Ignas Bunikis

That's So Last Season: Unraveling the Genomic Consequences of Fur Farming in Arctic Foxes (Vulpes lagopus)

Cockerill, Christopher A.; Chacon-duque, J. Camilo; Bergfeldt, Nora; Von Seth, Johanna et al.

Ingår i Molecular Ecology, 2025

• DOI för That's So Last Season: Unraveling the Genomic Consequences of Fur Farming in Arctic Foxes (Vulpes lagopus)
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Genome Variation in Three Anthophora Bee Species Reflects Divergent Demographic Histories

Taliadoros, Demetris; Soares, André; Dias, Guilherme; Bunikis, Ignas et al.

Ingår i Molecular Ecology, 2025

• DOI för Genome Variation in Three Anthophora Bee Species Reflects Divergent Demographic Histories
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Genetic Adaptation to Brackish Water and Spawning Season in European Cisco

Deng, Qiaoling; Goodall, Jake; Bergenius Nord, Mikaela; Bunikis, Ignas et al.

Ingår i Molecular Ecology, 2025

• DOI för Genetic Adaptation to Brackish Water and Spawning Season in European Cisco
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Genomic studies in Linum shed light on the evolution of the distyly supergene and the molecular basis of convergent floral evolution

Zervakis, Panagiotis-Ioannis; Postel, Zoe; Losvik, Aleksandra; Fracassetti, Marco et al.

Ingår i New Phytologist, s. 2964-2981, 2025

• DOI för Genomic studies in Linum shed light on the evolution of the distyly supergene and the molecular basis of convergent floral evolution
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A chromosome-level genome assembly of the European green toad (Bufotes viridis)

Rödin Mörch, Patrik; Bunikis, Ignas; Choi, Eunkyoung; Ciofi, Claudio et al.

Ingår i G3, 2025

• DOI för A chromosome-level genome assembly of the European green toad (Bufotes viridis)
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That's So Last Season: Unraveling the Genomic Consequences of Fur Farming in Arctic Foxes (Vulpes lagopus)

Cockerill, Christopher A.; Chacon-duque, J. Camilo; Bergfeldt, Nora; Von Seth, Johanna et al.

Ingår i Molecular Ecology, 2025

• DOI för That's So Last Season: Unraveling the Genomic Consequences of Fur Farming in Arctic Foxes (Vulpes lagopus)
• Ladda ner fulltext (pdf) av That's So Last Season: Unraveling the Genomic Consequences of Fur Farming in Arctic Foxes (Vulpes lagopus)

Genome Variation in Three Anthophora Bee Species Reflects Divergent Demographic Histories

Taliadoros, Demetris; Soares, André; Dias, Guilherme; Bunikis, Ignas et al.

Ingår i Molecular Ecology, 2025

• DOI för Genome Variation in Three Anthophora Bee Species Reflects Divergent Demographic Histories
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Genetic Adaptation to Brackish Water and Spawning Season in European Cisco

Deng, Qiaoling; Goodall, Jake; Bergenius Nord, Mikaela; Bunikis, Ignas et al.

Ingår i Molecular Ecology, 2025

• DOI för Genetic Adaptation to Brackish Water and Spawning Season in European Cisco
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Genomic studies in Linum shed light on the evolution of the distyly supergene and the molecular basis of convergent floral evolution

Zervakis, Panagiotis-Ioannis; Postel, Zoe; Losvik, Aleksandra; Fracassetti, Marco et al.

Ingår i New Phytologist, s. 2964-2981, 2025

• DOI för Genomic studies in Linum shed light on the evolution of the distyly supergene and the molecular basis of convergent floral evolution
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A chromosome-level genome assembly of the European green toad (Bufotes viridis)

Rödin Mörch, Patrik; Bunikis, Ignas; Choi, Eunkyoung; Ciofi, Claudio et al.

Ingår i G3, 2025

• DOI för A chromosome-level genome assembly of the European green toad (Bufotes viridis)
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Large Inversions Shape Diversification and Genome Evolution in Common Quails

Ravagni, Sara; Montero-Mendieta, Santiago; Leonard, Jennifer A.; Webster, Matthew T. et al.

Ingår i Molecular Ecology, 2025

• DOI för Large Inversions Shape Diversification and Genome Evolution in Common Quails

The genome sequence of the white-tailed eagle, Haliaeetus albicilla (Linnaeus, 1758)

Pálsson, Snæbjörn; Skarphéðinsson, Kristinn Haukur; Heintz, Julia; Quarfordt, Pernilla et al.

Ingår i Wellcome Open Research, 2024

• DOI för The genome sequence of the white-tailed eagle, Haliaeetus albicilla (Linnaeus, 1758)
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Long-read sequencing and optical mapping generates near T2T assemblies that resolves a centromeric translocation

ten Berk de Boer, Esmee; Ameur, Adam; Bunikis, Ignas; Ek, Marlene et al.

Ingår i Scientific Reports, 2024

• DOI för Long-read sequencing and optical mapping generates near T2T assemblies that resolves a centromeric translocation
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A Chromosome-Level Genome Assembly and Annotation for the Clouded Apollo Butterfly (Parnassius mnemosyne): A Species of Global Conservation Concern

Höglund, Jacob; Dias, Guilherme; Olsen, Remi-André; Soares, André et al.

Ingår i Genome Biology and Evolution, 2024

• DOI för A Chromosome-Level Genome Assembly and Annotation for the Clouded Apollo Butterfly (Parnassius mnemosyne): A Species of Global Conservation Concern
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Limited Parallelism in Genetic Adaptation to Brackish Water Bodies in European Sprat and Atlantic Herring

Pettersson, Mats; Quintela, Maria; Besnier, Francois; Deng, Qiaoling et al.

Ingår i Genome Biology and Evolution, 2024

• DOI för Limited Parallelism in Genetic Adaptation to Brackish Water Bodies in European Sprat and Atlantic Herring
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Orthopteran Neo-Sex Chromosomes Reveal Dynamics of Recombination Suppression and Evolution of Supergenes

Jayaprasad, Suvratha; Peona, Valentina; Ellerstrand, Simon J.; Rossini, Roberto et al.

Ingår i Molecular Ecology, 2024

• DOI för Orthopteran Neo-Sex Chromosomes Reveal Dynamics of Recombination Suppression and Evolution of Supergenes
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A multiomic characterization of the leukemia cell line REH using short- and long-read sequencing

Lysenkova, Mariya; Arvidsson, Gustav; Bunikis, Ignas; Lundmark, Anders et al.

Ingår i Life Science Alliance, 2024

• DOI för A multiomic characterization of the leukemia cell line REH using short- and long-read sequencing
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Genetic Causes and Genomic Consequences of Breakdown of Distyly in Linum trigynum

Gutierrez-Valencia, Juanita; Zervakis, Panagiotis-Ioannis; Postel, Zoe; Fracassetti, Marco et al.

Ingår i Molecular biology and evolution, 2024

• DOI för Genetic Causes and Genomic Consequences of Breakdown of Distyly in Linum trigynum
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Ecological genomics in the Northern krill uncovers loci for local adaptation across ocean basins

Unneberg, Per; Larsson, Mårten; Olsson, Anna; Wallerman, Ola et al.

Ingår i Nature Communications, 2024

• DOI för Ecological genomics in the Northern krill uncovers loci for local adaptation across ocean basins
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Adaptive introgression reveals the genetic basis of a sexually selected syndrome in wall lizards

Feiner, Nathalie; Yang, Weizhao; Bunikis, Ignas; While, Geoffrey M. et al.

Ingår i Science Advances, 2024

• DOI för Adaptive introgression reveals the genetic basis of a sexually selected syndrome in wall lizards
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Long-read whole-genome analysis of human single cells

Hård, Joanna; Mold, Jeff E; Eisfeldt, Jesper; Tellgren-Roth, Christian et al.

Ingår i Nature Communications, 2023

• DOI för Long-read whole-genome analysis of human single cells
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Genomic, transcriptomic and epigenomic sequencing data of the B-cell leukemia cell line REH

Lysenkova Wiklander, Mariya; Övernäs, Elin; Lagensjö, Johanna; Raine, Amanda et al.

Ingår i BMC Research Notes, 2023

• DOI för Genomic, transcriptomic and epigenomic sequencing data of the B-cell leukemia cell line REH
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Novel cancer gene discovery using a forward genetic screen in RCAS-PDGFB-driven gliomas

Weishaupt, Holger; Čančer, Matko; Rosén, Gabriela; Holmberg, Karl O. et al.

Ingår i Neuro-Oncology, s. 97-107, 2023

• DOI för Novel cancer gene discovery using a forward genetic screen in RCAS-PDGFB-driven gliomas
• Ladda ner fulltext (pdf) av Novel cancer gene discovery using a forward genetic screen in RCAS-PDGFB-driven gliomas

Genomic analyses of the Linum distyly supergene reveal convergent evolution at the molecular level

Gutierrez-Valencia, Juanita; Fracassetti, Marco; Berdan, Emma L.; Bunikis, Ignas et al.

Ingår i Current Biology, s. 4360-4371000000, 2022

• DOI för Genomic analyses of the Linum distyly supergene reveal convergent evolution at the molecular level
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The genomic architecture of the passerine MHC region: High repeat content and contrasting evolutionary histories of single copy and tandemly duplicated MHC genes

Westerdahl, Helena; Mellinger, Samantha; Sigeman, Hanna; Kutschera, Verena E. et al.

Ingår i Molecular Ecology Resources, s. 2379-2395, 2022

• DOI för The genomic architecture of the passerine MHC region: High repeat content and contrasting evolutionary histories of single copy and tandemly duplicated MHC genes
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The Carniolan Honeybee from Slovenia-A Complete and Annotated Mitochondrial Genome with Comparisons to Closely Related Apis mellifera Subspecies

Moskric, Ajda; Marinc, Andraz; Ferk, Polonca; Leskosek, Brane et al.

Ingår i Insects, 2022

• DOI för The Carniolan Honeybee from Slovenia-A Complete and Annotated Mitochondrial Genome with Comparisons to Closely Related Apis mellifera Subspecies
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A genomic and morphometric analysis of alpine bumblebees: Ongoing reductions in tongue length but no clear genetic component

Christmas, Matthew; Jones, Julia; Olsson, Anna; Wallerman, Ola et al.

Ingår i Molecular Ecology, s. 1111-1127, 2022

• DOI för A genomic and morphometric analysis of alpine bumblebees: Ongoing reductions in tongue length but no clear genetic component
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Identifying the causes and consequences of assembly gaps using a multiplatform genome assembly of a bird-of-paradise

Peona, Valentina; Blom, Mozes P. K.; Xu, Luohao; Burri, Reto et al.

Ingår i Molecular Ecology Resources, s. 263-286, 2021

• DOI för Identifying the causes and consequences of assembly gaps using a multiplatform genome assembly of a bird-of-paradise
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Avian Neo-Sex Chromosomes Reveal Dynamics of Recombination Suppression and W Degeneration

Sigeman, Hanna; Strandh, Maria; Proux-Wera, Estelle; Kutschera, Verena E. et al.

Ingår i Molecular biology and evolution, s. 5275-5291, 2021

• DOI för Avian Neo-Sex Chromosomes Reveal Dynamics of Recombination Suppression and W Degeneration
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Genetic Barriers to Historical Gene Flow between Cryptic Species of Alpine Bumblebees Revealed by Comparative Population Genomics

Christmas, Matthew; Jones, Julia C.; Olsson, Anna; Wallerman, Ola et al.

Ingår i Molecular biology and evolution, s. 3126-3143, 2021

• DOI för Genetic Barriers to Historical Gene Flow between Cryptic Species of Alpine Bumblebees Revealed by Comparative Population Genomics
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Temporal changes in the vaginal microbiota in self-samples and its association with persistent HPV16 infection and CIN2+

Berggrund, Malin; Gustavsson, Inger M.; Aarnio, Riina; Lindberg, Julia Hedlund et al.

Ingår i Virology Journal, 2020

• DOI för Temporal changes in the vaginal microbiota in self-samples and its association with persistent HPV16 infection and CIN2+
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Amplification-free long-read sequencing reveals unforeseen CRISPR-Cas9 off-target activity

Höijer, Ida; Johansson, Josefin; Gudmundsson, Sanna; Chin, Chen-Shan et al.

Ingår i Genome Biology, 2020

• DOI för Amplification-free long-read sequencing reveals unforeseen CRISPR-Cas9 off-target activity
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Discovery and population genomics of structural variation in a songbird genus

Weissensteiner, Matthias H.; Bunikis, Ignas; Catalan, Ana; Francoijs, Kees-Jan et al.

Ingår i Nature Communications, 2020

• DOI för Discovery and population genomics of structural variation in a songbird genus
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Chromosomal inversions associated with environmental adaptation in honeybees

Christmas, Matthew J; Wallberg, Andreas; Bunikis, Ignas; Olsson, Anna et al.

Ingår i Molecular Ecology, s. 1358-1374, 2019

• DOI för Chromosomal inversions associated with environmental adaptation in honeybees

A hybrid de novo genome assembly of the honeybee, Apis mellifera, with chromosome-length scaffolds

Wallberg, Andreas; Bunikis, Ignas; Vinnere, Olga; Mosbech, Mai-Britt et al.

Ingår i BMC Genomics, 2019

• DOI för A hybrid de novo genome assembly of the honeybee, Apis mellifera, with chromosome-length scaffolds
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A chromosome-level assembly of the Atlantic herring: detection of a supergene and other signals of selection

Pettersson, Mats; Rochus, Christina Marie; Han, Fan; Chen, Junfeng et al.

Ingår i Genome Research, s. 1919-1928, 2019

• DOI för A chromosome-level assembly of the Atlantic herring: detection of a supergene and other signals of selection
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Confident phylogenetic identification of uncultured prokaryotes through long read amplicon sequencing of the 16S-ITS-23S rRNA operon

Martijn, Joran; Lind, Anders E.; Schön, Max E.; Spiertz, Ian et al.

Ingår i Environmental Microbiology, s. 2485-2498, 2019

• DOI för Confident phylogenetic identification of uncultured prokaryotes through long read amplicon sequencing of the 16S-ITS-23S rRNA operon
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Regulatory changes in pterin and carotenoid genes underlie balanced color polymorphisms in the wall lizard

Andrade, Pedro; Pinho, Catarina; Perez i de lanuza, Guillem; Afonso, Sandra et al.

Ingår i Proceedings of the National Academy of Sciences of the United States of America, s. 5633-5642, 2019

• DOI för Regulatory changes in pterin and carotenoid genes underlie balanced color polymorphisms in the wall lizard

De Novo Assembly of Two Swedish Genomes Reveals Missing Segments from the Human GRCh38 Reference and Improves Variant Calling of Population-Scale Sequencing Data

Ameur, Adam; Che, Huiwen; Martin, Marcel; Bunikis, Ignas et al.

Ingår i Genes, 2018

• DOI för De Novo Assembly of Two Swedish Genomes Reveals Missing Segments from the Human GRCh38 Reference and Improves Variant Calling of Population-Scale Sequencing Data
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Combination of short-read, long-read, and optical mapping assemblies reveals large-scale tandem repeat arrays with population genetic implications

Weissensteiner, Matthias H.; Pang, Andy W. C.; Bunikis, Ignas; Höijer, Ida et al.

Ingår i Genome Research, s. 697-708, 2017

• DOI för Combination of short-read, long-read, and optical mapping assemblies reveals large-scale tandem repeat arrays with population genetic implications

De novo assembly of Dekkera bruxellensis: a multi technology approach using short and long-read sequencing and optical mapping

Olsen, Remi-Andre; Bunikis, Ignas; Tiukova, Ievgeniia; Holmberg, Kicki et al.

Ingår i GigaScience, 2015

• DOI för De novo assembly of Dekkera bruxellensis: a multi technology approach using short and long-read sequencing and optical mapping
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CanvasDB: a local database infrastructure for analysis of targeted- and whole genome re-sequencing projects

Ameur, Adam; Bunikis, Ignas; Enroth, Stefan; Gyllensten, Ulf

Ingår i Database, 2014

• DOI för CanvasDB: a local database infrastructure for analysis of targeted- and whole genome re-sequencing projects

Comprehensive profiling of the vaginal microbiome in HIV positive women using massive parallel semiconductor sequencing

Ameur, Adam; Meiring, Tracy L.; Bunikis, Ignas; Häggqvist, Susana et al.

Ingår i Scientific Reports, s. 4398, 2014

• DOI för Comprehensive profiling of the vaginal microbiome in HIV positive women using massive parallel semiconductor sequencing
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Targeted RNA Sequencing Assay Efficiently Identifies Cryptic KMT2A (MLL)-Fusions in Acute Leukemia Patients

Sevov, Marie; Bunikis, Ignas; Häggqvist, Susana; Höglund, Martin et al.

Ingår i Blood, 2014

Transcriptome of the Alternative Ethanol Production Strain Dekkera bruxellensis CBS 11270 in Sugar Limited, Low Oxygen Cultivation

Tiukova, Ievgeniia A.; Petterson, Mats E.; Tellgren-Roth, Christian; Bunikis, Ignas et al.

Ingår i PLOS ONE, 2013

• DOI för Transcriptome of the Alternative Ethanol Production Strain Dekkera bruxellensis CBS 11270 in Sugar Limited, Low Oxygen Cultivation
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Data-driven unbiased curation of the TP53 tumor suppressor gene mutation database and validation by ultradeep sequencing of human tumors

Edlund, Karolina; Larsson, Ola; Ameur, Adam; Bunikis, Ignas et al.

Ingår i Proceedings of the National Academy of Sciences of the United States of America, s. 9551-9556, 2012

• DOI för Data-driven unbiased curation of the TP53 tumor suppressor gene mutation database and validation by ultradeep sequencing of human tumors