrift

• DOI för Germline mutation rate is elevated in young and old parents in Caenorhabditis remanei
• Ladda ner fulltext (pdf) av Germline mutation rate is elevated in young and old parents in Caenorhabditis remanei

The genetic changes that shaped Neandertals, Denisovans, and modern humans

Zeberg, Hugo; Jakobsson, Mattias; Paabo, Svante

Ingår i Cell, s. 1047-1058, 2024

Artikel, forskningsöversikt

• DOI för The genetic changes that shaped Neandertals, Denisovans, and modern humans

Identification of microbial pathogens in Neolithic Scandinavian humans

Bergfeldt, Nora; Kirdök, Emrah; Oskolkov, Nikolay; Mirabello, Claudio et al.

Ingår i Scientific Reports, 2024

Artikel i tidskrift

• DOI för Identification of microbial pathogens in Neolithic Scandinavian humans
• Ladda ner fulltext (pdf) av Identification of microbial pathogens in Neolithic Scandinavian humans

Strong Purifying Selection in Haploid Tissue-Specific Genes of Scots Pine Supports the Masking Theory

Cervantes, Sandra; Kesalähti, Robert; Kumpula, Timo A.; Mattila, Tiina M. et al.

Ingår i Molecular biology and evolution, 2023

Artikel i tidskrift

• DOI för Strong Purifying Selection in Haploid Tissue-Specific Genes of Scots Pine Supports the Masking Theory
• Ladda ner fulltext (pdf) av Strong Purifying Selection in Haploid Tissue-Specific Genes of Scots Pine Supports the Masking Theory

Eurasian back-migration into Northeast Africa was a complex and multifaceted process

Hammarén, Rickard; Goldstein, Steven T.; Schlebusch, Carina

Ingår i PLOS ONE, 2023

Artikel i tidskrift

• DOI för Eurasian back-migration into Northeast Africa was a complex and multifaceted process
• Ladda ner fulltext (pdf) av Eurasian back-migration into Northeast Africa was a complex and multifaceted process

The genetic legacy of the expansion of Bantu-speaking peoples in Africa

Fortes-Lima, Cesar A.; Burgarella, Concetta; Hammarén, Rickard; Eriksson, Anders et al.

Ingår i Nature, s. 540-547, 2024

Artikel i tidskrift

• DOI för The genetic legacy of the expansion of Bantu-speaking peoples in Africa
• Ladda ner fulltext (pdf) av The genetic legacy of the expansion of Bantu-speaking peoples in Africa

Transformation of the Scandinavian hunter-fisher-gatherer population throughout the Mesolithic

Kashuba, Natalija; Bernhardsson, Carolina; Boethius, Adam; Fraser, Magdalena et al.

Manuskript (preprint)

Metagenomic analysis of Mesolithic chewed pitch reveals poor oral health among stone age individuals

Kirdök, Emrah; Kashuba, Natalija; Damlien, Hege; Manninen, Mikael A. et al.

Ingår i Scientific Reports, 2024

Artikel i tidskrift

• DOI för Metagenomic analysis of Mesolithic chewed pitch reveals poor oral health among stone age individuals
• Ladda ner fulltext (pdf) av Metagenomic analysis of Mesolithic chewed pitch reveals poor oral health among stone age individuals

Going local with ancient DNA: A review of human histories from regional perspectives

Avila-Arcos, Maria C.; Raghavan, Maanasa; Schlebusch, Carina

Ingår i Science, s. 53-58, 2023

Artikel, forskningsöversikt

• DOI för Going local with ancient DNA: A review of human histories from regional perspectives

Polymorphic parasitic larvae cooperate to build swimming colonies luring hosts

Krupenko, Darya; Miroliubov, Aleksei; Kryukov, Emil; Faure, Louis et al.

Ingår i Current Biology, s. 4524-4531, 2023

Artikel i tidskrift

• DOI för Polymorphic parasitic larvae cooperate to build swimming colonies luring hosts
• Ladda ner fulltext (pdf) av Polymorphic parasitic larvae cooperate to build swimming colonies luring hosts

The ancestry and geographical origins of St Helena's liberated Africans

Sandoval-Velasco, Marcela; Jagadeesan, Anuradha; Ramos-Madrigal, Jazmin; Avila-Arcos, Maria C. et al.

Ingår i American Journal of Human Genetics, s. 1590-1599, 2023

Artikel i tidskrift

• DOI för The ancestry and geographical origins of St Helena's liberated Africans
• Ladda ner fulltext (pdf) av The ancestry and geographical origins of St Helena's liberated Africans

Ancient Sheep Genomes reveal four Millennia of North European Short-Tailed Sheep in the Baltic Sea region

Larsson, Martin N. A.; Morell Miranda, Pedro; Pan, Li; Başak Vural, Kıvılcım et al.

Ingår i Genome Biology and Evolution, 2024

Artikel i tidskrift

• DOI för Ancient Sheep Genomes reveal four Millennia of North European Short-Tailed Sheep in the Baltic Sea region
• Ladda ner fulltext (pdf) av Ancient Sheep Genomes reveal four Millennia of North European Short-Tailed Sheep in the Baltic Sea region

Demographic reconstruction of the Western sheep expansion from whole-genome sequences

Morell Miranda, Pedro; Soares, André E. R.; Günther, Torsten

Ingår i G3, 2023

Artikel i tidskrift

• DOI för Demographic reconstruction of the Western sheep expansion from whole-genome sequences
• Ladda ner fulltext (pdf) av Demographic reconstruction of the Western sheep expansion from whole-genome sequences

Following the herd: Population genetics of European sheep in time and space

Morell Miranda, Pedro

2023

Doktorsavhandling, sammanläggning

• Ladda ner fulltext (pdf) av Following the herd: Population genetics of European sheep in time and space

Ancient genomes reveal 7000 years of interconnected Demographic History between Sheep and Humans in Iberia.

Morell Miranda, Pedro; Galindo-Pellicena, Maria Ángeles; Mereu, Paolo; Iriarte, Eneko et al.

Manuskript (preprint)

Matrilineal phylogeography of wild and feral sheep from the Mediterranean and the Middle East

Mereu, Paolo; Pirastru, Monica; Morell Miranda, Pedro; Atag, Gözde et al.

Manuskript (preprint)

Epigenomic Modifications in Modern and Ancient Genomes

Niiranen, Laura; Leciej, Dawid; Edlund, Hanna; Bernhardsson, Carolina et al.

Ingår i Genes, 2022

Artikel, forskningsöversikt

• DOI för Epigenomic Modifications in Modern and Ancient Genomes
• Ladda ner fulltext (pdf) av Epigenomic Modifications in Modern and Ancient Genomes

Iron age genomic data from Althiburos - Tunisia renew the debate on the origins of African taurine cattle

Ginja, Catarina; Guimaraes, Silvia; da Fonseca, Rute R.; Rasteiro, Rita et al.

Ingår i iScience, 2023

Artikel i tidskrift

• DOI för Iron age genomic data from Althiburos - Tunisia renew the debate on the origins of African taurine cattle
• Ladda ner fulltext (pdf) av Iron age genomic data from Althiburos - Tunisia renew the debate on the origins of African taurine cattle

Patrilocality and hunter-gatherer-related ancestry of populations in East-Central Europe during the Middle Bronze Age

Chylenski, Maciej; Makarowicz, Przemyslaw; Juras, Anna; Krzewinska, Maja et al.

Ingår i Nature Communications, 2023

Artikel i tidskrift

• DOI för Patrilocality and hunter-gatherer-related ancestry of populations in East-Central Europe during the Middle Bronze Age
• Ladda ner fulltext (pdf) av Patrilocality and hunter-gatherer-related ancestry of populations in East-Central Europe during the Middle Bronze Age

Genetic continuity, isolation, and gene flow in Stone Age Central and Eastern Europe

Mattila, Tiina M.; Svensson, Emma M.; Juras, Anna; Günther, Torsten et al.

Ingår i Communications Biology, 2023

Artikel i tidskrift

• DOI för Genetic continuity, isolation, and gene flow in Stone Age Central and Eastern Europe
• Ladda ner fulltext (pdf) av Genetic continuity, isolation, and gene flow in Stone Age Central and Eastern Europe

Places of shared narratives: The Mesolithic burial grounds in the Tagus and Sado valleys, Portugal

Peyroteo Stjerna, Rita

Ingår i Stones, s. 100-107, Uppsala University, 2023

Kapitel i bok, del av antologi

• Ladda ner fulltext (pdf) av Places of shared narratives: The Mesolithic burial grounds in the Tagus and Sado valleys, Portugal

Demographic history and genetic structure in pre-Hispanic Central Mexico

Villa-Islas, Viridiana; Izarraras-Gomez, Alan; Larena, Maximilian; Perez Campos, Elizabeth Mejia et al.

Ingår i Science, 2023

Artikel i tidskrift

• DOI för Demographic history and genetic structure in pre-Hispanic Central Mexico

Genetic structure and characteristics of Tibetan chickens

Li, Shijun; Zhang, Xiaojian; Dong, Xinyu; Guo, Ruiyang et al.

Ingår i Poultry Science, 2023

Artikel i tidskrift

• DOI för Genetic structure and characteristics of Tibetan chickens
• Ladda ner fulltext (pdf) av Genetic structure and characteristics of Tibetan chickens

Northwest African Neolithic initiated by migrants from Iberia and Levant

Simões, Luciana G.; Günther, Torsten; Martínez-Sánchez, Rafael M.; Vera-Rodríguez, Juan Carlos et al.

Ingår i Nature, s. 550-556, 2023

Artikel i tidskrift

• DOI för Northwest African Neolithic initiated by migrants from Iberia and Levant
• Ladda ner fulltext (pdf) av Northwest African Neolithic initiated by migrants from Iberia and Levant