Ylva Ivarsson

ASXLs binding to the PHD2/3 fingers of MLL4 provides a mechanism for the recruitment of BAP1 to active enhancers

Zhang, Yi; Xie, Guojia; Lee, Ji-Eun; Zandian, Mohamad et al.

Ingår i Nature Communications, 2024

• DOI för ASXLs binding to the PHD2/3 fingers of MLL4 provides a mechanism for the recruitment of BAP1 to active enhancers
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Proteome-scale characterisation of motif-based interactome rewiring by disease mutations

Kliche, Johanna; Simonetti, Leandro; Krystkowiak, Izabella; Kuss, Hanna et al.

Ingår i Molecular Systems Biology, s. 1025-1048, 2024

• DOI för Proteome-scale characterisation of motif-based interactome rewiring by disease mutations
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Exploring the short linear motif-mediated protein-protein interactions of CrkL through ProP-PD

Pagano, L.; Simonetti, Leandro; Pennacchietti, V.; Toto, A. et al.

Ingår i Biochemical and Biophysical Research Communications - BBRC, 2024

• DOI för Exploring the short linear motif-mediated protein-protein interactions of CrkL through ProP-PD

MLL4 binds TET3

Becht, Dustin C.; Mohid, Sk Abdul; Lee, Ji-Eun; Zandian, Mohamad et al.

Ingår i Structure, 2024

• DOI för MLL4 binds TET3

Evaluation of affinity-purification coupled to mass spectrometry approaches for capture of short linear motif-based interactions

Kassa, Eszter; Jamshidi, Sara; Mihalič, Filip; Simonetti, Leandro et al.

Ingår i Analytical Biochemistry, 2023

• DOI för Evaluation of affinity-purification coupled to mass spectrometry approaches for capture of short linear motif-based interactions
• Ladda ner fulltext (pdf) av Evaluation of affinity-purification coupled to mass spectrometry approaches for capture of short linear motif-based interactions

ASXLs binding to the PHD2/3 fingers of MLL4 provides a mechanism for the recruitment of BAP1 to active enhancers

Zhang, Yi; Xie, Guojia; Lee, Ji-Eun; Zandian, Mohamad et al.

Ingår i Nature Communications, 2024

• DOI för ASXLs binding to the PHD2/3 fingers of MLL4 provides a mechanism for the recruitment of BAP1 to active enhancers
• Ladda ner fulltext (pdf) av ASXLs binding to the PHD2/3 fingers of MLL4 provides a mechanism for the recruitment of BAP1 to active enhancers

Proteome-scale characterisation of motif-based interactome rewiring by disease mutations

Kliche, Johanna; Simonetti, Leandro; Krystkowiak, Izabella; Kuss, Hanna et al.

Ingår i Molecular Systems Biology, s. 1025-1048, 2024

• DOI för Proteome-scale characterisation of motif-based interactome rewiring by disease mutations
• Ladda ner fulltext (pdf) av Proteome-scale characterisation of motif-based interactome rewiring by disease mutations

Exploring the short linear motif-mediated protein-protein interactions of CrkL through ProP-PD

Pagano, L.; Simonetti, Leandro; Pennacchietti, V.; Toto, A. et al.

Ingår i Biochemical and Biophysical Research Communications - BBRC, 2024

• DOI för Exploring the short linear motif-mediated protein-protein interactions of CrkL through ProP-PD

MLL4 binds TET3

Becht, Dustin C.; Mohid, Sk Abdul; Lee, Ji-Eun; Zandian, Mohamad et al.

Ingår i Structure, 2024

• DOI för MLL4 binds TET3

Evaluation of affinity-purification coupled to mass spectrometry approaches for capture of short linear motif-based interactions

Kassa, Eszter; Jamshidi, Sara; Mihalič, Filip; Simonetti, Leandro et al.

Ingår i Analytical Biochemistry, 2023

• DOI för Evaluation of affinity-purification coupled to mass spectrometry approaches for capture of short linear motif-based interactions
• Ladda ner fulltext (pdf) av Evaluation of affinity-purification coupled to mass spectrometry approaches for capture of short linear motif-based interactions

Large‐scale phosphomimetic screening identifies phospho‐modulated motif‐based protein interactions

Kliche, Johanna; Garvanska, Dimitriya Hristoforova; Simonetti, Leandro; Badgujar, Dilip et al.

Ingår i Molecular Systems Biology, 2023

• DOI för Large‐scale phosphomimetic screening identifies phospho‐modulated motif‐based protein interactions

Identification of motif-based interactions between SARS-CoV-2 protein domains and human peptide ligands pinpoint antiviral targets

Mihalic, Filip; Benz, Caroline; Kassa, Eszter; Lindqvist, Richard et al.

Ingår i Nature Communications, 2023

• DOI för Identification of motif-based interactions between SARS-CoV-2 protein domains and human peptide ligands pinpoint antiviral targets
• Ladda ner fulltext (pdf) av Identification of motif-based interactions between SARS-CoV-2 protein domains and human peptide ligands pinpoint antiviral targets

Elucidation of Short Linear Motif-Based Interactions of the FERM Domains of Ezrin, Radixin, Moesin, and Merlin

Ali, Muhammad; Khramushin, Alisa; Yadav, Vikash K.; Schueler-Furman, Ora et al.

Ingår i Biochemistry, s. 1594-1607, 2023

• DOI för Elucidation of Short Linear Motif-Based Interactions of the FERM Domains of Ezrin, Radixin, Moesin, and Merlin
• Ladda ner fulltext (pdf) av Elucidation of Short Linear Motif-Based Interactions of the FERM Domains of Ezrin, Radixin, Moesin, and Merlin

The next wave of interactomics: Mapping the SLiM-based interactions of the intrinsically disordered proteome

Davey, Norman E.; Simonetti, Leandro; Ivarsson, Ylva

Ingår i Current opinion in structural biology, 2023

• DOI för The next wave of interactomics: Mapping the SLiM-based interactions of the intrinsically disordered proteome
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Large-scale phage-based screening reveals extensive pan-viral mimicry of host short linear motifs

Mihalič, Filip; Simonetti, Leandro; Giudice, Girolamo; Rubin Sander, Marie et al.

Ingår i Nature Communications, 2023

• DOI för Large-scale phage-based screening reveals extensive pan-viral mimicry of host short linear motifs
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Motif-dependent binding on the intervening domain regulates O-GlcNAc transferase

Blankenship, Connor M.; Xie, Jinshan; Benz, Caroline; Wang, Ao et al.

Ingår i Nature Chemical Biology, s. 1423-1431, 2023

• DOI för Motif-dependent binding on the intervening domain regulates O-GlcNAc transferase

ProP-PD for proteome-wide motif-mediated interaction discovery

Davey, Norman E.; Simonetti, Leandro; Ivarsson, Ylva

Ingår i TIBS -Trends in Biochemical Sciences. Regular ed., s. 547-548, 2022

• DOI för ProP-PD for proteome-wide motif-mediated interaction discovery
• Ladda ner fulltext (pdf) av ProP-PD for proteome-wide motif-mediated interaction discovery

Proteome-scale mapping of binding sites in the unstructured regions of the human proteome

Benz, Caroline; Ali, Muhammad; Krystkowiak, Izabella; Simonetti, Leandro et al.

Ingår i Molecular Systems Biology, 2022

• DOI för Proteome-scale mapping of binding sites in the unstructured regions of the human proteome
• Ladda ner fulltext (pdf) av Proteome-scale mapping of binding sites in the unstructured regions of the human proteome

A Syntenin Inhibitor Blocks Endosomal Entry of SARS-CoV-2 and a Panel of RNA Viruses

Lindqvist, Richard; Benz, Caroline; Sereikaite, Vita; Maassen, Lars et al.

Ingår i Viruses, 2022

• DOI för A Syntenin Inhibitor Blocks Endosomal Entry of SARS-CoV-2 and a Panel of RNA Viruses
• Ladda ner fulltext (pdf) av A Syntenin Inhibitor Blocks Endosomal Entry of SARS-CoV-2 and a Panel of RNA Viruses

Coupling to short linear motifs creates versatile PME-1 activities in PP2A holoenzyme demethylation and inhibition

Li, Yitong; Balakrishnan, Vijaya Kumar; Rowse, Michael; Wu, Cheng-Guo et al.

Ingår i eLIFE, 2022

• DOI för Coupling to short linear motifs creates versatile PME-1 activities in PP2A holoenzyme demethylation and inhibition
• Ladda ner fulltext (pdf) av Coupling to short linear motifs creates versatile PME-1 activities in PP2A holoenzyme demethylation and inhibition

Large scale discovery of coronavirus-host factor protein interaction motifs reveals SARS-CoV-2 specific mechanisms and vulnerabilities

Kruse, Thomas; Benz, Caroline; Garvanska, Dimitriya H.; Lindqvist, Richard et al.

Ingår i Nature Communications, 2021

• DOI för Large scale discovery of coronavirus-host factor protein interaction motifs reveals SARS-CoV-2 specific mechanisms and vulnerabilities
• Ladda ner fulltext (pdf) av Large scale discovery of coronavirus-host factor protein interaction motifs reveals SARS-CoV-2 specific mechanisms and vulnerabilities

Cytoplasmic short linear motifs in ACE2 and integrin beta(3) link SARS-CoV-2 host cell receptors to mediators of endocytosis and autophagy

Kliche, Johanna; Kuss, Hanna; Ali, Muhammad; Ivarsson, Ylva

Ingår i Science Signaling, 2021

• DOI för Cytoplasmic short linear motifs in ACE2 and integrin beta(3) link SARS-CoV-2 host cell receptors to mediators of endocytosis and autophagy

Integrated analysis of Shank1 PDZ interactions with C-terminal and internal binding motifs

Ali, Muhammad; McAuley, Mishal Mariam; Lüchow, Susanne; Knapp, Stefan et al.

Ingår i Current Research in Structural Biology, s. 41-50, 2021

• DOI för Integrated analysis of Shank1 PDZ interactions with C-terminal and internal binding motifs
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A High-Affinity Peptide Ligand Targeting Syntenin Inhibits Glioblastoma

Haugaard-Kedström, Linda M.; Clemmensen, Louise S.; Sereikaite, Vita; Jin, Zeyu et al.

Ingår i Journal of Medicinal Chemistry, s. 1423-1434, 2021

• DOI för A High-Affinity Peptide Ligand Targeting Syntenin Inhibits Glioblastoma

Deciphering the Unexpected Binding Capacity of the Third PDZ Domain of Whirlin to Various Cochlear Hair Cell Partners

Zhu, Yanlei; Delhommel, Florent; Cordier, Florence; Lüchow, Susanne et al.

Ingår i Journal of Molecular Biology, s. 5920-5937, 2020

• DOI för Deciphering the Unexpected Binding Capacity of the Third PDZ Domain of Whirlin to Various Cochlear Hair Cell Partners

Genetically Encoded Cyclic Peptide Phage Display Libraries

Simonetti, Leandro; Ivarsson, Ylva

Ingår i ACS CENTRAL SCIENCE, s. 336-338, 2020

• DOI för Genetically Encoded Cyclic Peptide Phage Display Libraries
• Ladda ner fulltext (pdf) av Genetically Encoded Cyclic Peptide Phage Display Libraries

Profiling calcium-dependent interactions between Sorcin and intrinsically disordered regions of human proteome

Genovese, Ilaria; Carotti, Andrea; Ilari, Andrea; Fiorillo, Annarita et al.

Ingår i Biochimica et Biophysica Acta - General Subjects, 2020

• DOI för Profiling calcium-dependent interactions between Sorcin and intrinsically disordered regions of human proteome

Systematic Discovery of Short Linear Motifs Decodes Calcineurin Phosphatase Signaling

Wigington, Callie P.; Roy, Jagoree; Damle, Nikhil P.; Yadav, Vikash K. et al.

Ingår i Molecular Cell, s. 342-+, 2020

• DOI för Systematic Discovery of Short Linear Motifs Decodes Calcineurin Phosphatase Signaling

Systematic identification of recognition motifs for the hub protein LC8

Jespersen, Nathan; Estelle, Aidan; Waugh, Nathan; Davey, Norman E. et al.

Ingår i Life Science Alliance, 2019

• DOI för Systematic identification of recognition motifs for the hub protein LC8
• Ladda ner fulltext (pdf) av Systematic identification of recognition motifs for the hub protein LC8

A Consensus Binding Motif for the PP4 Protein Phosphatase

Ueki, Yumi; Kruse, Thomas; Weisser, Melanie Bianca; Sundell, Gustav N. et al.

Ingår i Molecular Cell, s. 953-964000000, 2019

• DOI för A Consensus Binding Motif for the PP4 Protein Phosphatase

Editorial overview: Folding and binding

Ivarsson, Ylva; Jemth, Per

Ingår i Current opinion in structural biology, s. 139-140, 2019

• DOI för Editorial overview: Folding and binding

Proteome‐wide analysis of phospho‐regulated PDZ domain interactions

Sundell, Gustav; Arnold, Roland; Ali, Muhammad; Naksukpaiboon, Piangfan et al.

Ingår i Molecular Systems Biology, 2018

• DOI för Proteome‐wide analysis of phospho‐regulated PDZ domain interactions
• Ladda ner fulltext (pdf) av Proteome‐wide analysis of phospho‐regulated PDZ domain interactions

High-throughput discovery of functional disordered regions

Ali, Muhammad; Ivarsson, Ylva

Ingår i Molecular Systems Biology, 2018

• DOI för High-throughput discovery of functional disordered regions

The Sign of Nuclear Magnetic Resonance Chemical Shift Difference as a Determinant of the Origin of Binding Selectivity: Elucidation of the Position Dependence of Phosphorylation in Ligands Binding to Scribble PDZ1

Sundell, Gustav; Vögeli, Beat; Ivarsson, Ylva; Chi, Celestine N.

Ingår i Biochemistry, s. 66-71, 2018

• DOI för The Sign of Nuclear Magnetic Resonance Chemical Shift Difference as a Determinant of the Origin of Binding Selectivity: Elucidation of the Position Dependence of Phosphorylation in Ligands Binding to Scribble PDZ1
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Discovery of short linear motif-mediated interactions through phage display of intrinsically disordered regions of the human proteome

Davey, Norman E.; Seo, Moon-Hyeong; Yadav, Vikash Kumar; Jeon, Jouhyun et al.

Ingår i The FEBS Journal, s. 485-498, 2017

• DOI för Discovery of short linear motif-mediated interactions through phage display of intrinsically disordered regions of the human proteome
• Ladda ner fulltext (pdf) av Discovery of short linear motif-mediated interactions through phage display of intrinsically disordered regions of the human proteome

PP2A-B' holoenzyme substrate recognition, regulation and role in cytokinesis

Wu, Cheng-Guo; Chen, Hui; Guo, Feng; Yadav, Vikash K et al.

Ingår i Cell Discovery, 2017

• DOI för PP2A-B' holoenzyme substrate recognition, regulation and role in cytokinesis
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A novel role for the Calcineurin phosphatase at the nuclear pore

Wigington, C. P.; Roy, J.; Damle, N. P.; Ulengin-Talkish, I. et al.

Ingår i Molecular Biology of the Cell, s. 3727-3727, 2017

• DOI för A novel role for the Calcineurin phosphatase at the nuclear pore

Mapping the human calcineurin phosphatase signaling network through global identification of short linear motifs that mediate substrate recognition

Roy, J.; Wigington, C. P.; Damle, N. P.; Ulengin-Talkish, I. et al.

Ingår i Molecular Biology of the Cell, s. 3727-3727, 2017

• DOI för Mapping the human calcineurin phosphatase signaling network through global identification of short linear motifs that mediate substrate recognition

Investigating the phospho-regulation of ER shaping protein RTN1A (Reticulon-1A) by the Calcineurin phosphatase.

Cho, S. Ei; Roy, J.; Ivarsson, Ylva; Cyert, M. S.

Ingår i Molecular Biology of the Cell, s. 3727-3727, 2017

• DOI för Investigating the phospho-regulation of ER shaping protein RTN1A (Reticulon-1A) by the Calcineurin phosphatase.

Uncovering Novel Substrates and Functions for the Calcineurin Phosphatase in Human Cells

Wigington, Callie P.; Roy, Jagoree; Damle, Nikhil P.; El Cho, Shein et al.

Ingår i The FASEB Journal, 2017

Pooled screening for antiproliferative inhibitors of protein-protein interactions.

Nim, Satra; Jeon, Jouhyun; Corbi-Verge, Carles; Seo, Moon-Hyeong et al.

Ingår i Nature Chemical Biology, s. 275-281, 2016

• DOI för Pooled screening for antiproliferative inhibitors of protein-protein interactions.

Proteomic peptide phage display uncovers novel interactions of the PDZ1-2 supramodule of syntenin

Garrido-Urbani, Sarah; Garg, Pankaj; Ghossoub, Rania; Arnold, Roland et al.

Ingår i FEBS Letters, s. 3-12, 2016

• DOI för Proteomic peptide phage display uncovers novel interactions of the PDZ1-2 supramodule of syntenin
• Ladda ner fulltext (pdf) av Proteomic peptide phage display uncovers novel interactions of the PDZ1-2 supramodule of syntenin

Frizzled 7 and PIP2 binding by syntenin PDZ2 domain supports Frizzled 7 trafficking and signalling

Egea-Jimenez, Antonio Luis; Gallardo, Rodrigo; Garcia-Pino, Abel; Ivarsson, Ylva et al.

Ingår i Nature Communications, 2016

• DOI för Frizzled 7 and PIP2 binding by syntenin PDZ2 domain supports Frizzled 7 trafficking and signalling
• Ladda ner fulltext (pdf) av Frizzled 7 and PIP2 binding by syntenin PDZ2 domain supports Frizzled 7 trafficking and signalling

Improved affinity at the cost of decreased specificity: a recurring theme in PDZ-peptide interactions.

Karlsson, O Andreas; Sundell, Gustav N; Andersson, Eva; Ivarsson, Ylva et al.

Ingår i Scientific Reports, 2016

• DOI för Improved affinity at the cost of decreased specificity: a recurring theme in PDZ-peptide interactions.
• Ladda ner fulltext (pdf) av Improved affinity at the cost of decreased specificity: a recurring theme in PDZ-peptide interactions.

Uncovering novel substrates and functions for the calcineurin phosphatase in human cells.

Wigington, C. P.; Damle, N. P.; Roy, J.; Cho, S. E. et al.

Ingår i Molecular Biology of the Cell, 2016

• DOI för Uncovering novel substrates and functions for the calcineurin phosphatase in human cells.

Selectivity of Aggregation-Determining Interactions

Ganesan, Ashok; Debulpaep, Maja; Wilkinson, Hannah; Van Durme, Joost et al.

Ingår i Journal of Molecular Biology, s. 236-247, 2015

• DOI för Selectivity of Aggregation-Determining Interactions

Structural basis of Sorcin-mediated calcium-dependent signal transduction

Ilari, Andrea; Fiorillo, Annarita; Poser, Elena; Lalioti, Vasiliki S. et al.

Ingår i Scientific Reports, 2015

A Structural Portrait of the PDZ Domain Family

Ernst, Andreas; Appleton, Brent A; Ivarsson, Ylva; Zhang, Yingnan et al.

Ingår i Journal of Molecular Biology, s. 3509-3519, 2014

• DOI för A Structural Portrait of the PDZ Domain Family

Large-scale interaction profiling of PDZ domains through proteomic peptide-phage display using human and viral phage peptidomes

Ivarsson, Ylva; Arnold, Roland; McLaughlin, Megan; Nim, Satra et al.

Ingår i Proceedings of the National Academy of Sciences of the United States of America, s. 2542-2547, 2014

• DOI för Large-scale interaction profiling of PDZ domains through proteomic peptide-phage display using human and viral phage peptidomes

The Development and Characterization of a Peptide-Based Syntenin Inhibitor: Implacations for Cancer Metastasis

Haugaard-Kedstrom, L. M.; Albertsen, L.; Gil, F. Abalde; Ivarsson, Ylva et al.

Ingår i Journal of Peptide Science, 2014

A ZO-1/α5β1-integrin complex regulates cytokinesis downstream of PKCε in NCI-H460 cells plated on fibronectin

Hämälistö, Saara; Pouwels, Jeroen; de Franceschi, Nicola; Saari, Markku et al.

Ingår i PLOS ONE, 2013

• DOI för A ZO-1/α5β1-integrin complex regulates cytokinesis downstream of PKCε in NCI-H460 cells plated on fibronectin

Prevalence, specificity and determinants of lipid-interacting PDZ domains from an in-cell screen and in vitro binding experiments

Ivarsson, Ylva; Wawrzyniak, Anna Maria; Kashyap, Rudra; Polanowska, Jolanta et al.

Ingår i PloS one, 2013

• DOI för Prevalence, specificity and determinants of lipid-interacting PDZ domains from an in-cell screen and in vitro binding experiments

Extensions of PSD-95/discs large/ZO-1 (PDZ) domains influence lipid binding and membrane targeting of syntenin-1

Wawrzyniak, Anna Maria; Vermeiren, Elke; Zimmermann, Pascale; Ivarsson, Ylva

Ingår i FEBS Letters, s. 1445-1451, 2012

• DOI för Extensions of PSD-95/discs large/ZO-1 (PDZ) domains influence lipid binding and membrane targeting of syntenin-1

Plasticity of PDZ domains in ligand recognition and signaling

Ivarsson, Ylva

Ingår i FEBS Letters, s. 2638-47, 2012

• DOI för Plasticity of PDZ domains in ligand recognition and signaling

Syntenin, a syndecan adaptor and an Arf6 phosphatidylinositol 4,5-bisphosphate effector, is essential for epiboly and gastrulation cell movements in zebrafish

Lambaerts, Kathleen; Van Dyck, Stijn; Mortier, Eva; Ivarsson, Ylva et al.

Ingår i Journal of Cell Science, s. 1129-1140, 2012

• DOI för Syntenin, a syndecan adaptor and an Arf6 phosphatidylinositol 4,5-bisphosphate effector, is essential for epiboly and gastrulation cell movements in zebrafish

Syndecan-syntenin-ALIX regulates the biogenesis of exosomes

Baietti, Maria Francesca; Zhang, Zhe; Mortier, Eva; Melchior, Aurélie et al.

Ingår i Nature cell biology, s. 677-685, 2012

• DOI för Syndecan-syntenin-ALIX regulates the biogenesis of exosomes

Cooperative phosphoinositide and peptide binding by PSD-95/discs large/ZO-1 (PDZ) domain of polychaetoid, Drosophila zonulin

Ivarsson, Ylva; Wawrzyniak, Anna Maria; Wuytens, Gunther; Kosloff, Mickey et al.

Ingår i Journal of Biological Chemistry, s. 44669-78, 2011

• DOI för Cooperative phosphoinositide and peptide binding by PSD-95/discs large/ZO-1 (PDZ) domain of polychaetoid, Drosophila zonulin

Misregulated alternative splicing of BIN1 is associated with T tubule alterations and muscle weakness in myotonic dystrophy

Fugier, Charlotte; Klein, Arnaud F; Hammer, Caroline; Vassilopoulos, Stéphane et al.

Ingår i Nature medicine, s. 720-725, 2011

• DOI för Misregulated alternative splicing of BIN1 is associated with T tubule alterations and muscle weakness in myotonic dystrophy

Structural diversity of PDZ-lipid interactions

Gallardo, Rodrigo; Ivarsson, Ylva; Schymkowitz, Joost; Rousseau, Frédéric et al.

Ingår i ChemBioChem, s. 456-67, 2010

• DOI för Structural diversity of PDZ-lipid interactions

Structural characterization of a misfolded intermediate populated during the folding process of a PDZ domain

Gianni, Stefano; Ivarsson, Ylva; De Simone, Alfonso; Travaglini-Allocatelli, Carlo et al.

Ingår i Nature Structural & Molecular Biology, s. 1431-1437, 2010

• DOI för Structural characterization of a misfolded intermediate populated during the folding process of a PDZ domain

Folding and stability of globular proteins and implications for function

Travaglini-Allocatelli, Carlo; Ivarsson, Ylva; Jemth, Per; Gianni, Stefano

Ingår i Current opinion in structural biology, s. 3-7, 2009

• DOI för Folding and stability of globular proteins and implications for function

Engineered symmetric connectivity of secondary structure elements highlights malleability of protein folding pathways

Ivarsson, Ylva; Travaglini-Allocatelli, Carlo; Brunori, Maurizio; Gianni, Stefano

Ingår i Journal of the American Chemical Society, s. 11727-33, 2009

• DOI för Engineered symmetric connectivity of secondary structure elements highlights malleability of protein folding pathways

Folding and misfolding in a naturally occurring circularly permuted PDZ domain

Ivarsson, Ylva; Travaglini-Allocatelli, Carlo; Brunori, Maurizio; Gianni, Stefano

Ingår i Journal of Biological Chemistry, s. 8954-60, 2008

• DOI för Folding and misfolding in a naturally occurring circularly permuted PDZ domain

Mechanisms of protein folding

Ivarsson, Ylva; Travaglini-Allocatelli, Carlo; Brunori, Maurizio; Gianni, Stefano

Ingår i European Biophysics Journal, s. 721-728, 2008

• DOI för Mechanisms of protein folding

The folding pathway of an engineered circularly permuted PDZ domain

Ivarsson, Ylva; Travaglini-Allocatelli, Carlo; Morea, Veronica; Brunori, Maurizio et al.

Ingår i Protein Engineering Design & Selection, s. 155-160, 2008

• DOI för The folding pathway of an engineered circularly permuted PDZ domain

Engineering the enantioselectivity of glutathione transferase by combined active-site mutations and chemical modifications

Ivarsson, Ylva; Norrgård, Malena A.; Hellman, Ulf; Mannervik, Bengt

Ingår i Biochimica et Biophysica Acta - General Subjects, s. 1374-1381, 2007

• DOI för Engineering the enantioselectivity of glutathione transferase by combined active-site mutations and chemical modifications

An on-pathway intermediate in the folding of a PDZ domain

Ivarsson, Ylva; Travaglini-Allocatelli, Carlo; Jemth, Per; Malatesta, Francesco et al.

Ingår i Journal of Biological Chemistry, s. 8568-8572, 2007

• DOI för An on-pathway intermediate in the folding of a PDZ domain

Mechanism of Na(+) binding to thrombin resolved by ultra-rapid kinetics

Gianni, Stefano; Ivarsson, Ylva; Bah, Alaji; Bush-Pelc, Leslie A et al.

Ingår i Biophysical Chemistry, s. 111-114, 2007

• DOI för Mechanism of Na(+) binding to thrombin resolved by ultra-rapid kinetics

Alternative mutations of a positively selected residue elicit gain or loss of functionalities in enzyme evolution

Norrgård, Malena A; Ivarsson, Ylva; Tars, Kaspars; Mannervik, Bengt

Ingår i Proceedings of the National Academy of Sciences of the United States of America, s. 4876-4881, 2006

• DOI för Alternative mutations of a positively selected residue elicit gain or loss of functionalities in enzyme evolution

Regio- and enantioselectivity in epoxide conjugations are modulated by residue 210 in Mu class glutathione transferases

Ivarsson, Ylva; Mannervik, Bengt

Ingår i Protein Engineering Design and Selection, s. 607-616, 2006

Alternative mutations of a positively selected residue elicit gain or loss of functionalities in enzyme evolution

Norrgård, Malena A.; Ivarsson, Ylva; Tars, Kaspars; Mannervik, Bengt

Ingår i Proceedings of the National Academy of Sciences of the USA, s. 4876-4881, 2006

Exploring the importance of an active site residue on the stereo and regio selectivity of Mu class glutathione transferases

Ivarsson, Ylva; Mannervik, Bengt

Ingår i FEBS Journal, 2005

Regio- and enantioselectivities in epoxide conjugations are modulated by residue 210 in Mu class glutathione transferases.

Ivarsson, Ylva; Mannervik, Bengt

Ingår i Protein Eng Des Sel, s. 607-16, 2005

Identification of residues in glutathione transferase capable of driving functional diversification in evolution: A novel approach to protein redesign

Ivarsson, Ylva; Mackey, Aaron J.; Edalat, Maryam; Pearson, William R. et al.

Ingår i Journal of Biological Chemistry, s. 8733-8738, 2003

SLiM-binding pockets: an attractive target for broad-spectrum antivirals

Simonetti, Leandro; Nilsson, Jakob; McInerney, Gerald; Ivarsson, Ylva et al.

Ingår i TIBS -Trends in Biochemical Sciences. Regular ed., s. 420-427, 2023

• DOI för SLiM-binding pockets: an attractive target for broad-spectrum antivirals
• Ladda ner fulltext (pdf) av SLiM-binding pockets: an attractive target for broad-spectrum antivirals

p Orchestrating serine/threonine phosphorylation and elucidating downstream effects by short linear motifs

Kliche, Johanna; Ivarsson, Ylva

Ingår i Biochemical Journal, s. 1-22, 2022

• DOI för p Orchestrating serine/threonine phosphorylation and elucidating downstream effects by short linear motifs
• Ladda ner fulltext (pdf) av p Orchestrating serine/threonine phosphorylation and elucidating downstream effects by short linear motifs

How viral proteins bind short linear motifs and intrinsically disordered domains

Madhu, Priyanka; Davey, Norman E.; Ivarsson, Ylva

Ingår i Essays in Biochemistry, s. 935-944, 2022

• DOI för How viral proteins bind short linear motifs and intrinsically disordered domains

Affinity and specificity of motif-based protein-protein interactions

Ivarsson, Ylva; Jemth, Per

Ingår i Current opinion in structural biology, s. 26-33, 2019

• DOI för Affinity and specificity of motif-based protein-protein interactions
• Ladda ner fulltext (pdf) av Affinity and specificity of motif-based protein-protein interactions

Let There Be Light!

Raykova, Doroteya; Koos, Bjoern; Asplund, Anna; Gelleri, Marton et al.

Ingår i Proteomes, 2016

• DOI för Let There Be Light!
• Ladda ner fulltext (pdf) av Let There Be Light!

High-throughput methods for identification of protein-protein interactions involving short linear motifs

Blikstad, Cecilia; Ivarsson, Ylva

Ingår i Cell Communication and Signaling, 2015

• DOI för High-throughput methods for identification of protein-protein interactions involving short linear motifs
• Ladda ner fulltext (pdf) av High-throughput methods for identification of protein-protein interactions involving short linear motifs

Interaction Analysis through Proteomic Phage Display

Sundell, Gustav; Ivarsson, Ylva

Ingår i BioMed Research International, s. 176172, 2014

• DOI för Interaction Analysis through Proteomic Phage Display
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Identification and characterization of protein folding intermediates

Gianni, Stefano; Ivarsson, Ylva; Jemth, Per; Brunori, Maurizio et al.

Ingår i Biophysical Chemistry, s. 105-113, 2007

• DOI för Identification and characterization of protein folding intermediates

Combinatorial protein chemistry in three dimensions: a paradigm for the evolution of glutathione transferases with novel activities

Ivarsson, Ylva; Mannervik, Bengt

Ingår i Toxicology of Glutathione Transferases, s. 47-69, CRC Taylor & Francis, Boca Raton, 2006

Evaluation of affinity-purification coupled to mass spectrometry approaches for capture of short linear motif-based interactions

Kassa, Eszter; Jamshidi, Sara; Mihalič, Filip; Simonetti, Leandro et al.

• DOI för Evaluation of affinity-purification coupled to mass spectrometry approaches for capture of short linear motif-based interactions

Tick-borne flaviviruses recruits the pro viral factor NUP153 to the replication site

Akpiroro Peters, Marie Berit; Kassa, Eszter; Yau, Wai-Lok; Lindqvist, Richard et al.