Linnea Smeds
Bioinformatiker vid Institutionen för ekologi och genetik; Evolutionsbiologi
- Telefon:
- 018-471 64 17
- E-post:
- Linnea.Smeds@ebc.uu.se
- Besöksadress:
- Evolutionsbiologiskt Centrum
Norbyvägen 18D
752 36 UPPSALA - Postadress:
- Evolutionsbiologiskt centrum
Norbyvägen 18D
752 36 UPPSALA
Kort presentation
I am a bioinformatician and a PhD student in the Ellegren lab group and mainly work with wolf genomics. My current work involves comparing the recently established and highly inbred Scandinavian wolf population with wolves from Finland and Russia.
Publikationer
Urval av publikationer
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The evolutionary history of grey wolf Y chromosomes
Ingår i Molecular Ecology, s. 2173-2191, 2019
- DOI för The evolutionary history of grey wolf Y chromosomes
- Ladda ner fulltext (pdf) av The evolutionary history of grey wolf Y chromosomes
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Ingår i PLOS Genetics, 2016
- DOI för High-Resolution Mapping of Crossover and Non-crossover Recombination Events by Whole-Genome Re-sequencing of an Avian Pedigree
- Ladda ner fulltext (pdf) av High-Resolution Mapping of Crossover and Non-crossover Recombination Events by Whole-Genome Re-sequencing of an Avian Pedigree
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Direct estimate of the rate of germline mutation in a bird
Ingår i Genome Research, s. 1211-1218, 2016
- DOI för Direct estimate of the rate of germline mutation in a bird
- Ladda ner fulltext (pdf) av Direct estimate of the rate of germline mutation in a bird
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Evolutionary analysis of the female-specific avian W chromosome
Ingår i Nature Communications, 2015
- DOI för Evolutionary analysis of the female-specific avian W chromosome
- Ladda ner fulltext (pdf) av Evolutionary analysis of the female-specific avian W chromosome
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Ingår i Nature Communications, s. 5448, 2014
Senaste publikationer
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Ingår i Evolutionary Applications, 2024
- DOI för Comparing Genetic Ne Reconstructions Over Time With Long-Time Wolf Monitoring Data in Two Populations
- Ladda ner fulltext (pdf) av Comparing Genetic Ne Reconstructions Over Time With Long-Time Wolf Monitoring Data in Two Populations
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Ingår i Evolutionary Applications, 2024
- DOI för Structural genomic variation in the inbred Scandinavian wolf population contributes to the realized genetic load but is positively affected by immigration
- Ladda ner fulltext (pdf) av Structural genomic variation in the inbred Scandinavian wolf population contributes to the realized genetic load but is positively affected by immigration
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Conservation genomics in inbred Scandinavian wolves using bioinformatic methods
2024
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From high masked to high realized genetic load in inbred Scandinavian wolves
Ingår i Molecular Ecology, s. 1567-1580, 2023
- DOI för From high masked to high realized genetic load in inbred Scandinavian wolves
- Ladda ner fulltext (pdf) av From high masked to high realized genetic load in inbred Scandinavian wolves
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Whole-genome analyses provide no evidence for dog introgression in Fennoscandian wolf populations
Ingår i Evolutionary Applications, s. 721-734, 2021
- DOI för Whole-genome analyses provide no evidence for dog introgression in Fennoscandian wolf populations
- Ladda ner fulltext (pdf) av Whole-genome analyses provide no evidence for dog introgression in Fennoscandian wolf populations
Alla publikationer
Artiklar i tidskrift
-
Ingår i Evolutionary Applications, 2024
- DOI för Comparing Genetic Ne Reconstructions Over Time With Long-Time Wolf Monitoring Data in Two Populations
- Ladda ner fulltext (pdf) av Comparing Genetic Ne Reconstructions Over Time With Long-Time Wolf Monitoring Data in Two Populations
-
Ingår i Evolutionary Applications, 2024
- DOI för Structural genomic variation in the inbred Scandinavian wolf population contributes to the realized genetic load but is positively affected by immigration
- Ladda ner fulltext (pdf) av Structural genomic variation in the inbred Scandinavian wolf population contributes to the realized genetic load but is positively affected by immigration
-
From high masked to high realized genetic load in inbred Scandinavian wolves
Ingår i Molecular Ecology, s. 1567-1580, 2023
- DOI för From high masked to high realized genetic load in inbred Scandinavian wolves
- Ladda ner fulltext (pdf) av From high masked to high realized genetic load in inbred Scandinavian wolves
-
Whole-genome analyses provide no evidence for dog introgression in Fennoscandian wolf populations
Ingår i Evolutionary Applications, s. 721-734, 2021
- DOI för Whole-genome analyses provide no evidence for dog introgression in Fennoscandian wolf populations
- Ladda ner fulltext (pdf) av Whole-genome analyses provide no evidence for dog introgression in Fennoscandian wolf populations
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Ingår i Molecular Ecology, s. 3965-3973, 2021
- DOI för Genomic inference of contemporary effective population size in a large island population of collared flycatchers (Ficedula albicollis)
- Ladda ner fulltext (pdf) av Genomic inference of contemporary effective population size in a large island population of collared flycatchers (Ficedula albicollis)
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The evolutionary history of grey wolf Y chromosomes
Ingår i Molecular Ecology, s. 2173-2191, 2019
- DOI för The evolutionary history of grey wolf Y chromosomes
- Ladda ner fulltext (pdf) av The evolutionary history of grey wolf Y chromosomes
-
Genome sequencing and conservation genomics in the Scandinavian wolverine population
Ingår i Conservation Biology, s. 1301-1312, 2018
- DOI för Genome sequencing and conservation genomics in the Scandinavian wolverine population
- Ladda ner fulltext (pdf) av Genome sequencing and conservation genomics in the Scandinavian wolverine population
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Ingår i Molecular Ecology, s. 99-111, 2018
- DOI för Abundant recent activity of retrovirus-like retrotransposons within and among flycatcher species implies a rich source of structural variation in songbird genomes
- Ladda ner fulltext (pdf) av Abundant recent activity of retrovirus-like retrotransposons within and among flycatcher species implies a rich source of structural variation in songbird genomes
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Ingår i Molecular Ecology, s. 3572-3581, 2018
- DOI för Sex-biased gene expression, sexual antagonism and levels of genetic diversity in the collared flycatcher (Ficedula albicollis) genome
- Ladda ner fulltext (pdf) av Sex-biased gene expression, sexual antagonism and levels of genetic diversity in the collared flycatcher (Ficedula albicollis) genome
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Ingår i Molecular Ecology, s. 4158-4172, 2017
- DOI för Whole-genome patterns of linkage disequilibrium across flycatcher populations clarify the causes and consequences of fine-scale recombination rate variation in birds
- Ladda ner fulltext (pdf) av Whole-genome patterns of linkage disequilibrium across flycatcher populations clarify the causes and consequences of fine-scale recombination rate variation in birds
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Ingår i PLOS Genetics, 2016
- DOI för High-Resolution Mapping of Crossover and Non-crossover Recombination Events by Whole-Genome Re-sequencing of an Avian Pedigree
- Ladda ner fulltext (pdf) av High-Resolution Mapping of Crossover and Non-crossover Recombination Events by Whole-Genome Re-sequencing of an Avian Pedigree
-
Direct estimate of the rate of germline mutation in a bird
Ingår i Genome Research, s. 1211-1218, 2016
- DOI för Direct estimate of the rate of germline mutation in a bird
- Ladda ner fulltext (pdf) av Direct estimate of the rate of germline mutation in a bird
-
Evolutionary analysis of the female-specific avian W chromosome
Ingår i Nature Communications, 2015
- DOI för Evolutionary analysis of the female-specific avian W chromosome
- Ladda ner fulltext (pdf) av Evolutionary analysis of the female-specific avian W chromosome
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Ingår i Proceedings of the Royal Society of London. Biological Sciences, 2015
- DOI för Genome-wide association mapping in a wild avian population identifies a link between genetic and phenotypic variation in a life-history trait
- Ladda ner fulltext (pdf) av Genome-wide association mapping in a wild avian population identifies a link between genetic and phenotypic variation in a life-history trait
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Ingår i PLOS ONE, 2015
- DOI för A Transcriptome Derived Female-Specific Marker from the Invasive Western Mosquitofish (Gambusia affinis)
- Ladda ner fulltext (pdf) av A Transcriptome Derived Female-Specific Marker from the Invasive Western Mosquitofish (Gambusia affinis)
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Temporal Dynamics of Avian Populations during Pleistocene Revealed by Whole-Genome Sequences
Ingår i Current Biology, s. 1375-1380, 2015
- DOI för Temporal Dynamics of Avian Populations during Pleistocene Revealed by Whole-Genome Sequences
- Ladda ner fulltext (pdf) av Temporal Dynamics of Avian Populations during Pleistocene Revealed by Whole-Genome Sequences
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The Dynamics of Incomplete Lineage Sorting across the Ancient Adaptive Radiation of Neoavian Birds
Ingår i PLoS biology, 2015
- DOI för The Dynamics of Incomplete Lineage Sorting across the Ancient Adaptive Radiation of Neoavian Birds
- Ladda ner fulltext (pdf) av The Dynamics of Incomplete Lineage Sorting across the Ancient Adaptive Radiation of Neoavian Birds
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Resolving Evolutionary Relationships in Closely Related Species with Whole-Genome Sequencing Data
Ingår i Systematic Biology, s. 1000-1017, 2015
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Ingår i Genome Research, s. 1656-1665, 2015
- DOI för Linked selection and recombination rate variation drive the evolution of the genomic landscape of differentiation across the speciation continuum of Ficedula flycatchers
- Ladda ner fulltext (pdf) av Linked selection and recombination rate variation drive the evolution of the genomic landscape of differentiation across the speciation continuum of Ficedula flycatchers
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Patterns of sequencing coverage bias revealed by ultra-deep sequencing of vertebrate mitochondria
Ingår i BMC Genomics, s. 467, 2014
- DOI för Patterns of sequencing coverage bias revealed by ultra-deep sequencing of vertebrate mitochondria
- Ladda ner fulltext (pdf) av Patterns of sequencing coverage bias revealed by ultra-deep sequencing of vertebrate mitochondria
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Ingår i Nature Communications, s. 5448, 2014
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Whole-genome analyses resolve early branches in the tree of life of modern birds
Ingår i Science, s. 1320-1331, 2014
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Ingår i PLOS Genetics, 2013
- DOI för Demographic Divergence History of Pied Flycatcher and Collared Flycatcher Inferred from Whole-Genome Re-sequencing Data
- Ladda ner fulltext (pdf) av Demographic Divergence History of Pied Flycatcher and Collared Flycatcher Inferred from Whole-Genome Re-sequencing Data
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The genomic landscape of species divergence in Ficedula flycatchers
Ingår i Nature, s. 756-760, 2012
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ConDeTri: A content dependent read trimmer for Illumina data
Ingår i PLOS ONE, 2011
- DOI för ConDeTri: A content dependent read trimmer for Illumina data
- Ladda ner fulltext (pdf) av ConDeTri: A content dependent read trimmer for Illumina data
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Ingår i Nature, s. 757-762, 2010
Artiklar, forskningsöversikt
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Ingår i Molecular Ecology, s. 1058-1072, 2016
- DOI för PSMC analysis of effective population sizes in molecular ecology and its application to black-and-white Ficedula flycatchers
- Ladda ner fulltext (pdf) av PSMC analysis of effective population sizes in molecular ecology and its application to black-and-white Ficedula flycatchers
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Ingår i Molecular Ecology, s. 4035-4058, 2014
- DOI för A high-density linkage map enables a second-generation collared flycatcher genome assembly and reveals the patterns of avian recombination rate variation and chromosomal evolution
- Ladda ner fulltext (pdf) av A high-density linkage map enables a second-generation collared flycatcher genome assembly and reveals the patterns of avian recombination rate variation and chromosomal evolution