Eva Lindström
Professor at Department of Ecology and Genetics; Limnology
- Telephone:
- +46 18 471 64 97
- E-mail:
- Eva.Lindstrom@ebc.uu.se
- Visiting address:
- Evolutionsbiologiskt centrum (EBC)
Norbyvägen 18 D
752 36 Uppsala - Postal address:
- Norbyvägen 18 D
752 36 Uppsala
Download contact information for Eva Lindström at Department of Ecology and Genetics; Limnology
- CV:
- Download CV
- ORCID:
- 0000-0001-8920-3071
Short presentation
The diversity of bacteria and other microorganisms in nature is enormous. Due to the usage of molecular tools, we now know that these communities change over time and space, but we don’t know why and if it matters for their role in ecosystems. In other words we lack basic knowledge about microbial ecology, and we don’t know if it is fundamentally different compared to ecology of other organisms. This is what I want to find out!
Keywords
- limnology
- lake
- bacteria
- diversity
Biography
Since 2013 I am a professor in Biology at Uppsala University at the Limnology program, where I am also a part of the Microbial Ecology group.
Previous achievements include a PhD degree in Limnology at Uppsala University in 1999, and a Docent title from the same university in 2004. I have held two postdoc positions, one in 1999-2000 at the Department of Limnology of the Austrian Academy of Sciences and one in 2004 at Université du Québec à Montréal.
During my time at Uppsala University I have been teaching corresponding to 10-50% of a full time position including course development and responsibility for 10 different undergraduate and Masters courses. I have done more than 400 hours of lectures in such courses.
Courses I currently teach as course coordinator:
Vattenvård (in Swedish)
I am also a member of the teacher team of the following courses:
Biodiversity and ecosystem functioning
Organismernas evolution och mångfald (in Swedish)
Biologi A (in Swedish)
Mikroorganismers liv och interaktioner (in Swedish)
Research
Two questions are central for my research:
1) Which factors are shaping microbial diversity?
2) Does the function of the microbial community in the ecosystem depend on the diversity or community composition?
My projects
My research is in microbial biogeography and the role of microorganisms in lake ecosystems.
The following questions are addressed in current and recent projects:
1) How important is dispersal of bacterial cells for bacterial community composition and functioning? Can massive dispersal of cells (mass effects) over shadow environmental steering factors for community composition? Is the sequence of dispersal of importance due to so called priority and monopolization effects? What about stochastic processes such as drift? Does the importance of these factors differ over season, among lakes of different types and among organism groups? What are the consequences of dispersal and community assembly for the functioning of microbial communities?
2) How important is photoheterotrophy for the role of bacteria and archaea in lake ecosystems? Phhotoheterotrophy means that light can be used as an energy source in other ways than through photosynthesis. However, we know very little about this processes, especially in lakes.
In general, questions about biogeography and biodiversity-ecosystem function relationships have been little addressed in microbial communities due to methodological constraints. Today we use novel DNA-sequencing techniques. This development has opened up the door for a new set of questions since diversity can be analysed to a great precision and depth. Finally we can address the over-all question of if microorganism biogeography and biodiversity follow similar rules as that of larger organisms or if they are fundamentally different. Only future will tell if this information will make us rewrite ecology textbooks!
Further, this research aims to increase our understanding of the role of microorganisms in ecosystems, where they play central roles in for instance carbon cycling. Thus, my research deals with the small players with global impact.
Recent and current projects have been made possible by financial support from for instance Vetenskapsrådet, The Wenner-Gren foundation, Carl Tryggers Stiftelse för Vetenskaplig forskning, Stiftelsen Oscar och Lili Lamms minne, Biodiversa, the Åforsk foundation and Stiftelsen Olle Engkvist Byggmästare.
See also my google scholar profile.
Group members
PhD students:
Sofia Papadopoulou (ecosystem consequences of dispersal)
Ingrid Bergman (photoheterotrophy in lake ecosystems)
Berenike Bick (community assembly, main supervisor Silke Langenheder)
Previous group members (selection):
Jürg Brendan Logue (PhD student, biogeography)
David Lymer (PhD student, viral ecology)
Martin Andersson (PhD student, bacterial diversity-ecosystem relationships)
Xinmei Feng (postdoc, biogeography)
Jérôme Comte (postdoc, biogeography)
Ina Severin (postdoc, diversity and function from a biogeography perspective)
Johanna Sjöstedt (postdoc Microbial diversity and ecosystem functioning)
Karen Lebret (postdoc Ecological tipping points, bacteria and phytoplankton interactions)
Sophia Renes (PhD student, Resilience of microbial communities, SLU)
Karla Münzner (PhD student, causes and consequences of algal blooms)
Ingrid Sassenhagen (postdoc, parasites of phytoplankton blooms)
Theresa Lumpi (PhD student, community assembly)
Josefin Nilsson (PhD student, Högskolan i Halmstad)
Editor-in-chief
I am the editor-in-chief for the scientific journal Aquatic Microbial Ecology

Publications
Selection of publications
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Part of Limnology and Oceanography, p. 2192-2207, 2025
- DOI for Nuisance alga reduces lake partial pressure of carbon dioxide and carbon flux to the atmosphere in boreal lakes
- Download full text (pdf) of Nuisance alga reduces lake partial pressure of carbon dioxide and carbon flux to the atmosphere in boreal lakes
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Ciliate Grazing on the Bloom-Forming Microalga Gonyostomum semen
Part of Microbial Ecology, 2024
- DOI for Ciliate Grazing on the Bloom-Forming Microalga Gonyostomum semen
- Download full text (pdf) of Ciliate Grazing on the Bloom-Forming Microalga Gonyostomum semen
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Part of Environmental Microbiology, p. 2289-2302, 2023
- DOI for Nutrient availability and grazing influence the strength of priority effects during freshwater bacterial community coalescence
- Download full text (pdf) of Nutrient availability and grazing influence the strength of priority effects during freshwater bacterial community coalescence
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High Iron Requirements for Growth in the Nuisance Alga Gonyostomum semen (Raphidophyceae)
Part of Journal of Phycology, p. 1309-1322, 2021
- DOI for High Iron Requirements for Growth in the Nuisance Alga Gonyostomum semen (Raphidophyceae)
- Download full text (pdf) of High Iron Requirements for Growth in the Nuisance Alga Gonyostomum semen (Raphidophyceae)
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Factors influencing aquatic and terrestrial bacterial community assembly
Part of Environmental Microbiology Reports, p. 306-315, 2019
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Part of Scientific Reports, 2018
- DOI for High abundances of the nuisance raphidophyte Gonyostomum semen in brown water lakes are associated with high concentrations of iron
- Download full text (pdf) of High abundances of the nuisance raphidophyte Gonyostomum semen in brown water lakes are associated with high concentrations of iron
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Dispersal timing determines the importance of priority effects in bacterial communities
Part of The ISME Journal, p. 644-646, 2018
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Part of Environmental Microbiology, p. 2391-2404, 2017
- DOI for Contribution of different bacterial dispersal sources to lakes: Population and community effects in different seasons
- Download full text (pdf) of Contribution of different bacterial dispersal sources to lakes: Population and community effects in different seasons
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Part of Environmental Microbiology Reports, p. 479-485, 2016
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Part of The ISME Journal, p. 533-545, 2016
- DOI for Experimental insights into the importance of aquatic bacterial community composition to the degradation of dissolved organic matter
- Download full text (pdf) of Experimental insights into the importance of aquatic bacterial community composition to the degradation of dissolved organic matter
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Part of PLOS ONE, 2013
- DOI for Variable Effects of Dispersal on Productivity of Bacterial Communities Due to Changes in Functional Trait Composition
- Download full text (pdf) of Variable Effects of Dispersal on Productivity of Bacterial Communities Due to Changes in Functional Trait Composition
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Local and regional factors influencing bacterial community assembly
Part of Environmental Microbiology Reports, p. 1-9, 2012
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Part of The ISME Journal, p. 1127-1136, 2012
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The Importance of Dispersal for Bacterial Community Composition and Functioning
Part of PLOS ONE, 2011
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Regional invariance among microbial communities
Part of Ecology Letters, p. 118-127, 2010
Recent publications
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Part of FEMS Microbiology Ecology, 2026
- DOI for Shared stream-lake patterns in diversity, rRNA-based activity and community assembly of bacteria and microeukaryotes under distinct hydrological regimes
- Download full text (pdf) of Shared stream-lake patterns in diversity, rRNA-based activity and community assembly of bacteria and microeukaryotes under distinct hydrological regimes
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Part of Limnology and Oceanography, p. 2192-2207, 2025
- DOI for Nuisance alga reduces lake partial pressure of carbon dioxide and carbon flux to the atmosphere in boreal lakes
- Download full text (pdf) of Nuisance alga reduces lake partial pressure of carbon dioxide and carbon flux to the atmosphere in boreal lakes
-
Linking nutrient availability and community size to stochasticity in microbial community assembly
Part of FEMS Microbiology Ecology, 2025
- DOI for Linking nutrient availability and community size to stochasticity in microbial community assembly
- Download full text (pdf) of Linking nutrient availability and community size to stochasticity in microbial community assembly
-
Ciliate Grazing on the Bloom-Forming Microalga Gonyostomum semen
Part of Microbial Ecology, 2024
- DOI for Ciliate Grazing on the Bloom-Forming Microalga Gonyostomum semen
- Download full text (pdf) of Ciliate Grazing on the Bloom-Forming Microalga Gonyostomum semen
-
Part of Environmental Microbiology, p. 2289-2302, 2023
- DOI for Nutrient availability and grazing influence the strength of priority effects during freshwater bacterial community coalescence
- Download full text (pdf) of Nutrient availability and grazing influence the strength of priority effects during freshwater bacterial community coalescence
All publications
Articles in journal
-
Part of FEMS Microbiology Ecology, 2026
- DOI for Shared stream-lake patterns in diversity, rRNA-based activity and community assembly of bacteria and microeukaryotes under distinct hydrological regimes
- Download full text (pdf) of Shared stream-lake patterns in diversity, rRNA-based activity and community assembly of bacteria and microeukaryotes under distinct hydrological regimes
-
Part of Limnology and Oceanography, p. 2192-2207, 2025
- DOI for Nuisance alga reduces lake partial pressure of carbon dioxide and carbon flux to the atmosphere in boreal lakes
- Download full text (pdf) of Nuisance alga reduces lake partial pressure of carbon dioxide and carbon flux to the atmosphere in boreal lakes
-
Linking nutrient availability and community size to stochasticity in microbial community assembly
Part of FEMS Microbiology Ecology, 2025
- DOI for Linking nutrient availability and community size to stochasticity in microbial community assembly
- Download full text (pdf) of Linking nutrient availability and community size to stochasticity in microbial community assembly
-
Ciliate Grazing on the Bloom-Forming Microalga Gonyostomum semen
Part of Microbial Ecology, 2024
- DOI for Ciliate Grazing on the Bloom-Forming Microalga Gonyostomum semen
- Download full text (pdf) of Ciliate Grazing on the Bloom-Forming Microalga Gonyostomum semen
-
Part of Environmental Microbiology, p. 2289-2302, 2023
- DOI for Nutrient availability and grazing influence the strength of priority effects during freshwater bacterial community coalescence
- Download full text (pdf) of Nutrient availability and grazing influence the strength of priority effects during freshwater bacterial community coalescence
-
Part of Scientific Reports, 2023
- DOI for Carbon dioxide reduction by photosynthesis undetectable even during phytoplankton blooms in two lakes
- Download full text (pdf) of Carbon dioxide reduction by photosynthesis undetectable even during phytoplankton blooms in two lakes
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Infection strategies of different chytrids in a diatom spring bloom
Part of Freshwater Biology, p. 972-986, 2023
- DOI for Infection strategies of different chytrids in a diatom spring bloom
- Download full text (pdf) of Infection strategies of different chytrids in a diatom spring bloom
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Warming mediates the resistance of aquatic bacteria to invasion during community coalescence
Part of Molecular Ecology, p. 1345-1356, 2021
- DOI for Warming mediates the resistance of aquatic bacteria to invasion during community coalescence
- Download full text (pdf) of Warming mediates the resistance of aquatic bacteria to invasion during community coalescence
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Part of Limnology and Oceanography, p. 818-835, 2021
- DOI for Comprehensive analysis of chemical and biological problems associated with browning agents used in aquatic studies
- Download full text (pdf) of Comprehensive analysis of chemical and biological problems associated with browning agents used in aquatic studies
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High Iron Requirements for Growth in the Nuisance Alga Gonyostomum semen (Raphidophyceae)
Part of Journal of Phycology, p. 1309-1322, 2021
- DOI for High Iron Requirements for Growth in the Nuisance Alga Gonyostomum semen (Raphidophyceae)
- Download full text (pdf) of High Iron Requirements for Growth in the Nuisance Alga Gonyostomum semen (Raphidophyceae)
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Part of Scientific Reports, p. 1-13, 2020
- DOI for Using null models to compare bacterial and microeukaryotic metacommunity assembly under shifting environmental conditions
- Download full text (pdf) of Using null models to compare bacterial and microeukaryotic metacommunity assembly under shifting environmental conditions
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Streamlined and Abundant Bacterioplankton Thrive in Functional Cohorts
Part of mSystems, 2020
- DOI for Streamlined and Abundant Bacterioplankton Thrive in Functional Cohorts
- Download full text (pdf) of Streamlined and Abundant Bacterioplankton Thrive in Functional Cohorts
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Part of Frontiers in Ecology and Evolution, p. 1-15, 2020
- DOI for Different Roles of Environmental Selection, Dispersal, and Drift in the Assembly of Intestinal Microbial Communities of Freshwater Fish With and Without a Stomach
- Download full text (pdf) of Different Roles of Environmental Selection, Dispersal, and Drift in the Assembly of Intestinal Microbial Communities of Freshwater Fish With and Without a Stomach
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Decomposing multiple dimensions of stability in global change experiments
Part of Ecology Letters, p. 21-30, 2018
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Part of Environmental Microbiology Reports, p. 493-500, 2018
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Increased water colour affects freshwater plankton communities in a mesocosm study
Part of Aquatic Microbial Ecology, p. 1-17, 2018
- DOI for Increased water colour affects freshwater plankton communities in a mesocosm study
- Download full text (pdf) of Increased water colour affects freshwater plankton communities in a mesocosm study
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Part of Scientific Reports, 2018
- DOI for Sharing of photobionts in sympatric populations of Thamnolia and Cetraria lichens: evidence from high-throughput sequencing
- Download full text (pdf) of Sharing of photobionts in sympatric populations of Thamnolia and Cetraria lichens: evidence from high-throughput sequencing
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Part of Scientific Reports, 2018
- DOI for High abundances of the nuisance raphidophyte Gonyostomum semen in brown water lakes are associated with high concentrations of iron
- Download full text (pdf) of High abundances of the nuisance raphidophyte Gonyostomum semen in brown water lakes are associated with high concentrations of iron
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Part of Aquatic Microbial Ecology, p. 199-208, 2018
- DOI for Effects of sterilization on dissolved organic carbon (DOC) composition and bacterial utilization of DOC from lakes
- Download full text (pdf) of Effects of sterilization on dissolved organic carbon (DOC) composition and bacterial utilization of DOC from lakes
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Dispersal timing determines the importance of priority effects in bacterial communities
Part of The ISME Journal, p. 644-646, 2018
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Part of Aquatic Microbial Ecology, p. 101-103, 2017
- DOI for Progress and perspectives in aquatic microbial ecology: highlights of the SAME 14, Uppsala, Sweden, 2015
- Download full text (pdf) of Progress and perspectives in aquatic microbial ecology: highlights of the SAME 14, Uppsala, Sweden, 2015
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Part of Environmental Microbiology, p. 251-260, 2017
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Part of Environmental Microbiology, p. 5078-5087, 2017
- DOI for Influence of pulsed and continuous substrate inputs on freshwater bacterial community composition and functioning in bioreactors
- Download full text (pdf) of Influence of pulsed and continuous substrate inputs on freshwater bacterial community composition and functioning in bioreactors
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Part of Environmental Microbiology, p. 2391-2404, 2017
- DOI for Contribution of different bacterial dispersal sources to lakes: Population and community effects in different seasons
- Download full text (pdf) of Contribution of different bacterial dispersal sources to lakes: Population and community effects in different seasons
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Part of Frontiers in Microbiology, 2016
- DOI for Microbes as Engines of Ecosystem Function: When Does Community Structure Enhance Predictions of Ecosystem Processes?
- Download full text (pdf) of Microbes as Engines of Ecosystem Function: When Does Community Structure Enhance Predictions of Ecosystem Processes?
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Part of Environmental Microbiology Reports, p. 479-485, 2016
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Part of The ISME Journal, p. 533-545, 2016
- DOI for Experimental insights into the importance of aquatic bacterial community composition to the degradation of dissolved organic matter
- Download full text (pdf) of Experimental insights into the importance of aquatic bacterial community composition to the degradation of dissolved organic matter
-
Part of Environmental Microbiology, p. 2275-2287, 2015
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Part of PLOS ONE, 2014
- DOI for Relationships between Bacterial Community Composition, Functional Trait Composition and Functioning Are Context Dependent – but What Is the Context?
- Download full text (pdf) of Relationships between Bacterial Community Composition, Functional Trait Composition and Functioning Are Context Dependent – but What Is the Context?
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The spatial structure of bacterial communities is influenced by historical environmental conditions
Part of Ecology, p. 1134-1140, 2014
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Can marine bacteria be recruited from freshwater sources and the air?
Part of The ISME Journal, p. 2423-2430, 2014
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Part of PLOS ONE, 2013
- DOI for Variable Effects of Dispersal on Productivity of Bacterial Communities Due to Changes in Functional Trait Composition
- Download full text (pdf) of Variable Effects of Dispersal on Productivity of Bacterial Communities Due to Changes in Functional Trait Composition
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Part of PLOS ONE, 2013
- DOI for Unveiling Distribution Patterns of Freshwater Phytoplankton by a Next Generation Sequencing Based Approach
- Download full text (pdf) of Unveiling Distribution Patterns of Freshwater Phytoplankton by a Next Generation Sequencing Based Approach
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Biogeography of bacterial communities exposed to progressive long-term environmental change
Part of The ISME Journal, p. 937-948, 2013
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Which sequencing depth is sufficient to describe patterns in bacterial a- and b-diversity?
Part of Environmental Microbiology Reports, p. 367-372, 2012
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Importance of space and the local environment for linking local and regional abundances of microbes
Part of Aquatic Microbial Ecology, p. 35-45, 2012
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Unraveling assembly of stream biofilm communities
Part of The ISME Journal: multidisciplinary journal of microbial ecology, p. 1459-1468, 2012
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Part of The ISME Journal, p. 1127-1136, 2012
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Function-specific response to depletion of microbial diversity
Part of The ISME Journal, p. 351-361, 2011
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The Importance of Dispersal for Bacterial Community Composition and Functioning
Part of PLOS ONE, 2011
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Part of Freshwater Biology, p. 1984-1996, 2010
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Regional invariance among microbial communities
Part of Ecology Letters, p. 118-127, 2010
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Part of Environmental Microbiology, p. 658-669, 2010
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Part of Limnology and Oceanography, p. 2052-2060, 2010
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Biogeography of bacterioplankton in inland waters.
Part of Freshwater Reviews, p. 99-114, 2008
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Part of Freshwater biology, 2008
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Part of Freshwater Biology, p. 1101-1113, 2008
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Temporal variation in freshwater viral and bacterial community composition
Part of Freshwater Biology, p. 1163-1175, 2008
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Part of Freshwater Biology, p. 2520-2529, 2008
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First evidence for a bipolar distribution of dominant freshwater lake bacterioplankton
Part of Antarctic Science, p. 245-252, 2007
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Does ecosystem size determine aquatic bacterial richness? Comment
Part of Ecology, p. 252-253, 2007
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Part of Ecology, p. 2985-2991, 2006
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Part of FEMS Microbiology Ecology, p. 406-417, 2006
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Part of Applied and Environmental Microbiology, p. 212-220, 2006
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External control of bacterial community structure in lakes.
Part of Limnology & Oceanography, p. 339-342, 2006
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Weak coupling between community composition and functioning of aquatic bacteria
Part of Limnology and Oceanography, p. 957-967, 2005
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Part of Applied and Environmental Microbiology ., p. 8201-8206, 2005
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Part of Aquatic Sciences, p. 210-219, 2005
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Growth dynamics within bacterial communities in riverine and estuarine batch cultures
Part of Aquatic Microbial Ecology, p. 137-148, 2004
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Part of Journal of Plankton Research, p. 241-246, 2004
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Production and food web interactions of Arctic freshwater plankton and responses to increased DOC
Part of Archiv für Hydrobiologie, p. 289-307, 2004
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Growth dynamics within bacterial communities in riverine and estuarine batch cultures
Part of Aquatic Microbial Ecology, p. 137-148, 2004
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Part of Limnol. Oceanogr., 2004
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Viral and Bacterioplankton Dynamics in Two Lakes with Different Humic Contents
Part of Microb Ecol, 2003
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Live sorting and survival of unstained and DAPI-stained ciliates by flow cytometry
Part of Arch. Hydrobiol, p. 173-184, 2003
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Rapid Screening for Freshwater Bacterial Groups by Using Reverse Line Blot Hybridization
Part of Applied and Environmental Microbiology,, p. 5875-5883, 2003
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Enumeration of small ciliates in culture by flow cytometry and nucleic acid staining
Part of Journal of Microbiological Methods, p. 173-182, 2002
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Part of Microbial Ecology, p. 1-9, 2002
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Part of Limnol. Oceanogr., p. 1447-1455, 2002
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Part of Microbial Ecology, p. 598-605, 2001
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Bacterioplankton community composition in five lakes differing in trophic status and humic content
Part of MICROBIAL ECOLOGY, p. 104-113, 2000
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Bacterioplankton community composition in a boreal forest lake
Part of FEMS MICROBIOLOGY ECOLOGY, p. 163-174, 1998
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Bacterioplankton community composition in a boreal forest lake
Part of FEMS Microbiology Ecology, p. 163-174, 1998
Articles, review/survey
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Factors influencing aquatic and terrestrial bacterial community assembly
Part of Environmental Microbiology Reports, p. 306-315, 2019
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Local and regional factors influencing bacterial community assembly
Part of Environmental Microbiology Reports, p. 1-9, 2012
Chapters in book
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Bacterial Diversity in Freshwater
Part of Oxford Bibliographies in Ecology, Oxford University Press, 2017